Genomic hotspots of adaptation to whole genome duplication

Project Information

HOTSPOT

Grant agreement ID: 679056

DOI 10.3030/679056

Project closed

EC signature date 18 December 2015

Start date 1 January 2016

End date 31 December 2021

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 490 329,00

EU contribution € 1 490 329,00

Coordinated by

THE UNIVERSITY OF NOTTINGHAM
United Kingdom

Publications

Peer reviewed articles (18)

Polyploidy underlies co-option and diversification of biosynthetic triterpene pathways in the apple tribe.

Author(s): Su W, Jing Y, Lin S, Yue Z, Yang X, Xu J, Wu J, Zhang Z, Xia R, Zhu J, An N, Chen H, Hong Y, Yuan Y, Long T, Zhang L, Jiang Y, Liu Z, Zhang H, Gao Y, Liu Y, Lin H, Wang H, Yant L, Lin S, and Liu Z,
Published in: Proceedings of the National Academy of Sciences, 2021, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2101767118

Convergent evolution in Arabidopsis halleri and Arabidopsis arenosa on calamine metalliferous soils

Author(s): Veronica Preite; Christian Sailer; Lara Syllwasschy; Sian Bray; Ute Krämer; Levi Yant
Published in: Phil Trans Roy. Soc. B, Issue 15, 2019, ISSN 0962-8436
Publisher: Royal Society of London
DOI: 10.1101/459362

Effects of FLOWERING LOCUS T on FD during the transition to flowering at the shoot apical meristem of Arabidopsis thaliana

Author(s): Collani, Silvio; Neumann, Manuela; Yant, Levi; Schmid, Markus
Published in: Plant Physiology, Issue 1, 2018, ISSN 0032-0889
Publisher: American Society of Plant Biologists
DOI: 10.1101/483925

A novel allele of ASY3 is associated with greater meiotic stability in autotetraploid Arabidopsis lyrata

Author(s): Paul J. Seear; Catherine L. Gregory; Darren Heavens; Roswitha Schmickl; Roswitha Schmickl; Levi Yant; James D. Higgins
Published in: PLoS Genetics, Issue 8, 2020, ISSN 1553-7390
Publisher: Public Library of Science
DOI: 10.1371/journal.pgen.1008900

Genomic novelty and process-level convergence in adaptation to whole genome duplication

Author(s): Bohutínská, Magdalena; Alston, Mark; Monnahan, Patrick; Bray, Sian; Paajanen, Pirita; Kolář, Filip; Yant, Levi
Published in: Molecular Biology and Evolution, Issue 6, 2021, ISSN 0737-4038
Publisher: Oxford University Press
DOI: 10.1101/2020.01.31.929109

Interspecific introgression mediates adaptation to whole genome duplication.

Author(s): Sarah Marburger; Patrick J. Monnahan; Paul J. Seear; Simon H. Martin; Jordan Koch; Pirita Paajanen; Magdalena Bohutínská; Magdalena Bohutínská; James D. Higgins; Roswitha Schmickl; Roswitha Schmickl; Levi Yant; Levi Yant
Published in: Nature Communications, Issue 10, 2019, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-019-13159-5

Evolutionary footprints of a cold relic in a rapidly warming world

Author(s): Eva Wolf Is a corresponding author, Emmanuel Gaquerel, Mathias Scharmann, Levi Yant, Marcus A Koch
Published in: eLife, 2021, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.71572

Adaptation to coastal soils through pleiotropic boosting of ion and stress hormone concentrations in wild Arabidopsis thaliana.

Author(s): Silvia Busoms; Silvia Busoms; Joana Terés; Levi Yant; Charlotte Poschenrieder; David E. Salt
Published in: New Phytologist, Issue 4, 2021, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.17569

Maintenance of adaptive dynamics in a bottlenecked range edge population that retained outcrossing. Molecular Biology and Evolution,

Author(s): Takou M, Hämälä T, Steige K, Koch E, Dittberner H, Yant L, Genete M, Sunyaev S, Vekemans X, Savolainen O, and de Meux J
Published in: Molecular Biology and Evolution, 2021, ISSN 0737-4038
Publisher: Oxford University Press
DOI: 10.1093/molbev/msaa322

"The ""Polyploid Hop"": shifting challenges and opportunities over the evolutionary lifespan of genome duplications"

Author(s): Pierre Baduel; Sian Bray; Mario Vallejo-Marin; Filip Kolář; Filip Kolář; Levi Yant; Levi Yant
Published in: Frontiers in Ecology and Evolution, Issue 2, 2018, ISSN 2296-701X
Publisher: Frontiers Media S.A.
DOI: 10.3389/fevo.2018.00117

Adaptive introgression: how polyploidy reshapes gene flow landscapes.

Author(s): Roswitha Schmickl; Roswitha Schmickl; Levi Yant
Published in: New Phytologist, Issue 1, 2020, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.17204

Help or hinderance? Investigating the evolutionary impact of whole genome duplication on immunogenetic diversity and parasite load in Corydoras catfishes

Author(s): Bell EA, Cable J, Oliveira C, Richardson DS, Yant L, Taylor MI
Published in: Ecology and Evolution, 2020, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.6987

Serpentine adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles.

Author(s): Konečná V, Bray S, Vlček J, Bohutínská M, Požárová D, Choudhury R, Bollmann A, Flis P, Salt D, Parisod C, *Yant L, *Kolář F
Published in: Nature Communications, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-25256-5

Borrowed alleles and convergence in serpentine adaptation

Author(s): Brian J. Arnold, Brett Lahner, Jeffrey M. DaCosta, Caroline M. Weisman, Jesse D. Hollister, David E. Salt, Kirsten Bomblies, Levi Yant
Published in: Proceedings of the National Academy of Sciences, Issue 113/29, 2016, Page(s) 8320-8325, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1600405113

The genome-wide impact of cadmium on microRNA and mRNA expression in contrasting Cd responsive wheat genotypes

Author(s): Min Zhou; Shigang Zheng; Rong Liu; Lu Lu; Chihong Zhang; Lei Zhang; Levi Yant; Yu Wu
Published in: BMC Genomics, Issue 2, 2019, ISSN 1471-2164
Publisher: BioMed Central
DOI: 10.1186/s12864-019-5939-z

Fluctuating selection on migrant adaptive sodium transporter alleles in coastal Arabidopsis thaliana.

Author(s): Busoms, Silvia; Paajanen, Pirita; Marburger, Sarah; Bray, Sian; Huang, Xin-Yuan; Poschenrieder, Charlotte; Yant, Levi; Salt, David E.
Published in: Proceedings of the National Academy of Sciences, Issue 21, 2018, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1816964115

Genome-wide identification, phylogenetic and expression analysis of the heat shock transcription factor family in bread wheat ( Triticum aestivum L.)

Author(s): Zhou, Min; Zheng, Shigang; Liu, Rong; Lu, Jing; Lu, Lu; Zhang, Chihong; Liu, Zehou; Luo, Congpei; Zhang, Lei; Yant, Levi; Wu, Yu
Published in: BMC Genomics, Issue 2, 2019, ISSN 1471-2164
Publisher: BioMed Central
DOI: 10.1186/s12864-019-5876-x

Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus.

Author(s): Polina Yu. Novikova; Ian G. Brennan; William W Booker; Michael Mahony; Paul Doughty; Alan R. Lemmon; Emily Moriarty Lemmon; J. Dale Roberts; Levi Yant; Yves Van de Peer; J. Scott Keogh; Stephen C. Donnellan; Stephen C. Donnellan
Published in: PLOS Genetics, Issue 16, 2020, ISSN 1553-7390
Publisher: Public Library of Science
DOI: 10.1371/journal.pgen.1008769