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Microbial lipids: The three domain ‘lipid divide’ revisited

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Publications

Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake

Author(s): Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, Jaap S. Sinninghe Damsté
Published in: Biogeosciences, Issue 17/21, 2020, Page(s) 5443-5463, ISSN 1726-4189
DOI: 10.5194/bg-17-5443-2020

Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes

Author(s): Charlotte M. van der Graaf, Javier Sánchez-España, Iñaki Yusta, Andrey Ilin, Sudarshan A. Shetty, Nicole J. Bale, Laura Villanueva, Alfons J. M. Stams, Irene Sánchez-Andrea
Published in: Microorganisms, Issue 8/9, 2020, Page(s) 1275, ISSN 2076-2607
DOI: 10.3390/microorganisms8091275

Lacipirellula parvula gen. nov., sp. nov., representing a lineage of planctomycetes widespread in low-oxygen habitats, description of the family Lacipirellulaceae fam. nov. and proposal of the orders Pirellulales ord. nov., Gemmatales ord. nov. and Isosphaerales ord. nov.

Author(s): Svetlana N. Dedysh, Irina S. Kulichevskaya, Alexey V. Beletsky, Anastasia A. Ivanova, W. Irene C. Rijpstra, Jaap S. Sinninghe Damsté, Andrey V. Mardanov, Nikolai V. Ravin
Published in: Systematic and Applied Microbiology, Issue 43/1, 2020, Page(s) 126050, ISSN 0723-2020
DOI: 10.1016/j.syapm.2019.126050

Natranaerofaba carboxydovora gen. nov., sp. nov., an extremely haloalkaliphilic CO ‐utilizing acetogen from a hypersaline soda lake representing a novel deep phylogenetic lineage in the class ‘ Natranaerobiia ’

Author(s): Dimitry Y. Sorokin, Martijn Diender, Alexander Y. Merkel, Michel Koenen, Nicole J. Bale, Martin Pabst, Jaap S. Sinninghe Damsté, Diana Z. Sousa
Published in: Environmental Microbiology, 2020, ISSN 1462-2912
DOI: 10.1111/1462-2920.15241

The absence of intact polar lipid-derived GDGTs in marine waters dominated by Marine Group II: Implications for lipid biosynthesis in Archaea

Author(s): Marc A. Besseling, Ellen C. Hopmans, Nicole J. Bale, Stefan Schouten, Jaap S. Sinninghe Damsté, Laura Villanueva
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
DOI: 10.1038/s41598-019-57035-0

A unique bacteriohopanetetrol stereoisomer of marine anammox

Author(s): Rachel Schwartz-Narbonne, Philippe Schaeffer, Ellen C. Hopmans, Margot Schenesse, E. Alex Charlton, D. Martin Jones, Jaap S. Sinninghe Damsté, Muhammad Farhan Ul Haque, Mike S.M. Jetten, Sabine K. Lengger, J. Colin Murrell, Philippe Normand, Guylaine H.L. Nuijten, Helen M. Talbot, Darci Rush
Published in: Organic Geochemistry, Issue 143, 2020, Page(s) 103994, ISSN 0146-6380
DOI: 10.1016/j.orggeochem.2020.103994

Influence of temperature on the δ 13 C values and distribution of methanotroph‐related hopanoids in Sphagnum ‐dominated peat bogs

Author(s): Julia F. Winden, Helen M. Talbot, Gert‐Jan Reichart, Niall P. McNamara, Albert Benthien, Jaap S. Sinninghe Damsté
Published in: Geobiology, Issue 18/4, 2020, Page(s) 497-507, ISSN 1472-4677
DOI: 10.1111/gbi.12389

Butyrate Conversion by Sulfate-Reducing and Methanogenic Communities from Anoxic Sediments of Aarhus Bay, Denmark

Author(s): Derya Ozuolmez, Elisha K. Moore, Ellen C. Hopmans, Jaap S. Sinninghe Damsté, Alfons J. M. Stams, Caroline M. Plugge
Published in: Microorganisms, Issue 8/4, 2020, Page(s) 606, ISSN 2076-2607
DOI: 10.3390/microorganisms8040606

Global temperature calibration of the Long chain Diol Index in marine surface sediments

Author(s): Marijke W. de Bar, Gabriella Weiss, Caglar Yildiz, Sebastiaan W. Rampen, Julie Lattaud, Nicole J. Bale, Furu Mienis, Geert-Jan A. Brummer, Hartmut Schulz, Darci Rush, Jung-Hyun Kim, Barbara Donner, Jochen Knies, Andreas Lückge, Jan-Berend W. Stuut, Jaap S. Sinninghe Damsté, Stefan Schouten
Published in: Organic Geochemistry, Issue 142, 2020, Page(s) 103983, ISSN 0146-6380
DOI: 10.1016/j.orggeochem.2020.103983

Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., Two Marine Anaerobes of the Pontiellaceae fam. nov. Producing Sulfated Glycosaminoglycan-like Exopolymers

Author(s): Daan M. van Vliet, Yuemei Lin, Nicole J. Bale, Michel Koenen, Laura Villanueva, Alfons J. M. Stams, Irene Sánchez-Andrea
Published in: Microorganisms, Issue 8/6, 2020, Page(s) 920, ISSN 2076-2607
DOI: 10.3390/microorganisms8060920

Physiological, chemotaxonomic and genomic characterization of two novel piezotolerant bacteria of the family Marinifilaceae isolated from sulfidic waters of the Black Sea

Author(s): Subhash Yadav, Laura Villanueva, Nicole Bale, Michel Koenen, Ellen C. Hopmans, Jaap S. Sinninghe Damsté
Published in: Systematic and Applied Microbiology, Issue 43/5, 2020, Page(s) 126122, ISSN 0723-2020
DOI: 10.1016/j.syapm.2020.126122

Pheno- and Genotyping of Hopanoid Production in Acidobacteria

Author(s): Jaap S. Sinninghe Damsté, W. Irene C. Rijpstra, Svetlana N. Dedysh, Bärbel U. Foesel, Laura Villanueva
Published in: Frontiers in Microbiology, Issue 8, 2017, ISSN 1664-302X
DOI: 10.3389/fmicb.2017.00968

Lipids as paleomarkers to constrain the marine nitrogen cycle

Author(s): Darci Rush, Jaap S. Sinninghe Damsté
Published in: Environmental Microbiology, Issue 19/6, 2017, Page(s) 2119-2132, ISSN 1462-2912
DOI: 10.1111/1462-2920.13682

Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes

Author(s): Dimitry Y. Sorokin, Tatiana V. Khijniak, Nadezhda A. Kostrikina, Alexander G. Elcheninov, Stepan V. Toshchakov, Nicole J. Bale, Jaap S. Sinninghe Damsté, Ilya V. Kublanov
Published in: Systematic and Applied Microbiology, Issue 41/4, 2018, Page(s) 355-362, ISSN 0723-2020
DOI: 10.1016/j.syapm.2018.04.002

Benthic archaea as potential sources of tetraether membrane lipids in sediments across an oxygen minimum zone

Author(s): Marc A. Besseling, Ellen C. Hopmans, R. Christine Boschman, Jaap S. Sinninghe Damsté, Laura Villanueva
Published in: Biogeosciences, Issue 15/13, 2018, Page(s) 4047-4064, ISSN 1726-4189
DOI: 10.5194/bg-15-4047-2018

Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments

Author(s): Peer H. A. Timmers, Charlotte D. Vavourakis, Robbert Kleerebezem, Jaap S. Sinninghe Damsté, Gerard Muyzer, Alfons J. M. Stams, Dimity Y. Sorokin, Caroline M. Plugge
Published in: Frontiers in Microbiology, Issue 9, 2018, ISSN 1664-302X
DOI: 10.3389/fmicb.2018.03039

Redox-dependent niche differentiation provides evidence for multiple bacterial sources of glycerol tetraether lipids in lakes

Author(s): Yuki Weber, Jaap S. Sinninghe Damsté, Jakob Zopfi, Cindy De Jonge, Adrian Gilli, Carsten J. Schubert, Fabio Lepori, Moritz F. Lehmann, Helge Niemann
Published in: Proceedings of the National Academy of Sciences, Issue 115/43, 2018, Page(s) 10926-10931, ISSN 0027-8424
DOI: 10.1073/pnas.1805186115

Natronolimnobius sulfurireducens sp. nov. and Halalkaliarchaeum desulfuricum gen. nov., sp. nov., the first sulfur-respiring alkaliphilic haloarchaea from hypersaline alkaline lakes

Author(s): Dimitry Y. Sorokin, Mikhail Yakimov, Enzo Messina, Alexander Y. Merkel, Nicole J. Bale, Jaap S. Sinninghe Damsté
Published in: International Journal of Systematic and Evolutionary Microbiology, 2019, ISSN 1466-5026
DOI: 10.1099/ijsem.0.003506

Halococcoides cellulosivorans gen. nov., sp. nov., an extremely halophilic cellulose-utilizing haloarchaeon from hypersaline lakes

Author(s): Dimitry Y. Sorokin, Tatiana V. Khijniak, Alexander G. Elcheninov, Stepan V. Toshchakov, Nadezhda A. Kostrikina, Nicole J. Bale, Jaap S. Sinninghe Damsté, Ilya V. Kublanov
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 69/5, 2019, Page(s) 1327-1335, ISSN 1466-5026
DOI: 10.1099/ijsem.0.003312

New Insights Into the Polar Lipid Composition of Extremely Halo(alkali)philic Euryarchaea From Hypersaline Lakes

Author(s): Nicole J. Bale, Dimitry Y. Sorokin, Ellen C. Hopmans, Michel Koenen, W. Irene C. Rijpstra, Laura Villanueva, Hans Wienk, Jaap S. Sinninghe Damsté
Published in: Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X
DOI: 10.3389/fmicb.2019.00377

Natrarchaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius halalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes

Author(s): Dimitry Y. Sorokin, Alexander G. Elcheninov, Stepan V. Toshchakov, Nicole J. Bale, Jaap S. Sinninghe Damsté, Tatiana V. Khijniak, Ilya V. Kublanov
Published in: Systematic and Applied Microbiology, Issue 42/3, 2019, Page(s) 309-318, ISSN 0723-2020
DOI: 10.1016/j.syapm.2019.01.001

Fatty Acid and Hopanoid Adaption to Cold in the Methanotroph Methylovulum psychrotolerans

Author(s): Nicole J. Bale, W. Irene C. Rijpstra, Diana X. Sahonero-Canavesi, Igor Y. Oshkin, Svetlana E. Belova, Svetlana N. Dedysh, Jaap S. Sinninghe Damsté
Published in: Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X
DOI: 10.3389/fmicb.2019.00589

Biosynthesis of Long Chain Alkyl Diols and Long Chain Alkenols in Nannochloropsis spp. (Eustigmatophyceae)

Author(s): Sergio Balzano, Laura Villanueva, Marijke de Bar, Diana X Sahonero Canavesi, Caglar Yildiz, Julia C Engelmann, Eric Marechal, Josselin Lupette, Jaap S Sinninghe Damsté, Stefan Schouten
Published in: Plant and Cell Physiology, 2019, ISSN 0032-0781
DOI: 10.1093/pcp/pcz078

Depth-related differences in archaeal populations impact the isoprenoid tetraether lipid composition of the Mediterranean Sea water column

Author(s): Marc A. Besseling, Ellen C. Hopmans, Michel Koenen, Marcel T.J. van der Meer, Sanne Vreugdenhil, Stefan Schouten, Jaap S. Sinninghe Damsté, Laura Villanueva
Published in: Organic Geochemistry, Issue 135, 2019, Page(s) 16-31, ISSN 0146-6380
DOI: 10.1016/j.orggeochem.2019.06.008

Granulicella sibirica sp. nov., a psychrotolerant acidobacterium isolated from an organic soil layer in forested tundra, West Siberia

Author(s): Igor Y. Oshkin, Irina S. Kulichevskaya, W. Irene C. Rijpstra, Jaap S. Sinninghe Damsté, Andrey L. Rakitin, Nikolai V. Ravin, Svetlana N. Dedysh
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 69/4, 2019, Page(s) 1195-1201, ISSN 1466-5026
DOI: 10.1099/ijsem.0.003290

Edaphobacter lichenicola sp. nov., a member of the family Acidobacteriaceae from lichen-dominated forested tundra

Author(s): Svetlana E. Belova, Natalia E. Suzina, W. Irene C. Rijpstra, Jaap S. Sinninghe Damsté, Svetlana N. Dedysh
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 68/4, 2018, Page(s) 1265-1270, ISSN 1466-5026
DOI: 10.1099/ijsem.0.002663

Oleiharenicola alkalitolerans gen. nov., sp. nov., a new member of the phylum Verrucomicrobia isolated from an oilsands tailings pond

Author(s): Fauziah F. Rochman, Joong-Jae Kim, W. Irene C. Rijpstra, Jaap S. Sinninghe Damsté, Peter Schumann, Tobin J. Verbeke, Peter F. Dunfield
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 68/4, 2018, Page(s) 1078-1084, ISSN 1466-5026
DOI: 10.1099/ijsem.0.002624

An overview of the occurrence of ether- and ester-linked iso-diabolic acid membrane lipids in microbial cultures of the Acidobacteria: Implications for brGDGT paleoproxies for temperature and pH

Author(s): Jaap S. Sinninghe Damsté, W. Irene C. Rijpstra, Bärbel U. Foesel, Katharina J. Huber, Jörg Overmann, Satoshi Nakagawa, Joong Jae Kim, Peter F. Dunfield, Svetlana N. Dedysh, Laura Villanueva
Published in: Organic Geochemistry, Issue 124, 2018, Page(s) 63-76, ISSN 0146-6380
DOI: 10.1016/j.orggeochem.2018.07.006

Incomplete recovery of intact polar glycerol dialkyl glycerol tetraethers from lacustrine suspended biomass

Author(s): Yuki Weber, Jaap S. Sinninghe Damsté, Ellen C. Hopmans, Moritz F. Lehmann, Helge Niemann
Published in: Limnology and Oceanography: Methods, Issue 15/9, 2017, Page(s) 782-793, ISSN 1541-5856
DOI: 10.1002/lom3.10198

Membrane Lipid Composition of the Moderately Thermophilic Ammonia-Oxidizing Archaeon “ Candidatus Nitrosotenuis uzonensis” at Different Growth Temperatures

Author(s): Nicole J. Bale, Marton Palatinszky, W. Irene C. Rijpstra, Craig W. Herbold, Michael Wagner, Jaap S. Sinninghe Damsté
Published in: Applied and Environmental Microbiology, Issue 85/20, 2019, ISSN 0099-2240
DOI: 10.1128/aem.01332-19

Actinocrinis puniceicyclus gen. nov., sp. nov., an actinobacterium isolated from an acidic spring

Author(s): Joong-Jae Kim, Colbran E Marjerrison, Sabrina L Cornish Shartau, Allyson L Brady, Christine E Sharp, W. Irene C Rijpstra, Jaap S Sinninghe Damsté, Peter Schumann, Stephen E Grasby, Peter F Dunfield
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 67/3, 2017, Page(s) 602-609, ISSN 1466-5026
DOI: 10.1099/ijsem.0.001667

Demethylated hopanoids in ‘Ca. Methylomirabilis oxyfera’ as biomarkers for environmental nitrite-dependent methane oxidation

Author(s): Nadine T. Smit, Darci Rush, Diana X. Sahonero-Canavesi, Monique Verweij, Olivia Rasigraf, Simon Guerrero Cruz, Mike S.M. Jetten, Jaap S. Sinninghe Damsté, Stefan Schouten
Published in: Organic Geochemistry, Issue 137, 2019, Page(s) 103899, ISSN 0146-6380
DOI: 10.1016/j.orggeochem.2019.07.008

Biomarker evidence for nitrogen-fixing cyanobacterial blooms in a brackish surface layer in the Nile River plume during sapropel deposition

Author(s): Nicole J. Bale, Rick Hennekam, Ellen C. Hopmans, Denise Dorhout, Gert-Jan Reichart, Marcel van der Meer, Tracy A. Villareal, Jaap S. Sinninghe Damsté, Stefan Schouten
Published in: Geology, Issue 47/11, 2019, Page(s) 1088-1092, ISSN 0091-7613
DOI: 10.1130/g46682.1

Diagnostic amide products of amino lipids detected in the microaerophilic bacteria Lutibacter during routine fatty acid analysis using gas chromatography

Author(s): Nicole J. Bale, Michel Koenen, Subhash Yadav, Ellen C. Hopmans, Laura Villanueva, Jaap S. Sinninghe Damsté, Stefan Schouten
Published in: Organic Geochemistry, Issue 144, 2020, Page(s) 104027, ISSN 0146-6380
DOI: 10.1016/j.orggeochem.2020.104027

Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids

Author(s): Laura Villanueva, F. A. Bastiaan von Meijenfeldt, Alexander B. Westbye, Subhash Yadav, Ellen C. Hopmans, Bas E. Dutilh, Jaap S. Sinninghe Damsté
Published in: The ISME Journal, Issue 15/1, 2021, Page(s) 168-182, ISSN 1751-7362
DOI: 10.1038/s41396-020-00772-2

Limnoglobus roseus gen. nov., sp. nov., a novel freshwater planctomycete with a giant genome from the family Gemmataceae

Author(s): Irina S. Kulichevskaya, Daniil G. Naumoff, Kirill K. Miroshnikov, Anastasia A. Ivanova, Dmitriy A. Philippov, Anna Hakobyan, W. Irene C. Rijpstra, Jaap S. Sinninghe Damsté, Werner Liesack, Svetlana N. Dedysh
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 70/2, 2020, Page(s) 1240-1249, ISSN 1466-5026
DOI: 10.1099/ijsem.0.003904