Descripción del proyecto
Modelizar la electrofisiología cardíaca
La arritmia cardíaca, el latido irregular del corazón, es una causa frecuente de muerte y discapacidad. Para estudiar el complejo sistema eléctrico que da origen a esta arritmia, se utilizan modelos matemáticos de manera generalizada. Los científicos del proyecto MICROCARD, financiado con fondos europeos, quieren construir el sucesor de estos modelos electrofisiológicos del corazón que representan células de forma individual y sus interconexiones. Sin embargo, esto aumenta considerablemente el tamaño y la complejidad de las simulaciones, y requiere la intervención de sistemas informáticos a exaescala. MICROCARD desarrollará una plataforma de simulación sofisticada adecuada para los ordenadores a exaescala y que proporciona información fiable sobre la electrofisiología del corazón y los sistemas biológicos similares como los nervios, los músculos, los ojos y el encéfalo.
Objetivo
Cardiovascular diseases are the most frequent cause of death worldwide and half of these deaths are due to cardiac arrhythmia, a disorder of the heart's electrical synchronization system. Numerical models of this complex system are highly sophisticated and widely used, but to match observations in aging and diseased hearts they need to move from a continuum approach to a representation of individual cells and their interconnections. This implies a different, harder numerical problem and a 10,000-fold increase in problem size. Exascale computers will be needed to run such models.
We propose to develop an exascale application platform for cardiac electrophysiology simulations that is usable for cell-by-cell simulations. The platform will be co-designed by HPC experts, numerical scientists, biomedical engineers, and biomedical scientists, from academia and industry. We will develop, in concert, numerical schemes suitable for exascale parallelism, problem-tailored linear-system solvers and preconditioners, and a compiler to translate high-level model descriptions into optimized, energy-efficient system code for heterogeneous computing systems. The code will be parallelized with a recently developed runtime system that is resilient to hardware failures and will use an energy-aware task placement strategy.
The platform will be applied in real-life use cases with high impact in the biomedical domain and will showcase HPC in this area where it is painfully underused. It will be made accessible for a wide range of users both as code and through a web interface.
We will further employ our HPC and biomedical expertise to accelerate the development of parallel segmentation and (re)meshing software, necessary to create the extremely large and complex meshes needed from available large volumes of microscopy data.
The platform will be adaptable to similar biological systems such as nerves, and components of the platform will be reusable in a wide range of applications.
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IA - Innovation actionCoordinador
33000 Bordeaux
Francia