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CORDIS - EU research results
CORDIS

Global Omic Data Integration on Animal, Vegetal and Environment Sectors

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

GLOMICAVE semantic model (opens in new window)

Common vocabulary to represent omic data and experiments to facilitate data integration and exploration

Responsible research and innovation (opens in new window)

Reporting evidence on direct RRI actions carried out by the project.

Novel training Dataset and labelling functions (opens in new window)

Report explaining the fundamentals to be able to automatically label the scientific text downloaded to allow the automatic preprocessing of the literature

Report on the contribution to standardization (opens in new window)

Description of the objectives methodology and results that refer to the collaboration and communication with the relevant standardization Technical Committees of the standardization system and the contribution of GLOMICAVE to the ongoing and future standardization development

Report on the standardization landscape and applicable standards (opens in new window)

Report presenting the project related applicable existing standards

Datasets and repositories benchmarking (opens in new window)

Deliverable devoted to assess the different repositories and datasets to derive data model and integration requirements

GLOMICAVE Knowledge graph (opens in new window)

Development of a semantic repository and subsequent plugins to store experiment information and metadata

"GLOMICAVE pre-operational consolidated platform - ""beta"" release" (opens in new window)

Overview of GLOMICAVE integrative approach including guidelines of installation.

GLOMICAVE Data lake (opens in new window)

Consolidated version of the GLOMICAVE data lake including plug-ins, data curation mechanism and the specifications of the Open-API.

GLOMICAVE Open API (opens in new window)

Details on how GLOMICAVE will facilitate data visualization and also data interaction with the rest of the analytical services.

Data gathering and curation mechanisms (opens in new window)

Development of a curated data structure for experiment metadata and webbased interface to collaboratively curate submitted datasets and link datasets to shared internal or external identifiers

GLOMICAVE website (opens in new window)

Launch of the project public webpage for communication and dissemination purposes Report describing the website and the main functionalities

Public Communication Materials (opens in new window)

First collection of public materials to be used for communication purposes

Final Public Communication Materials (opens in new window)

Final collection of public materials prepared for communication purposes.

Publications

The Metabolic Signature of In Vitro Produced Bovine Embryos Helps Predict Pregnancy and Birth after Embryo Transfer. (opens in new window)

Author(s): Isabel Gimeno; Pablo García-Manrique; Susana Carrocera; Cristina López-Hidalgo; Luis Valledor; David Martín-González; Enrique J. Gómez
Published in: Metabolites, Issue 2, 2021, Page(s) 484, ISSN 2218-1989
Publisher: MDPI
DOI: 10.3390/metabo11080484

Fitness of calves born from in vitro-produced fresh and cryopreserved embryos (opens in new window)

Author(s): Gómez Enrique, Murillo Antonio, Carrocera Susana, Pérez-Jánez Juan José, Benedito Jose Luis, Martín-González David, Gimeno Isabel
Published in: Frontiers in Veterinary Science, 2022, ISSN 2297-1769
Publisher: -
DOI: 10.3389/fvets.2022.1006995

Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience (opens in new window)

Author(s): 2. Dussarrat, T., Prigent, S., Latorre, C., Bernillon, S., Flandin, A., Díaz, F.P., Cassan, C., Van Delft, P., Jacob, D., Varala, K., Joubes, J., Gibon, Y., Rolin, D., Gutiérrez, R.A. and Pétriacq, P.
Published in: New Phytologist, 2022, ISSN 1469-8137
Publisher: Wiley
DOI: 10.1111/nph.18095

Machine Learning-Based Retention Time Prediction of Trimethylsilyl Derivatives of Metabolites (opens in new window)

Author(s): Sara M. de Cripan, Adrià Cereto-Massagué, Pol Herrero, Andrei Barcaru, Núria Canela, & Xavier Domingo-Almenara
Published in: Biomedicines, Special Issue Omics Data Analysis and Integration in Complex Diseases, 2022, ISSN 2227-9059
Publisher: MDPI
DOI: 10.3390/biomedicines10040879

Biomarker metabolite mating of viable frozen-thawed IVP bovine embryos with pregnancy-competent recipients leads to improved birth rates (opens in new window)

Author(s): Gimeno, I., Salvetti, P., Carrocera, S., Gatien, J., García-Manrique, P., López-Hidalgo, C., Valledor, L., Gómez, E
Published in: Journal of dairy science, 2023, ISSN 0022-0302
Publisher: American Dairy Science Association
DOI: 10.3168/jds.2022-23082

UPIMAPI, reCOGnizer and KEGGCharter: Bioinformatics tools for functional annotation and visualization of (meta)-omics datasets (opens in new window)

Author(s): Sequeira, J. C.; Rocha, Miguel; Alves, M. M.; Salvador, Andreia Filipa Ferreira
Published in: Computational and Structural Biotechnology Journal, Issue 1, 2022, Page(s) 1798-1810, ISSN 2001-0370
Publisher: Elsevier
DOI: 10.1016/j.csbj.2022.03.042

Computational Expansion of High-Resolution-MSn Spectral Libraries (opens in new window)

Author(s): by Brandon Y. Lieng; Andrew T. Quaile; Hannes L. Rös (Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto); Xavier Domingo-Almenara (Centre for Omics Sciences, Eurecat – Technology Centre of Catalonia & Rovira i Virgili University Joint Unit)
Published in: Analytical Chemistry, 2023, ISSN 1520-6882
Publisher: ACS Publications
DOI: 10.1021/acs.analchem.3c03343

The recipient metabolome explains the asymmetric ovarian impact on fetal sex development after embryo transfer in cattle (opens in new window)

Author(s): by Isabel Gimeno; Susana Carrocera; Enrique Gómez (Servicio Regional de Investigación y Desarrollo Agroalimentario); Pascal Salvetti; Julie Gatien & Daniel Le Bourhis (ELIANCE)
Published in: Journal of Animal Science, 2024, ISSN 1525-3163
Publisher: Oxford Academic
DOI: 10.1093/jas/skae081

Comparative constraint-based modelling of fruitdevelopment across species highlights nitrogen metabolismin the growth-defence trade-off (opens in new window)

Author(s): by Sophie Colombie, Sylvain Prigent, Cedric Cassan, Annick Moing, Chloe Beaumont, Bertrand Beauvoit, Yves Gibon, Ghislaine Hilbert-Masson, Christel Renaud (Univ. Bordeaux), Emilia Dell’Aversana, Petronia Carillo (University of Campania “Luigi Vanvitelli”), Tim McCubbin, and Lars Keld Nielsen (The University of Queensland).
Published in: The Plant Journal, 2023, 2023, ISSN 1365-313X
Publisher: Wiley Online Library
DOI: 10.1111/tpj.16409

Enzyme-based kinetic modelling of ASC–GSH cycle during tomato fruit development reveals the importance of reducing power and ROS availability (opens in new window)

Author(s): by Guillaume Decros; Thomas Dussarrat; Pierre Baldet; Martine Dieuaide-Noubhani; Alice Destailleur; Sylvain Prigent; Kentaro Mori; Joana Jorly; Sophie Colombié; Bertrand Beauvoit (INRAE, University of Bordeaux); Yves Gibon; Cédric Cassan; Amélie Flandin; Cécile Cabasson; Pierre Pétriacq (Bordeaux Metabolome, MetaboHUB)
Published in: New Phytologist, Issue Volume 240, 2023, ISSN 1469-8137
Publisher: New Phytologist Foundation
DOI: 10.1111/nph.19160

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