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Human Brain Project Specific Grant Agreement 1

Deliverables

D11.5.1 Education Programme Report

WPs involved: WP 11.5 This report will provide a detailed description of the HBP Curriculum as well as evaluation, statistics, conclusions and outlook of the HBP Education Programme tasks.

D 2.7.5 CDP6 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 7.6.1 High-Performance Analytics and Computing Platform specification update

"WPs involved: WP7.1, WP7.2, WP7.3, WP7.4, WP7.5 & WP7.6 This document is an update of the Ramp-Up Phase Deliverable D7.7.2 ""High Performance Computing Platform v1 - specification document"". It will provide a detailed specification of the High-Performance Analytics and Computing Platform at the end of SGA1."

D 2.7.1 SP2 Human Brain Organisation - Results for SGA1 Period 1

WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: Research results, tools and methods and contribution to initiate the platforms (for Period 1): Description of the data, tools and methods produced and developed in SP2 during the SGA1 phase and their contribution to the platforms. This package will include genetic factors contributing to at least one morphological / cognitive factor, genetic variants and individual genomic profiles, new cytoarchitectonic probabilistic maps of 5 or more human brain regions, mean densities of 15 different receptors in human anterior, mid- and posterior cingulate cortex, early extrastriate and higher visual areas, receptor distributions for selected areas of an initial native Big Brain parcellation, mapped U-fibre bundles and their microstructure, electrophysiological profiles and matching morphologies, massive mapping data from the 12 subjects of the IBC cohort, image-based meta-analysis of multiple functional datasets handled by HBP, framework for multi-modal mapping for one initial region of interest, systematic multi-modal mapping and characterization for at least 3 ROIs, differential laminar‐specific fMRI signals along feedforward ‐and feedback pathways in monkey and humans, model of spatial and feature-based attention effects at the level of cortical columns and layers, excitatory and inhibitory synaptic connections in rodent neocortex and their neuromodulation, effect of ventral midbrain stimulation on cortical representations in monkey, sulcus‐based alignment of cytoarchitectonic and diffusion‐based parcellations, connectivity matrix of the cytoarchitectonic and diffusion‐based parcellations, EEG recording of the first 30 patients localized relative to the HBP connectome nodes, initial prototype of shape model and inter-individual spatial alignment, automatic extraction and identification of sulci from MRI, matching between small and large FoV PLI, HBP workflow for computing cell counts in high-resolution microscopic data.

D 12.5.3 Report on Ethics and Society activities

WPs involved: WP12.1, WP12.2, WP12.3, WP12.4 & WP12.5 This is the second SP12 report on Ethics and Society activities during SGA-1, detailing the main outcomes and results achieved by SP12 work packages in M12-24.

D 8.6.1 SP8 Medical Informatics Platform –Architecture and Deployment Plan

WPs involved: WP8.1, WP8.2, WP8.3, WP8.4, WP8.5 & WP8.6 • Architecture: Description of overall architecture for Medical Informatics Platform, providing a detailed plan for how “the architecture split designs will now converge” specifying who is responsible for what and when it must be done. • Deployment: Detailed deployment plan, specifying how difficulties encountered in deploying MIP to first five hospitals will be overcome specifying who is responsible for what and when it must be done. • Identify dependencies between architecture and deployment.

D 3.5.2 SP3 Systems and Cognitive Neuroscience - Results for SGA1 Period 2

WPs involved: WP3.1, WP3.2, WP3.3, WP3.4 WP3.5 & WP3.6 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • WP3.1 input: Studies in human brain imaging, rodent electrophysiology, optogenetics, and computational modelling of feedforward and feedback processing in the context of object recognition, and reinforcement learning. This report will include data on improvements made in modelling, experiments, techniques, and reports links to data repositories, use of Platforms as well as collaboration in Co-design projects. • WP3.2 input Period 1: Slow Wave Activity experiments, models and simulations and interaction with HBP platforms. This report will include usage statistics, TRLs, collaboration in Co-design projects and updates on data accessibility. • WP3.3 input Period 1: Studies in human brain imaging, rodent electrophysiology, optogenetics, computational modelling and robotics of concerning Episodic memory and multisensory integration, with Robot demos. This report will include data on improvements made in experiments & measurement techniques, use of the tools by colleagues in the field and/or in HBP, links to data repositories, collaboration in Co-design projects, and TRLs. • WP3.4 input Period 1: Studies in electrophysiology, imaging and behaviour in rodents and humans, and multilevel computational modelling. This report will include methods for assessing consciousness and testing of theories of consciousness; links to data repositories, collaboration in Co-design projects, use of platforms, usage statistics for tools delivered. • WP3.5 input Period 1: Data usage plan and impact of data on models. A detailed plan of data usage and the impact of data on models for the data will be generated • WP3.6 input Period 1: Scientific report on SP3 contributions to the development of the infrastructure and co-design projects. This report will include the development of network simulation models, data analysis methods and other tools, as well as constraints and requirements for further applications using HBP platforms, and usage statistics for tools delivered.

D 12.5.1 Report on Ethics and Society activities

WPs involved: WP12.1, WP12.2, WP12.3, WP12.4 & WP12.5 This is the first SP12 report on Ethics and Society activities during SGA-1, detailing the main outcomes and results achieved by SP12 work packages in M1-12.

D 11.3.3 HBP Software Engineering and Quality Assurance Approach

WPs involved: WP11.2, WP11.3, WP5.6, WP6.5, WP7.5, WP8.6, WP9.5 & WP10.7 • This will describe the overall software engineering and quality assurance approach (covering both agile and codesign processes) This will update related content in System Engineering Package sent by PCO (Jeff Muller) to the EC in March 2016 and address feedback points received from the EC. NOTE: PEER REVIEW REQUIRED

D 5.8.3 SP5 Neuroinformatics Platform - Results for SGA1 Period 2

Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP Products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDES: Research results, tools and methods and contribution to initiate the Platforms (for Period 2)

D 4.7.1 SP4 Theoretical Neuroscience - Results for SGA1 Period 1

WPs involved: WP4.1, WP4.2, WP4.3, WP4.4, WP4.5 & WP4.7 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • WP4.1 Period 1: Report of publications on theoretical approaches that bridge scales for model types, for brain signals and for model scales. Report of publications on theoretical approaches that bridge scales for model types (detailed vs. simplified), for brain signals (cellular vs. large-scale) and for model scales (cellular vs populations). • WP4.2 Period 1: Implementation of multi-area model of macaque visual cortex relating macroscopic brain connectivity to the microscopic connectivity. Implementation of multi-area model of macaque visual cortex relating macroscopic brain connectivity to the microscopic connectivity available to consortium through collaboratory and documented. • WP4.3 Period 1: Report of publications on theoretical approaches that relate learning and memory to synaptic plasticity. Report of publications on theoretical approaches that relate learning and memory to synaptic plasticity. • WP4.4 Period 1: Models of neural and large-scale brain activity to understand the constraints imposed by structural connectivity on their behaviour with applications to resting-state brain activity, vision, motor-control and spatial navigation. WP 4.4 will create models of neural and large-scale brain activity to understand the constraints imposed by structural connectivity on their behaviour with applications to resting-state brain activity, vision, motor-control and spatial navigation. • WP4.5 Period 1: Report on first use case(s) for the comparison of brain activity data and model simulation(s). Report on first use case(s) for the comparison of brain activity data and model simulation

D 4.7.3 CDP5 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 12.5.4 Second Opinions Report

WPs involved: WP12.1, WP12.2, WP12.3, WP12.4 & WP12.5 This is the second “opinions” reports formulating SP12 observations and recommendations about ethical and social issues arising during the course of HBP

D 2.7.3 CDP3 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 4.7.2 SP4 Theoretical Neuroscience - Results for SGA1 Period 2

WPs involved: WP4.1, WP4.2, WP4.3, WP4.4, WP4.5 & WP4.7 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • WP4.1: Report of publications on theoretical approaches that bridge scales for model types, for brain signals and for model scales. Report of publications on theoretical approaches that bridge scales for model types (detailed vs. simplified), for brain signals (cellular vs. large-scale) and for model scales (cellular vs populations). • WP4.2: Implementation of multi-area model of macaque visual cortex relating macroscopic brain connectivity to the microscopic connectivity. Implementation of multi-area model of macaque visual cortex relating macroscopic brain connectivity to the microscopic connectivity available to consortium through collaboratory and documented. • WP4.3: Report of publications on theoretical approaches that relate learning and memory to synaptic plasticity. Report of publications on theoretical approaches that relate learning and memory to synaptic plasticity. • WP4.4: Models of neural and large-scale brain activity to understand the constraints imposed by structural connectivity on their behaviour with applications to resting-state brain activity, vision, motor-control and spatial navigation. WP 4.4 will create models of neural and large-scale brain activity to understand the constraints imposed by structural connectivity on their behaviour with applications to resting-state brain activity, vision, motor-control and spatial navigation. • WP4.5: Report on first use case(s) for the comparison of brain activity data and model simulation(s). Report on first use case(s) for the comparison of brain activity data and model simulation(s)..

D 9.5.2 SP9 Neuromorphic Computing Platform - Results for SGA1 Period 2

WPs involved: WP9.1, WP9.2, WP9.3, WP9.4 & WP9.5 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Neuromorphic Computing Platform: Status description: Description of the status of the full range of the neuromorphic computing platform (standalone systems and big platform systems) including the software stack and a guidebook update release.

D 1.5.2 SP1 Mouse Brain Organisation - Results for SGA1 Period 2

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4 & WP1.5 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Brain Atlas data package. This data, which will be deposited in the HBP Brain Atlas, will include: Maps of the vasculature; Whole-brain maps of different cellular types based on gene expression; Microcircuitry analysis, proteins and receptor distributions and fibre architecture; Maps of cellular distributions, long-range axonal projections, and synaptic proteins; reconstructed morphologies of major neuron types; Whole-brain activation maps; Spatial organization principles in brain activation; Functional maps of cortical activity. • Brain Modelling data package. This package will include strategic data on quantitative description of synaptic connections on neurons; numbers, distributions and relative densities of cells in selected regions and where possible across the whole brain; statistical parameters characterizing particular cell types and spatial arrangements between neurons, glia and blood vessels; a high-resolution quantitative synaptic map of exemplar brain regions; EM blocks scans and volume analysis of exemplar brain regions with quantification of the neuropil organization; microcircuit analysis; functional maps of brain activation; morphological and physiological comparative studies of neurons between rodent and human.

D 12.5.2 First Opinions Report

WPs involved: WP12.1, WP12.2, WP12.3, WP12.4 & WP12.5 This is the first “opinions” reports formulating SP12 observations and recommendations about ethical and social issues arising during the course of HBP.

D 3.5.1 SP3 Systems and Cognitive Neuroscience - Results for SGA1 Period 1

WPs involved: WP3.1, WP3.2, WP3.3, WP3.4 WP3.5 & WP3.6 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • WP3.1 input Period 1: Studies in human brain imaging, rodent electrophysiology, optogenetics, and computational modelling of feedforward and feedback processing in the context of object recognition, and reinforcement learning. This report will include data on improvements made in modelling, experiments, techniques, and reports links to data repositories, use of Platforms as well as collaboration in Co-design projects. • WP3.2 input Period 1: Slow Wave Activity experiments, models and simulations and interaction with HBP platforms. This report will include usage statistics, TRLs, collaboration in Co-design projects and updates on data accessibility. • WP3.3 input Period 1: Studies in human brain imaging, rodent electrophysiology, optogenetics, computational modelling and robotics of concerning Episodic memory and multisensory integration, with Robot demos. This report will include data on improvements made in experiments & measurement techniques, use of the tools by colleagues in the field and/or in HBP, links to data repositories, collaboration in Co-design projects, and TRLs. • WP3.4 input Period 1: Studies in electrophysiology, imaging and behaviour in rodents and humans, and multilevel computational modelling. This report will include methods for assessing consciousness and testing of theories of consciousness; links to data repositories, collaboration in Co-design projects, use of platforms, usage statistics for tools delivered. • WP3.5 input Period 1: Data usage plan and impact of data on models. A detailed plan of data usage and the impact of data on models for the data will be generated • WP3.6 input Period 1: Scientific report on SP3 contributions to the development of the infrastructure and co-design projects. This report will include the development of network simulation models, data analysis methods and other tools, as well as constraints and requirements for further applications using HBP platforms, and usage statistics for tools delivered.

D 6.5.3 CDP2 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 4.6.2 WP4.6 EITN - Activity Report SGA1 Period 2

WPs involved: WP4.6 European Institute for Theoretical Neuroscience (EITN) activity report for M13-24

D 11.3.1 HBP Collaboratory Architecture

WPs involved: WP11.2, WP11.3, & WP7.5 • HBP Collaboratory Specification This will update related content in System Engineering Package sent by PCO (Jeff Muller) to the EC in March 2016 and address feedback points received from the EC. NOTE: PEER REVIEW REQUIRED

D 1.5.3 Detailed plan of data usage and the impact of generated data on models

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4 & WP1.5 From M1 to M24, a detailed plan for data usage via cross-SP working meetings will be drawn up. We will provide strategic structural and functional data to model and simulate the four major brain circuits and to set up their use in modelling at sub-cellular, cellular and circuit levels. Due to the possible constraints to produce new data in terms of time and resources, the data generated will be sent to the platforms as it is produced, i.e., not only the initial (and also intermediate), but also incomplete datasets to test all the pipelines. The identification of the gaps between what data is available and what data is needed will be implemented following a scale of priorities for SP2, SP3, SP4, SP5 and SP6. The modelling work and the coordination with the relevant SPs will ensure that data generated is strategic and is used in HBP models. This strategic data plan will be delivered in M24 and will be implemented in the SGA2 and will continue throughout the project.

D5.8.1 Strategy and Architecture for HBP data viewers

New Deliverable requested by EC Feedback from Review of 24 Oct 2016.

D 11.2.4 Report on cumulative expenditure incurred

In line with the reporting streamlining, this document will provide general cost incurred by the Consortium

D 2.7.2 SP2 Human Brain Organisation - Results for SGA1 Period 2

WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: Research results, tools and methods and contribution to initiate the platforms (for Period 2): This data, which will be deposited in the HBP Brain Atlas, will include: Maps of the vasculature; Microcircuitry analysis, proteins and receptor distributions and fibre architecture; Maps of cellular distributions and synaptic proteins; reconstructed morphologies of major neuron types; Functional maps of cortical activity.

D 10.7.1 Release Plan for the NRP for SGA1 and project implementation proposal

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4, WP10.5 & WP10.6 This document will describe the release plan for the SP10 Platform and will detail out the project implementation proposal. It will receive input from WP 10.1, 10.2, 10.3, 10.4, 10.5 and 10.6.

D 1.5.4 CDP1 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 5.6.1 Revised SP5 work plan for SGA1 (DPIT)

WPs involved: WP11.3, WP5.1, WP5.2, WP5.3, WP5.4, WP5.5 & WP5.6 plus WP1.5, WP2.7, WP3.5, WP4.5, WP6.5, WP7.6, WP8.6, WP9.5 & WP10.7 The SP5 Month 6 Deliverable D5.6.1 Revised SP5 work plan for SGA1 will form the basis for a special review as agreed between the EC and the HBP. The revisions in D5.6.1 are expected to require an amendment to the SGA1. The Deliverable needs to be accepted by the SIB prior to submission. The Month 6 Deliverable D5.6.1 will replace the Month 3 Deliverable foreseen earlier in the SGA negotiations. D5.6.1 will include: - Data Flow and Project Lifecycle: a listing of data related components from all use cases and datasets, from all SPs and CDPs, in the Project, documenting each Task/component. - A reviewed and agreed SP5 architecture, identifying all components, how they interact, who is responsible for which Task and component, and what each one does. It should cover both tools and supporting infrastructure. - A revised management and implementation plan for SP5 and data-related parts of other SPs, including a revised and expanded list of SP5 Milestones and Deliverables, featuring a visual roadmap / timetable. - A global HBP data-related work breakdown structure and PERT chart with prioritized workflows for SP5 in interaction with the entire HBP. - A comprehensive data curation plan for the entire HBP. - The division of responsibilities, setting out what is done by SP5 and what is done by other SPs. - A description of FeDaPP, its elements and its role in the HBP, along with its interaction with the NIP. - Plans for interaction with external partners. - A budget plan, allocating both money and manpower and broken down, by SP, WP, Task and Partner.

D 9.5.1 SP9 Neuromorphic Computing Platform - Results for SGA1 Period 1

WPs involved: WP9.1, WP9.2, WP9.3, WP9.4 & WP9.5 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • Neuromorphic Computing Platform: Intermediate Status description report (Period 1). Description of the status of the full range of the neuromorphic computing platform (standalone systems and big platform systems) including the software stack and a guidebook update release.

D 5.6.2 HBP Platform Architecture (DPIT)

WPs involved: WP5.6, WP7.5, WP11.2 & WP11.3 Overall platform architecture of HBP, including: • FedApp.and its funding (EC & other sources) • Target TRL levels for each platform • RI construction plan, with detailed work breakdown structure • RI user support This will update related content in System Engineering Package sent by PCO (Jeff Muller) to the EC in March 2016 and address feedback points received from the EC. NOTE: PEER REVIEW REQUIRED

D 1.5.1 SP1 Mouse Brain Organisation - Results for SGA1 Period 1

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4 & WP1.5 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • Brain Atlas data package (Period 1). This data, which will be deposited in the HBP Brain Atlas, will include: Maps of the vasculature; Whole-brain maps of different cellular types based on gene expression; Microcircuitry analysis, proteins and receptor distributions and fibre architecture; Maps of cellular distributions, long-range axonal projections, and synaptic proteins; reconstructed morphologies of major neuron types; Whole-brain activation maps; Spatial organization principles in brain activation; Functional maps of cortical activity. • Brain Modelling data package (Period 1). This package will include strategic data on quantitative description of synaptic connections on neurons; numbers, distributions and relative densities of cells in selected regions and where possible across the whole brain; statistical parameters characterizing particular cell types and spatial arrangements between neurons, glia and blood vessels; a high-resolution quantitative synaptic map of exemplar brain regions; EM blocks scans and volume analysis of exemplar brain regions with quantification of the neuropil organization; microcircuit analysis; functional maps of brain activation; morphological and physiological comparative studies of neurons between rodent and human.

D 4.6.1 WP4.6 EITN - Activity report SGA1 Period 1

WPs involved: WP4.6 European Institute for Theoretical Neuroscience (EITN) activity report for M1-12

D 11.2.1 Central Services IT / Web Tools Specifications

WPs involved: WP11.2, WP11.3, WP11.4 & WP11.5 This document will compile the specifications for the following IT / Web Tools: 1. HBP public website redesign 2. Education Programme website redesign 3. ERP knowledge management tool for PCO Explain ecosystem of PCO IT coordination tools

D 2.7.4 CDP4 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 8.6.4 SP8 Medical Informatics Platform – MIP validation plan

SP8 Medical Informatics Platform – MIP validation plan

D 5.8.2 SP5 Neuroinformatics Platform - Results for SGA1 Period 1

Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP Products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: Research results, tools and methods and contribution to initiate the Platforms (for Period 1)

D 8.6.2 SP8 Medical Informatics Platform - Results for SGA1 Period 1

WPs involved: WP8.1, WP8.2, WP8.3, WP8.4, WP8.5 & WP8.6 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • Medical Informatics Platform v1.5 (Period 1). This deliverable will consist of the second formal release of the Medical Informatics Platform and related documentation (Release notes, user guide, technical documentation, data management plan and deployment plan). The platform, accessible to end-users via the HBP Collaboratory, will provide access to the clinical infrastructure (WP8.1). The platform will provide access to the user community (neuroscientists, clinicians, data scientists) thought web apps and microservices (WP8.5) to the tools developed in WP8.3/8.4/8.5. The platform will also include services for engaging the general public.

D 10.7.3 SP10 Neurorobotics Platform - Results for SGA1 Period 2

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4, WP10.5 & WP10.6 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Public release NR Platform and software with support for physics-based light, musculoskeletal robot designer, graphical brain-body integrator. This deliverable will point to the public release of the SP10 platform and all corresponding software packages at the end of the SGA1.

D 8.6.3 SP8 Medical Informatics Platform - Results for SGA1 Period 2

WPs involved: WP8.1, WP8.2, WP8.3, WP8.4, WP8.5 & WP8.6 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Medical Informatics Platform v2 (Period 2).This deliverable will consist of the second formal release of the Medical Informatics Platform and related documentation (Release notes, user guide, technical documentation, data management plan and deployment plan). The platform, accessible to end-users via the HBP Collaboratory, will provide access to the clinical infrastructure (WP8.1). The platform will provide access to the user community (neuroscientists, clinicians, data scientists) thought web apps and microservices (WP8.5) to the tools developed in WP8.3/8.4/8.5. The platform will also include services for engaging the general public.

D 6.5.1 SP6 Brain Simulation Platform - Results for SGA1 Period 1

WPs involved: WP6.1, WP6.2, WP6.3, WP6.4 & WP6.5 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website.

D 7.6.2 SP7 High-Performance Analytics and Computing Platform - Results for SGA1 Period 1

WPs involved: WP7.1, WP7.2, WP7.3, WP7.4, WP7.5 & WP7.6 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • High Performance Analytics and Computing Platform v1.5 (Period 1): This deliverable will consist of the second formal release of the High Performance Analytics and Computing Platform and related documentation. The platform, accessible to end users through the HBP Collaboratory, will provide the neuroscience community with access to federated HPC and Cloud resources, common developer and software deployment services, SimLab-style support for the porting of applications to novel hardware architectures, the simulator NEST as a service and user support. It will incorporate results from WP7.1, WP7.2, WP7.3 and WP7.4.

D 10.7.2 SP10 Neurorobotics Platform - Results for SGA1 Period 1

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4, WP10.5 & WP10.6 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • NRP roadmap for SGA2: This document will describe the roadmap for the SP10 platform in SGA2 • Effective methods for transferring simulated control architectures to real robots calibration, cross-compilation and remote control. • Public release of NR platform and software with partial implementation of soft body collision, muscles, physics and HMD/CAVE visualization.

D 6.5.2 SP6 Brain Simulation Platform - Results for SGA1 Period 2

WPs involved: WP6.1, WP6.2, WP6.3, WP6.4 & WP6.5 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Brain Simulation Platform v2: This deliverable will consist of the second formal release of the Brain Simulation Platform and related documentation. The Platform, accessible to end-users via the HBP Collaboratory, will provide access to tools, apps and services developed in WP6.3 and WP6.4 (based on co-design drivers from WP6.1 and WP6.2, as well as CDP1 and CDP2). • Scaffold model Collabs release v2: This deliverable will expose the latest releases of models and simulations of the scaffold modelling activities of WP6.1 and WP6.2 in their respective Collabs, and showcase the underlying workflows of the Brain Simulation Platform. • CDP2 Collab release v2: CDP2 Deliverable: This deliverable will expose the models and simulations of CDP2 in the respective Collab and showcase the underlying workflows of the Brain Simulation Platform and other platforms.

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Publications

High-Performance Scientific Computing

Author(s): Edoardo Di Napoli, Marc-André Hermanns, Hristo Iliev, Andreas Lintermann, Alexander Peyser
Published in: Lecture Notes in Computer Science, 2017
DOI: 10.1007/978-3-319-53862-4

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1

Author(s): Sue Denham, Panayiota Poirazi, Erik De Schutter, Karl Friston, Ho Ka Chan, Thomas Nowotny, Dongqi Han, Sungho Hong, Sophie Rosay, Tanja Wernle, Alessandro Treves, Sarah Goethals, Romain Brette, Tomas Van Pottelbergh, Rodolphe Sepulchre, Alex D. Bird, Hermann Cuntz, Pedro J. Gonçalves, Jan-Matthis Lueckmann, Giacomo Bassetto, Marcel Nonnenmacher, Jakob H. Macke, Audrey J. Sederberg, Jason N. MacLe
Published in: BMC Neuroscience, Issue 18/S1, 2017, ISSN 1471-2202
DOI: 10.1186/s12868-017-0370-3

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2

Author(s): Leonid L. Rubchinsky, Sungwoo Ahn, Wouter Klijn, Ben Cumming, Stuart Yates, Vasileios Karakasis, Alexander Peyser, Marmaduke Woodman, Sandra Diaz-Pier, James Deraeve, Eliana Vassena, William Alexander, David Beeman, Pawel Kudela, Dana Boatman-Reich, William S. Anderson, Niceto R. Luque, Francisco Naveros, Richard R. Carrillo, Eduardo Ros, Angelo Arleo, Jacob Huth, Koki Ichinose, Jihoon Park, Yuji
Published in: BMC Neuroscience, Issue 18/S1, 2017, ISSN 1471-2202
DOI: 10.1186/s12868-017-0371-2

A Combination of Machine Learning and Cerebellar-like Neural Networks for the Motor Control and Motor Learning of the Fable Modular Robot

Author(s): Ismael Baira Ojeda, Silvia Tolu, Moisés Pacheco, David Johan Christensen, Henrik Hautop Lund
Published in: Journal of Robotics, Networking and Artificial Life, Issue 4/1, 2017, Page(s) 62, ISSN 2352-6386
DOI: 10.2991/jrnal.2017.4.1.14

Fast–Slow Bursters in the Unfolding of a High Codimension Singularity and the Ultra-slow Transitions of Classes

Author(s): Maria Luisa Saggio, Andreas Spiegler, Christophe Bernard, Viktor K. Jirsa
Published in: The Journal of Mathematical Neuroscience, Issue 7/1, 2017, ISSN 2190-8567
DOI: 10.1186/s13408-017-0050-8

Predicting the spatiotemporal diversity of seizure propagation and termination in human focal epilepsy

Author(s): Timothée Proix, Viktor K. Jirsa, Fabrice Bartolomei, Maxime Guye, Wilson Truccolo
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-02973-y

Whole-brain analytic measures of network communication reveal increased structure-function correlation in right temporal lobe epilepsy

Author(s): Jonathan Wirsich, Alistair Perry, Ben Ridley, Timothée Proix, Mathieu Golos, Christian Bénar, Jean-Philippe Ranjeva, Fabrice Bartolomei, Michael Breakspear, Viktor Jirsa, Maxime Guye
Published in: NeuroImage: Clinical, Issue 11, 2016, Page(s) 707-718, ISSN 2213-1582
DOI: 10.1016/j.nicl.2016.05.010

Defining epileptogenic networks: Contribution of SEEG and signal analysis

Author(s): Fabrice Bartolomei, Stanislas Lagarde, Fabrice Wendling, Aileen McGonigal, Viktor Jirsa, Maxime Guye, Christian Bénar
Published in: Epilepsia, Issue 58/7, 2017, Page(s) 1131-1147, ISSN 0013-9580
DOI: 10.1111/epi.13791

A new neuroinformatics approach to personalized medicine in neurology

Author(s): Maria I. Falcon, Viktor Jirsa, Ana Solodkin
Published in: Current Opinion in Neurology, Issue 29/4, 2016, Page(s) 429-436, ISSN 1350-7540
DOI: 10.1097/WCO.0000000000000344

Resting state brain dynamics and its transients: a combined TMS-EEG study

Author(s): Mireille Bonnard, Sophie Chen, Jérôme Gaychet, Marcel Carrere, Marmaduke Woodman, Bernard Giusiano, Viktor Jirsa
Published in: Scientific Reports, Issue 6/1, 2016, ISSN 2045-2322
DOI: 10.1038/srep31220

Structure and Topology Dynamics of Hyper-Frequency Networks during Rest and Auditory Oddball Performance

Author(s): Viktor Müller, Dionysios Perdikis, Timo von Oertzen, Rita Sleimen-Malkoun, Viktor Jirsa, Ulman Lindenberger
Published in: Frontiers in Computational Neuroscience, Issue 10, 2016, ISSN 1662-5188
DOI: 10.3389/fncom.2016.00108

Sex differences in the functional connectivity of the amygdalae in association with cortisol

Author(s): Lydia Kogler, Veronika I. Müller, Eva-Maria Seidel, Roland Boubela, Klaudius Kalcher, Ewald Moser, Ute Habel, Ruben C. Gur, Simon B. Eickhoff, Birgit Derntl
Published in: NeuroImage, Issue 134, 2016, Page(s) 410-423, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2016.03.064

Correlations Between Personality and Brain Structure: A Crucial Role of Gender

Author(s): Alessandra D. Nostro, Veronika I. Müller, Andrew T. Reid, Simon B. Eickhoff
Published in: Cerebral Cortex, 2016, ISSN 1047-3211
DOI: 10.1093/cercor/bhw191

Behavior, sensitivity, and power of activation likelihood estimation characterized by massive empirical simulation

Author(s): Simon B. Eickhoff, Thomas E. Nichols, Angela R. Laird, Felix Hoffstaedter, Katrin Amunts, Peter T. Fox, Danilo Bzdok, Claudia R. Eickhoff
Published in: NeuroImage, Issue 137, 2016, Page(s) 70-85, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2016.04.072

How do parcellation size and short-range connectivity affect dynamics in large-scale brain network models?

Author(s): Timothée Proix, Andreas Spiegler, Michael Schirner, Simon Rothmeier, Petra Ritter, Viktor K. Jirsa
Published in: NeuroImage, Issue 142, 2016, Page(s) 135-149, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2016.06.016

Heterogeneity of time delays determines synchronization of coupled oscillators

Author(s): Spase Petkoski, Andreas Spiegler, Timothée Proix, Parham Aram, Jean-Jacques Temprado, Viktor K. Jirsa
Published in: Physical Review E, Issue 94/1, 2016, ISSN 2470-0045
DOI: 10.1103/PhysRevE.94.012209

Resting-state test–retest reliability of a priori defined canonical networks over different preprocessing steps

Author(s): Deepthi P. Varikuti, Felix Hoffstaedter, Sarah Genon, Holger Schwender, Andrew T. Reid, Simon B. Eickhoff
Published in: Brain Structure and Function, Issue 222/3, 2017, Page(s) 1447-1468, ISSN 1863-2653
DOI: 10.1007/s00429-016-1286-x

Estimating Fiber Orientation Distribution Functions in 3D-Polarized Light Imaging

Author(s): Markus Axer, Sven Strohmer, David Gräßel, Oliver Bücker, Melanie Dohmen, Julia Reckfort, Karl Zilles, Katrin Amunts
Published in: Frontiers in Neuroanatomy, Issue 10, 2016, ISSN 1662-5129
DOI: 10.3389/fnana.2016.00040

Spatial normalization of brain images and beyond

Author(s): J.-F. Mangin, J. Lebenberg, S. Lefranc, N. Labra, G. Auzias, M. Labit, M. Guevara, H. Mohlberg, P. Roca, P. Guevara, J. Dubois, F. Leroy, G. Dehaene-Lambertz, A. Cachia, T. Dickscheid, O. Coulon, C. Poupon, D. Rivière, K. Amunts, Z.Y. Sun
Published in: Medical Image Analysis, Issue 33, 2016, Page(s) 127-133, ISSN 1361-8415
DOI: 10.1016/j.media.2016.06.008

Functional Decoding and Meta-analytic Connectivity Modeling in Adult Attention-Deficit/Hyperactivity Disorder

Author(s): Samuele Cortese, F. Xavier Castellanos, Claudia R. Eickhoff, Giulia D’Acunto, Gabriele Masi, Peter T. Fox, Angela R. Laird, Simon B. Eickhoff
Published in: Biological Psychiatry, Issue 80/12, 2016, Page(s) 896-904, ISSN 0006-3223
DOI: 10.1016/j.biopsych.2016.06.014

Layer-specific cholinergic control of human and mouse cortical synaptic plasticity

Author(s): Matthijs B. Verhoog, Joshua Obermayer, Christian A. Kortleven, René Wilbers, Jordi Wester, Johannes C. Baayen, Christiaan P. J. De Kock, Rhiannon M. Meredith, Huibert D. Mansvelder
Published in: Nature Communications, Issue 7, 2016, Page(s) 12826, ISSN 2041-1723
DOI: 10.1038/ncomms12826

High-frequency oscillations in human and monkey neocortex during the wake–sleep cycle

Author(s): Michel Le Van Quyen, Lyle E. Muller, Bartosz Telenczuk, Eric Halgren, Sydney Cash, Nicholas G. Hatsopoulos, Nima Dehghani, Alain Destexhe
Published in: Proceedings of the National Academy of Sciences, Issue 113/33, 2016, Page(s) 9363-9368, ISSN 0027-8424
DOI: 10.1073/pnas.1523583113

Stochastic inference with spiking neurons in the high-conductance state

Author(s): Mihai A. Petrovici, Johannes Bill, Ilja Bytschok, Johannes Schemmel, Karlheinz Meier
Published in: Physical Review E, Issue 94/4, 2016, Page(s) 42312, ISSN 2470-0045
DOI: 10.1103/PhysRevE.94.042312

Groupwise connectivity-based parcellation of the whole human cortical surface using watershed-driven dimension reduction

Author(s): Sandrine Lefranc, Pauline Roca, Matthieu Perrot, Cyril Poupon, Denis Le Bihan, Jean-François Mangin, Denis Rivière
Published in: Medical Image Analysis, Issue 30, 2016, Page(s) 11-29, ISSN 1361-8415
DOI: 10.1016/j.media.2016.01.003

Neuroimaging Research: From Null-Hypothesis Falsification to Out-of-Sample Generalization

Author(s): D. Bzdok, G. Varoquaux, B. Thirion
Published in: Educational and Psychological Measurement, 2016, ISSN 0013-1644
DOI: 10.1177/0013164416667982

ViSimpl: Multi-View Visual Analysis of Brain Simulation Data

Author(s): Sergio E. Galindo, Pablo Toharia, Oscar D. Robles, Luis Pastor
Published in: Frontiers in Neuroinformatics, Issue 10, 2016, ISSN 1662-5196
DOI: 10.3389/fninf.2016.00044

Implementation errors in the GingerALE Software: Description and recommendations

Author(s): Simon B. Eickhoff, Angela R. Laird, P. Mickle Fox, Jack L. Lancaster, Peter T. Fox
Published in: Human Brain Mapping, Issue 38/1, 2017, Page(s) 7-11, ISSN 1065-9471
DOI: 10.1002/hbm.23342

3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas

Author(s): Nicole Schubert, Markus Axer, Martin Schober, Anh-Minh Huynh, Marcel Huysegoms, Nicola Palomero-Gallagher, Jan G. Bjaalie, Trygve B. Leergaard, Mehmet E. Kirlangic, Katrin Amunts, Karl Zilles
Published in: Frontiers in Neuroanatomy, Issue 10, 2016, ISSN 1662-5129
DOI: 10.3389/fnana.2016.00051

Functional Mechanisms of Recovery after Chronic Stroke: Modeling with the Virtual Brain

Author(s): M. I. Falcon, J. D. Riley, V. Jirsa, A. R. McIntosh, E. Elinor Chen, A. Solodkin
Published in: eNeuro, Issue 3/2, 2016, ISSN 2373-2822
DOI: 10.1523/ENEURO.0158-15.2016

Unique membrane properties and enhanced signal processing in human neocortical neurons

Author(s): Guy Eyal, Matthijs B Verhoog, Guilherme Testa-Silva, Yair Deitcher, Johannes C Lodder, Ruth Benavides-Piccione, Juan Morales, Javier DeFelipe, Christiaan PJ de Kock, Huibert D Mansvelder, Idan Segev
Published in: eLife, Issue 5, 2016, ISSN 2050-084X
DOI: 10.7554/eLife.16553

Imbalance in subregional connectivity of the right temporoparietal junction in major depression

Author(s): Timm B. Poeppl, Veronika I. Müller, Felix Hoffstaedter, Danilo Bzdok, Angela R. Laird, Peter T. Fox, Berthold Langguth, Rainer Rupprecht, Christian Sorg, Valentin Riedl, Roberto Goya-Maldonado, Oliver Gruber, Simon B. Eickhoff
Published in: Human Brain Mapping, Issue 37/8, 2016, Page(s) 2931-2942, ISSN 1065-9471
DOI: 10.1002/hbm.23217

Selective Activation of Resting-State Networks following Focal Stimulation in a Connectome-Based Network Model of the Human Brain

Author(s): A. Spiegler, E. C. A. Hansen, C. Bernard, A. R. McIntosh, V. K. Jirsa
Published in: eNeuro, Issue 3/5, 2016, ISSN 2373-2822
DOI: 10.1523/ENEURO.0068-16.2016

Hybrid Scheme for Modeling Local Field Potentials from Point-Neuron Networks

Author(s): Espen Hagen, David Dahmen, Maria L. Stavrinou, Henrik Lindén, Tom Tetzlaff, Sacha J. van Albada, Sonja Grün, Markus Diesmann, Gaute T. Einevoll
Published in: Cerebral Cortex, Issue 26/12, 2016, Page(s) 4461-4496, ISSN 1047-3211
DOI: 10.1093/cercor/bhw237

The Human Brainnetome Atlas: A New Brain Atlas Based on Connectional Architecture

Author(s): Lingzhong Fan, Hai Li, Junjie Zhuo, Yu Zhang, Jiaojian Wang, Liangfu Chen, Zhengyi Yang, Congying Chu, Sangma Xie, Angela R. Laird, Peter T. Fox, Simon B. Eickhoff, Chunshui Yu, Tianzi Jiang
Published in: Cerebral Cortex, Issue 26/8, 2016, Page(s) 3508-3526, ISSN 1047-3211
DOI: 10.1093/cercor/bhw157

Different involvement of subregions within dorsal premotor and medial frontal cortex for pro- and antisaccades

Author(s): Edna C. Cieslik, Isabelle Seidler, Angela R. Laird, Peter T. Fox, Simon B. Eickhoff
Published in: Neuroscience & Biobehavioral Reviews, Issue 68, 2016, Page(s) 256-269, ISSN 0149-7634
DOI: 10.1016/j.neubiorev.2016.05.012

A neural circuit encoding sexual preference in humans

Author(s): Timm B. Poeppl, Berthold Langguth, Rainer Rupprecht, Angela R. Laird, Simon B. Eickhoff
Published in: Neuroscience & Biobehavioral Reviews, Issue 68, 2016, Page(s) 530-536, ISSN 0149-7634
DOI: 10.1016/j.neubiorev.2016.06.025

Formal Models of the Network Co-occurrence Underlying Mental Operations

Author(s): Danilo Bzdok, Gaël Varoquaux, Olivier Grisel, Michael Eickenberg, Cyril Poupon, Bertrand Thirion
Published in: PLOS Computational Biology, Issue 12/6, 2016, Page(s) e1004994, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1004994

The Virtual Epileptic Patient: Individualized whole-brain models of epilepsy spread

Author(s): V.K. Jirsa, T. Proix, D. Perdikis, M.M. Woodman, H. Wang, J. Gonzalez-Martinez, C. Bernard, C. Bénar, M. Guye, P. Chauvel, F. Bartolomei
Published in: NeuroImage, Issue 145, 2017, Page(s) 377-388, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2016.04.049

Synchronous Spike Patterns in Macaque Motor Cortex during an Instructed-Delay Reach-to-Grasp Task

Author(s): E. Torre, P. Quaglio, M. Denker, T. Brochier, A. Riehle, S. Grun
Published in: Journal of Neuroscience, Issue 36/32, 2016, Page(s) 8329-8340, ISSN 0270-6474
DOI: 10.1523/JNEUROSCI.4375-15.2016

Handling Metadata in a Neurophysiology Laboratory

Author(s): Lyuba Zehl, Florent Jaillet, Adrian Stoewer, Jan Grewe, Andrey Sobolev, Thomas Wachtler, Thomas G. Brochier, Alexa Riehle, Michael Denker, Sonja Grün
Published in: Frontiers in Neuroinformatics, Issue 10, 2016, ISSN 1662-5196
DOI: 10.3389/fninf.2016.00026

ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains

Author(s): Emiliano Torre, Carlos Canova, Michael Denker, George Gerstein, Moritz Helias, Sonja Grün
Published in: PLOS Computational Biology, Issue 12/7, 2016, Page(s) e1004939, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1004939

Seeing it all: Convolutional network layers map the function of the human visual system

Author(s): Michael Eickenberg, Alexandre Gramfort, Gaël Varoquaux, Bertrand Thirion
Published in: NeuroImage, Issue 152, 2017, Page(s) 184-194, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2016.10.001

[Re] Cellular and Network Mechanisms of Slow Oscillatory Activity (<1 Hz) and Wave Propagations in a Cortical Network Model

Author(s): Maksimov A, van Albada S, Diesmann M
Published in: Rescience, 2016, ISSN 2430-3658
DOI: 10.5281/zenodo.161526

Exploring the Usefulness of Formal Concept Analysis for Robust Detection of Spatio-temporal Spike Patterns in Massively Parallel Spike Trains

Author(s): Alper Yegenoglu, Pietro Quaglio, Emiliano Torre, Sonja Grün, Dominik Endres
Published in: Graph-Based Representation and Reasoning, 2016, Page(s) 3-16, ISSN 0302-9743
DOI: 10.1007/978-3-319-40985-6_1

The Spinal Cord Has an Intrinsic System for the Control of pH

Author(s): Elham Jalalvand, Brita Robertson, Hervé Tostivint, Peter Wallén, Sten Grillner
Published in: Current Biology, Issue 26/10, 2016, Page(s) 1346-1351, ISSN 0960-9822
DOI: 10.1016/j.cub.2016.03.048

Embodied neurology: an integrative framework for neurological disorders

Author(s): Patrick Freund, Karl Friston, Alan J. Thompson, Klaas E. Stephan, John Ashburner, Dominik R. Bach, Zoltan Nagy, Gunther Helms, Bogdan Draganski, Siawoosh Mohammadi, Martin E. Schwab, Armin Curt, Nikolaus Weiskopf
Published in: Brain, Issue 139/6, 2016, Page(s) 1855-1861, ISSN 0006-8950
DOI: 10.1093/brain/aww076

Big Science, Brain Simulation, and Neuroethics

Author(s): Michele Farisco, Kathinka Evers, Arleen Salles
Published in: AJOB Neuroscience, Issue 7/1, 2016, Page(s) 28-30, ISSN 2150-7740
DOI: 10.1080/21507740.2015.1135834

Premature changes in neuronal excitability account for hippocampal network impairment and autistic-like behavior in neonatal BTBR T+tf/J mice

Author(s): Giada Cellot, Laura Maggi, Maria Amalia Di Castro, Myriam Catalano, Rosanna Migliore, Michele Migliore, Maria Luisa Scattoni, Gemma Calamandrei, Enrico Cherubini
Published in: Scientific Reports, Issue 6/1, 2016, ISSN 2045-2322
DOI: 10.1038/srep31696

Searching for principles of brain computation

Author(s): Wolfgang Maass
Published in: Current Opinion in Behavioral Sciences, Issue 11, 2016, Page(s) 81-92, ISSN 2352-1546
DOI: 10.1016/j.cobeha.2016.06.003

The laminar integration of sensory inputs with feedback signals in human cortex

Author(s): Lucy S. Petro, Lars Muckli
Published in: Brain and Cognition, Issue 112, 2017, Page(s) 54-57, ISSN 0278-2626
DOI: 10.1016/j.bandc.2016.06.007

Worldwide initiatives to advance brain research

Author(s): Sten Grillner, Nancy Ip, Christof Koch, Walter Koroshetz, Hideyuki Okano, Miri Polachek, Mu-ming Poo, Terrence J Sejnowski
Published in: Nature Neuroscience, Issue 19/9, 2016, Page(s) 1118-1122, ISSN 1097-6256
DOI: 10.1038/nn.4371

Benchmarking Spike-Based Visual Recognition: A Dataset and Evaluation

Author(s): Qian Liu, Garibaldi Pineda-García, Evangelos Stromatias, Teresa Serrano-Gotarredona, Steve B. Furber
Published in: Frontiers in Neuroscience, Issue 10, 2016, ISSN 1662-453X
DOI: 10.3389/fnins.2016.00496

Active subthreshold dendritic conductances shape the local field potential

Author(s): Torbjørn V. Ness, Michiel W. H. Remme, Gaute T. Einevoll
Published in: The Journal of Physiology, Issue 594/13, 2016, Page(s) 3809-3825, ISSN 0022-3751
DOI: 10.1113/JP272022

Texture Segregation Causes Early Figure Enhancement and Later Ground Suppression in Areas V1 and V4 of Visual Cortex

Author(s): Jasper Poort, Matthew W. Self, Bram van Vugt, Hemi Malkki, Pieter R. Roelfsema
Published in: Cerebral Cortex, Issue 26/10, 2016, Page(s) 3964-3976, ISSN 1047-3211
DOI: 10.1093/cercor/bhw235

Dendritic-branching angles of pyramidal neurons of the human cerebral cortex

Author(s): Pablo Fernandez-Gonzalez, Ruth Benavides-Piccione, Ignacio Leguey, Concha Bielza, Pedro Larrañaga, Javier DeFelipe
Published in: Brain Structure and Function, Issue 222/4, 2017, Page(s) 1847-1859, ISSN 1863-2653
DOI: 10.1007/s00429-016-1311-0

Comments and General Discussion on “The Anatomical Problem Posed by Brain Complexity and Size: A Potential Solution”

Author(s): Javier DeFelipe, Rodney J. Douglas, Sean L. Hill, Ed S. Lein, Kevan A. C. Martin, Kathleen S. Rockland, Idan Segev, Gordon M. Shepherd, Gábor Tamás
Published in: Frontiers in Neuroanatomy, Issue 10, 2016, ISSN 1662-5129
DOI: 10.3389/fnana.2016.00060

Shining Light on an mGlu5 Photoswitchable NAM: A Theoretical Perspective

Author(s): James A.R. Dalton, Isaias Lans, Xavier Rovira, Fanny Malhaire, Xavier Gómez-Santacana, Silvia Pittolo, Pau Gorostiza, Amadeu Llebaria, Cyril Goudet, Jean-Philippe Pin, Jesús Giraldo
Published in: Current Neuropharmacology, Issue 14/5, 2016, Page(s) 441-454, ISSN 1570-159X
DOI: 10.2174/1570159X13666150407231417

Properties and dynamics of inhibitory synaptic communication within the CA3 microcircuits of pyramidal cells and interneurons expressing parvalbumin or cholecystokinin

Author(s): Z. Kohus, S. Káli, L. Rovira-Esteban, D. Schlingloff, O. Papp, T. F. Freund, N. Hájos, A. I. Gulyás
Published in: The Journal of Physiology, Issue 594/13, 2016, Page(s) 3745-3774, ISSN 0022-3751
DOI: 10.1113/JP272231

Spatiotemporal interplay between multisensory excitation and recruited inhibition in the lamprey optic tectum

Author(s): Andreas A Kardamakis, Juan Pérez-Fernández, Sten Grillner
Published in: eLife, Issue 5, 2016, ISSN 2050-084X
DOI: 10.7554/eLife.16472

Comparative electrostatic analysis of adenylyl cyclase for isoform dependent regulation properties

Author(s): Rudi Tong, Rebecca C. Wade, Neil J. Bruce
Published in: Proteins: Structure, Function, and Bioinformatics, Issue 84/12, 2016, Page(s) 1844-1858, ISSN 0887-3585
DOI: 10.1002/prot.25167

Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration

Author(s): Anu G. Nair, Upinder S. Bhalla, Jeanette Hellgren Kotaleski
Published in: PLOS Computational Biology, Issue 12/9, 2016, Page(s) e1005080, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1005080

A Framework for Coupled Simulations of Robots and Spiking Neuronal Networks

Author(s): Georg Hinkel, Henning Groenda, Sebastian Krach, Lorenzo Vannucci, Oliver Denninger, Nino Cauli, Stefan Ulbrich, Arne Roennau, Egidio Falotico, Marc-Oliver Gewaltig, Alois Knoll, Rüdiger Dillmann, Cecilia Laschi, Ralf Reussner
Published in: Journal of Intelligent & Robotic Systems, Issue 85/1, 2017, Page(s) 71-91, ISSN 0921-0296
DOI: 10.1007/s10846-016-0412-6

Neural Activity Elicited by a Cognitive Task can be Detected in Single-Trials with Simultaneous Intracerebral EEG-fMRI Recordings

Author(s): Mani Saignavongs, Carolina Ciumas, Mathilde Petton, Romain Bouet, Sébastien Boulogne, Sylvain Rheims, David W. Carmichael, Jean-Philippe Lachaux, Philippe Ryvlin
Published in: International Journal of Neural Systems, Issue 27/01, 2017, Page(s) 1750001, ISSN 0129-0657
DOI: 10.1142/S0129065717500010

OptoGluNAM4.1, a Photoswitchable Allosteric Antagonist for Real-Time Control of mGlu4 Receptor Activity

Author(s): Xavier Rovira, Ana Trapero, Silvia Pittolo, Charleine Zussy, Adèle Faucherre, Chris Jopling, Jesús Giraldo, Jean-Philippe Pin, Pau Gorostiza, Cyril Goudet, Amadeu Llebaria
Published in: Cell Chemical Biology, Issue 23/8, 2016, Page(s) 929-934, ISSN 2451-9456
DOI: 10.1016/j.chembiol.2016.06.013

Optical control of endogenous receptors and cellular excitability using targeted covalent photoswitches

Author(s): Mercè Izquierdo-Serra, Antoni Bautista-Barrufet, Ana Trapero, Aida Garrido-Charles, Ariadna Díaz-Tahoces, Nuria Camarero, Silvia Pittolo, Sergio Valbuena, Ariadna Pérez-Jiménez, Marina Gay, Alejandro García-Moll, Carles Rodríguez-Escrich, Juan Lerma, Pedro de la Villa, Eduardo Fernández, Miquel À Pericàs, Amadeu Llebaria, Pau Gorostiza
Published in: Nature Communications, Issue 7, 2016, Page(s) 12221, ISSN 2041-1723
DOI: 10.1038/ncomms12221

Correlated Fluctuations in Strongly Coupled Binary Networks Beyond Equilibrium

Author(s): David Dahmen, Hannah Bos, Moritz Helias
Published in: Physical Review X, Issue 6/3, 2016, ISSN 2160-3308
DOI: 10.1103/PhysRevX.6.031024

FHF-independent conduction of action potentials along the leak-resistant cerebellar granule cell axon

Author(s): Katarzyna Dover, Christopher Marra, Sergio Solinas, Marko Popovic, Sathyaa Subramaniyam, Dejan Zecevic, Egidio D’Angelo, Mitchell Goldfarb
Published in: Nature Communications, Issue 7, 2016, Page(s) 12895, ISSN 2041-1723
DOI: 10.1038/ncomms12895

Learning maximum entropy models from finite-size data sets: A fast data-driven algorithm allows sampling from the posterior distribution

Author(s): Ulisse Ferrari
Published in: Physical Review E, Issue 94/2, 2016, ISSN 2470-0045
DOI: 10.1103/PhysRevE.94.023301

Optimizing Network Traffic for Spiking Neural Network Simulations on Densely Interconnected Many-Core Neuromorphic Platforms

Author(s): Gianvito Urgese, Francesco Barchi, Enrico Macii, Andrea Acquaviva
Published in: IEEE Transactions on Emerging Topics in Computing, 2016, Page(s) 1-1, ISSN 2168-6750
DOI: 10.1109/TETC.2016.2579605

PSD95 nanoclusters are postsynaptic building blocks in hippocampus circuits

Author(s): Matthew J. Broadhead, Mathew H. Horrocks, Fei Zhu, Leila Muresan, Ruth Benavides-Piccione, Javier DeFelipe, David Fricker, Maksym V. Kopanitsa, Rory R. Duncan, David Klenerman, Noboru H. Komiyama, Steven F. Lee, Seth G. N. Grant
Published in: Scientific Reports, Issue 6/1, 2016, ISSN 2045-2322
DOI: 10.1038/srep24626

BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience

Author(s): Werner Van Geit, Michael Gevaert, Giuseppe Chindemi, Christian Rössert, Jean-Denis Courcol, Eilif B. Muller, Felix Schürmann, Idan Segev, Henry Markram
Published in: Frontiers in Neuroinformatics, Issue 10, 2016, ISSN 1662-5196
DOI: 10.3389/fninf.2016.00017

Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations

Author(s): Ekaterina Brocke, Upinder S. Bhalla, Mikael Djurfeldt, Jeanette Hellgren Kotaleski, Michael Hanke
Published in: Frontiers in Computational Neuroscience, Issue 10, 2016, ISSN 1662-5188
DOI: 10.3389/fncom.2016.00097

Oscillation-Driven Spike-Timing Dependent Plasticity Allows Multiple Overlapping Pattern Recognition in Inhibitory Interneuron Networks

Author(s): Jesús A. Garrido, Niceto R. Luque, Silvia Tolu, Egidio D’Angelo
Published in: International Journal of Neural Systems, Issue 26/05, 2016, Page(s) 1650020, ISSN 0129-0657
DOI: 10.1142/S0129065716500209

Identifying Anatomical Origins of Coexisting Oscillations in the Cortical Microcircuit

Author(s): Hannah Bos, Markus Diesmann, Moritz Helias
Published in: PLOS Computational Biology, Issue 12/10, 2016, Page(s) e1005132, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1005132

Computational Modeling of Single Neuron Extracellular Electric Potentials and Network Local Field Potentials using LFPsim

Author(s): Harilal Parasuram, Bipin Nair, Egidio D'Angelo, Michael Hines, Giovanni Naldi, Shyam Diwakar
Published in: Frontiers in Computational Neuroscience, Issue 10, 2016, ISSN 1662-5188
DOI: 10.3389/fncom.2016.00065

Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON

Author(s): William W. Lytton, Alexandra H. Seidenstein, Salvador Dura-Bernal, Robert A. McDougal, Felix Schürmann, Michael L. Hines
Published in: Neural Computation, Issue 28/10, 2016, Page(s) 2063-2090, ISSN 0899-7667
DOI: 10.1162/NECO_a_00876

Proactive epigenesis and ethical innovation

Author(s): Kathinka Evers, Jean‐Pierre Changeux
Published in: EMBO reports, Issue 17/10, 2016, Page(s) 1361-1364, ISSN 1469-221X
DOI: 10.15252/embr.201642783

The Basal Ganglia Over 500 Million Years

Author(s): Sten Grillner, Brita Robertson
Published in: Current Biology, Issue 26/20, 2016, Page(s) R1088-R1100, ISSN 0960-9822
DOI: 10.1016/j.cub.2016.06.041

Consciousness and cortical responsiveness: a within-state study during non-rapid eye movement sleep

Author(s): Jaakko O. Nieminen, Olivia Gosseries, Marcello Massimini, Elyana Saad, Andrew D. Sheldon, Melanie Boly, Francesca Siclari, Bradley R. Postle, Giulio Tononi
Published in: Scientific Reports, Issue 6/1, 2016, ISSN 2045-2322
DOI: 10.1038/srep30932

A General Procedure to Study Subcellular Models of Transsynaptic Signaling at Inhibitory Synapses

Author(s): Carmen A. Lupascu, Annunziato Morabito, Elisabetta Merenda, Silvia Marinelli, Cristina Marchetti, Rosanna Migliore, Enrico Cherubini, Michele Migliore
Published in: Frontiers in Neuroinformatics, Issue 10, 2016, ISSN 1662-5196
DOI: 10.3389/fninf.2016.00023

Serial grouping of 2D-image regions with object-based attention in humans

Author(s): Danique Jeurissen, Matthew W Self, Pieter R Roelfsema
Published in: eLife, Issue 5, 2016, ISSN 2050-084X
DOI: 10.7554/eLife.14320

Stratification of unresponsive patients by an independently validated index of brain complexity

Author(s): Silvia Casarotto, Angela Comanducci, Mario Rosanova, Simone Sarasso, Matteo Fecchio, Martino Napolitani, Andrea Pigorini, Adenauer G. Casali, Pietro D. Trimarchi, Melanie Boly, Olivia Gosseries, Olivier Bodart, Francesco Curto, Cristina Landi, Maurizio Mariotti, Guya Devalle, Steven Laureys, Giulio Tononi, Marcello Massimini
Published in: Annals of Neurology, Issue 80/5, 2016, Page(s) 718-729, ISSN 0364-5134
DOI: 10.1002/ana.24779

Synapse-Centric Mapping of Cortical Models to the SpiNNaker Neuromorphic Architecture

Author(s): James C. Knight, Steve B. Furber
Published in: Frontiers in Neuroscience, Issue 10, 2016, ISSN 1662-453X
DOI: 10.3389/fnins.2016.00420

Neurotechnological assessment of consciousness disorders: five ethical imperatives

Author(s): Evers K
Published in: Dialogues in Clinical Neuroscience, 2016, Page(s) 155-162, ISSN 1958-5969

Supervised Learning in Spiking Neural Networks for Precise Temporal Encoding

Author(s): Brian Gardner, André Grüning
Published in: PLOS ONE, Issue 11/8, 2016, Page(s) e0161335, ISSN 1932-6203
DOI: 10.1371/journal.pone.0161335

From Neuron Biophysics to Orientation Selectivity in Electrically Coupled Networks of Neocortical L2/3 Large Basket Cells

Author(s): Oren Amsalem, Werner Van Geit, Eilif Muller, Henry Markram, Idan Segev
Published in: Cerebral Cortex, Issue 26/8, 2016, Page(s) 3655-3668, ISSN 1047-3211
DOI: 10.1093/cercor/bhw166

The Human Brain Project: Parallel technologies for biologically accurate simulation of Granule cells

Author(s): Giordana Florimbi, Emanuele Torti, Stefano Masoli, Egidio D'Angelo, Giovanni Danese, Francesco Leporati
Published in: Microprocessors and Microsystems, Issue 47, 2016, Page(s) 303-313, ISSN 0141-9331
DOI: 10.1016/j.micpro.2016.05.015

The Effects of Realistic Synaptic Distribution and 3D Geometry on Signal Integration and Extracellular Field Generation of Hippocampal Pyramidal Cells and Inhibitory Neurons

Author(s): Attila I. Gulyás, Tamás F. Freund, Szabolcs Káli
Published in: Frontiers in Neural Circuits, Issue 10, 2016, ISSN 1662-5110
DOI: 10.3389/fncir.2016.00088

Modeling the Cerebellar Microcircuit: New Strategies for a Long-Standing Issue

Author(s): Egidio D’Angelo, Alberto Antonietti, Stefano Casali, Claudia Casellato, Jesus A. Garrido, Niceto Rafael Luque, Lisa Mapelli, Stefano Masoli, Alessandra Pedrocchi, Francesca Prestori, Martina Francesca Rizza, Eduardo Ros
Published in: Frontiers in Cellular Neuroscience, Issue 10, 2016, ISSN 1662-5102
DOI: 10.3389/fncel.2016.00176

Functional Relevance of Different Basal Ganglia Pathways Investigated in a Spiking Model with Reward Dependent Plasticity

Author(s): Pierre Berthet, Mikael Lindahl, Philip J. Tully, Jeanette Hellgren-Kotaleski, Anders Lansner
Published in: Frontiers in Neural Circuits, Issue 10, 2016, ISSN 1662-5110
DOI: 10.3389/fncir.2016.00053

The Number of Genomic Copies at the 16p11.2 Locus Modulates Language, Verbal Memory, and Inhibition

Author(s): Loyse Hippolyte, Anne M. Maillard, Borja Rodriguez-Herreros, Aurélie Pain, Sandra Martin-Brevet, Carina Ferrari, Philippe Conus, Aurélien Macé, Nouchine Hadjikhani, Andres Metspalu, Anu Reigo, Anneli Kolk, Katrin Männik, Mandy Barker, Bertrand Isidor, Cédric Le Caignec, Cyril Mignot, Laurence Schneider, Laurent Mottron, Boris Keren, Albert David, Martine Doco-Fenzy, Marion Gérard, Raphael Be
Published in: Biological Psychiatry, Issue 80/2, 2016, Page(s) 129-139, ISSN 0006-3223
DOI: 10.1016/j.biopsych.2015.10.021

Neurobiological origin of spurious brain morphological changes: A quantitative MRI study

Author(s): Sara Lorio, Ferath Kherif, Anne Ruef, Lester Melie-Garcia, Richard Frackowiak, John Ashburner, Gunther Helms, Antoine Lutti, Bodgan Draganski
Published in: Human Brain Mapping, Issue 37/5, 2016, Page(s) 1801-1815, ISSN 1065-9471
DOI: 10.1002/hbm.23137

The contribution of neuroethics to international brain research initiatives

Author(s): Kathinka Evers
Published in: Nature Reviews Neuroscience, Issue 18/1, 2016, Page(s) 1-2, ISSN 1471-003X
DOI: 10.1038/nrn.2016.143

The pretectal connectome in lamprey

Author(s): Lorenza Capantini, Arndt von Twickel, Brita Robertson, Sten Grillner
Published in: Journal of Comparative Neurology, Issue 525/4, 2017, Page(s) 753-772, ISSN 0021-9967
DOI: 10.1002/cne.24102

Data Publications Correlate with Citation Impact

Author(s): Florian Leitner, Concha Bielza, Sean L. Hill, Pedro Larrañaga
Published in: Frontiers in Neuroscience, Issue 10, 2016, ISSN 1662-453X
DOI: 10.3389/fnins.2016.00419

Early Visual Cortex as a Multiscale Cognitive Blackboard

Author(s): Pieter R. Roelfsema, Floris P. de Lange
Published in: Annual Review of Vision Science, Issue 2/1, 2016, Page(s) 131-151, ISSN 2374-4642
DOI: 10.1146/annurev-vision-111815-114443

Effect of Heterogeneity on Decorrelation Mechanisms in Spiking Neural Networks: A Neuromorphic-Hardware Study

Author(s): Thomas Pfeil, Jakob Jordan, Tom Tetzlaff, Andreas Grübl, Johannes Schemmel, Markus Diesmann, Karlheinz Meier
Published in: Physical Review X, Issue 6/2, 2016, ISSN 2160-3308
DOI: 10.1103/PhysRevX.6.021023

Microstructural proliferation in human cortex is coupled with the development of face processing

Author(s): Jesse Gomez, Michael A. Barnett, Vaidehi Natu, Aviv Mezer, Nicola Palomero-Gallagher, Kevin S. Weiner, Katrin Amunts, Karl Zilles, Kalanit Grill-Spector
Published in: Science, Issue 355/6320, 2017, Page(s) 68-71, ISSN 0036-8075
DOI: 10.1126/science.aag0311

Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue

Author(s): Geir Halnes, Tuomo Mäki-Marttunen, Daniel Keller, Klas H. Pettersen, Ole A. Andreassen, Gaute T. Einevoll
Published in: PLOS Computational Biology, Issue 12/11, 2016, Page(s) e1005193, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1005193

Best practices in data analysis and sharing in neuroimaging using MRI

Author(s): Thomas E Nichols, Samir Das, Simon B Eickhoff, Alan C Evans, Tristan Glatard, Michael Hanke, Nikolaus Kriegeskorte, Michael P Milham, Russell A Poldrack, Jean-Baptiste Poline, Erika Proal, Bertrand Thirion, David C Van Essen, Tonya White, B T Thomas Yeo
Published in: Nature Neuroscience, Issue 20/3, 2017, Page(s) 299-303, ISSN 1097-6256
DOI: 10.1038/nn.4500

The neural basis of sex differences in sexual behavior: A quantitative meta-analysis

Author(s): Timm B. Poeppl, Berthold Langguth, Rainer Rupprecht, Adam Safron, Danilo Bzdok, Angela R. Laird, Simon B. Eickhoff
Published in: Frontiers in Neuroendocrinology, Issue 43, 2016, Page(s) 28-43, ISSN 0091-3022
DOI: 10.1016/j.yfrne.2016.10.001

The Human Brain Project: Creating a European Research Infrastructure to Decode the Human Brain

Author(s): Katrin Amunts, Christoph Ebell, Jeff Muller, Martin Telefont, Alois Knoll, Thomas Lippert
Published in: Neuron, Issue 92/3, 2016, Page(s) 574-581, ISSN 0896-6273
DOI: 10.1016/j.neuron.2016.10.046

Active cortical dendrites modulate perception

Author(s): Naoya Takahashi, Thomas G. Oertner, Peter Hegemann, Matthew E. Larkum
Published in: Science, Issue 354/6319, 2016, Page(s) 1587-1590, ISSN 0036-8075
DOI: 10.1126/science.aah6066

Topographic organization of the cerebral cortex and brain cartography

Author(s): Simon B. Eickhoff, R. Todd Constable, B.T. Thomas Yeo
Published in: NeuroImage, 2017, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2017.02.018

Multimodal evaluation of the amygdala's functional connectivity

Author(s): Rebecca Kerestes, Henry W. Chase, Mary L. Phillips, Cecile D. Ladouceur, Simon B. Eickhoff
Published in: NeuroImage, Issue 148, 2017, Page(s) 219-229, ISSN 1053-8119
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Understanding the brain through large, multidisciplinary research initiatives

Author(s): Gianluca Quaglio, Maurizio Corbetta, Theodoros Karapiperis, Katrin Amunts, Walter Koroshetz, Tetsuo Yamamori, Ruxandra Draghia-Akli
Published in: The Lancet Neurology, Issue 16/3, 2017, Page(s) 183-184, ISSN 1474-4422
DOI: 10.1016/S1474-4422(17)30020-0

The heterogeneity of the left dorsal premotor cortex evidenced by multimodal connectivity-based parcellation and functional characterization

Author(s): Sarah Genon, Andrew Reid, Hai Li, Lingzhong Fan, Veronika I. Müller, Edna C. Cieslik, Felix Hoffstaedter, Robert Langner, Christian Grefkes, Angela R. Laird, Peter T. Fox, Tianzi Jiang, Katrin Amunts, Simon B. Eickhoff
Published in: NeuroImage, 2017, ISSN 1053-8119
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Altered Brain Activity in Unipolar Depression Revisited

Author(s): Veronika I. Müller, Edna C. Cieslik, Ilinca Serbanescu, Angela R. Laird, Peter T. Fox, Simon B. Eickhoff
Published in: JAMA Psychiatry, Issue 74/1, 2017, Page(s) 47, ISSN 2168-622X
DOI: 10.1001/jamapsychiatry.2016.2783

Evidence for three genetic loci involved in both anorexia nervosa risk and variation of body mass index

Author(s): A Hinney, M Kesselmeier, S Jall, A-L Volckmar, M Föcker, J Antel, Vesna Boraska Perica, Christopher S Franklin, James A B Floyd, Laura M Thornton, Laura M Huckins, Lorraine Southam, N William Rayner, Ioanna Tachmazidou, Kelly L Klump, Janet Treasure, Cathryn M Lewis, Ulrike Schmidt, Federica Tozzi, Kirsty iezebrink, Johannes Hebebrand, Philip Gorwood, Roger A H Adan, Martien J H Kas, Angela Favar
Published in: Molecular Psychiatry, Issue 22/2, 2016, Page(s) 192-201, ISSN 1359-4184
DOI: 10.1038/mp.2016.71

Identification of rare variants in KCTD13 at the schizophrenia risk locus 16p11.2

Author(s): Franziska Degenhardt, Barbara Heinemann, Jana Strohmaier, Marvin A. Pfohl, Ina Giegling, Andrea Hofmann, Kerstin U. Ludwig, Stephanie H. Witt, Michael Ludwig, Andreas J. Forstner, Margot Albus, Sibylle G. Schwab, Margitta Borrmann-Hassenbach, Leonard Lennertz, Michael Wagner, Per Hoffmann, Dan Rujescu, Wolfgang Maier, Sven Cichon, Marcella Rietschel, Markus M. Nöthen
Published in: Psychiatric Genetics, Issue 26/6, 2016, Page(s) 293-296, ISSN 0955-8829
DOI: 10.1097/YPG.0000000000000145

Self-Grounded Vision: Hand Ownership Modulates Visual Location through Cortical β and γ Oscillations

Author(s): Nathan Faivre, Jonathan Dönz, Michele Scandola, Herberto Dhanis, Javier Bello Ruiz, Fosco Bernasconi, Roy Salomon, Olaf Blanke
Published in: The Journal of Neuroscience, Issue 37/1, 2017, Page(s) 11-22, ISSN 0270-6474
DOI: 10.1523/JNEUROSCI.0563-16.2017

Fundamental Activity Constraints Lead to Specific Interpretations of the Connectome

Author(s): Jannis Schuecker, Maximilian Schmidt, Sacha J. van Albada, Markus Diesmann, Moritz Helias
Published in: PLOS Computational Biology, Issue 13/2, 2017, Page(s) e1005179, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1005179

Reproducibility of superficial white matter tracts using diffusion-weighted imaging tractography

Author(s): Miguel Guevara, Claudio Román, Josselin Houenou, Delphine Duclap, Cyril Poupon, Jean François Mangin, Pamela Guevara
Published in: NeuroImage, Issue 147, 2017, Page(s) 703-725, ISSN 1053-8119
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Influence of age and cognitive performance on resting-state brain networks of older adults in a population-based cohort

Author(s): Christiane Jockwitz, Svenja Caspers, Silke Lux, Simon B. Eickhoff, Kerstin Jütten, Stefan Lenzen, Susanne Moebus, Noreen Pundt, Andrew Reid, Felix Hoffstaedter, Karl-Heinz Jöckel, Raimund Erbel, Sven Cichon, Markus M. Nöthen, N. Jon Shah, Karl Zilles, Katrin Amunts
Published in: Cortex, Issue 89, 2017, Page(s) 28-44, ISSN 0010-9452
DOI: 10.1016/j.cortex.2017.01.008

Self-induced intracerebral gamma oscillations in the human cortex

Author(s): Juliana Corlier, Daphné Rimsky-Robert, Mario Valderrama, Katia Lehongre, Claude Adam, Stéphane Clémenceau, Stéphane Charpier, Julien Bastin, Philippe Kahane, Jean-Philippe Lachaux, Vincent Navarro, Michel Le Van Quyen
Published in: Brain, Issue 139/12, 2016, Page(s) 3084-3091, ISSN 0006-8950
DOI: 10.1093/brain/aww246

The Cytoarchitecture of Domain-specific Regions in Human High-level Visual Cortex

Author(s): Kevin S. Weiner, Michael A. Barnett, Simon Lorenz, Julian Caspers, Anthony Stigliani, Katrin Amunts, Karl Zilles, Bruce Fischl, Kalanit Grill-Spector
Published in: Cerebral Cortex, Issue 27/1, 2016, Page(s) 146-161, ISSN 1047-3211
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Exome chip analyses in adult attention deficit hyperactivity disorder

Author(s): T Zayats, K K Jacobsen, R Kleppe, C P Jacob, S Kittel-Schneider, M Ribasés, J A Ramos-Quiroga, V Richarte, M Casas, N R Mota, E H Grevet, M Klein, J Corominas, J Bralten, T Galesloot, A A Vasquez, S Herms, A J Forstner, H Larsson, G Breen, P Asherson, S Gross-Lesch, K P Lesch, S Cichon, M B Gabrielsen, O L Holmen, C H D Bau, J Buitelaar, L Kiemeney, S V Faraone, B Cormand, B Franke, A Reif, J Haa
Published in: Translational Psychiatry, Issue 6/10, 2016, Page(s) e923, ISSN 2158-3188
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Semi-supervised classification trees

Author(s): Jurica Levatić, Michelangelo Ceci, Dragi Kocev, Sašo Džeroski
Published in: Journal of Intelligent Information Systems, 2017, ISSN 0925-9902
DOI: 10.1007/s10844-017-0457-4

Large-scale neuromorphic computing systems

Author(s): Steve Furber
Published in: Journal of Neural Engineering, Issue 13/5, 2016, Page(s) 051001, ISSN 1741-2560
DOI: 10.1088/1741-2560/13/5/051001

Multi-label classification via multi-target regression on data streams

Author(s): Aljaž Osojnik, Panče Panov, Sašo Džeroski
Published in: Machine Learning, Issue 106/6, 2017, Page(s) 745-770, ISSN 0885-6125
DOI: 10.1007/s10994-016-5613-5

Yeasts and yeast-like fungi in tap water and groundwater, and their transmission to household appliances

Author(s): Monika Novak Babič, Polona Zalar, Bernard Ženko, Sašo Džeroski, Nina Gunde-Cimerman
Published in: Fungal Ecology, Issue 20, 2016, Page(s) 30-39, ISSN 1754-5048
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Refinement and selection heuristics in subgroup discovery and classification rule learning

Author(s): Anita Valmarska, Nada Lavrač, Johannes Fürnkranz, Marko Robnik-Šikonja
Published in: Expert Systems with Applications, Issue 81, 2017, Page(s) 147-162, ISSN 0957-4174
DOI: 10.1016/j.eswa.2017.03.041

Designing Workflows for the Reproducible Analysis of Electrophysiological Data

Author(s): Michael Denker, Sonja Grün
Published in: BrainComp 2015: Brain-Inspired Computing, 2016, Page(s) 58-72
DOI: 10.1007/978-3-319-50862-7_5

ClowdFlows: Online workflows for distributed big data mining

Author(s): Janez Kranjc, Roman Orač, Vid Podpečan, Nada Lavrač, Marko Robnik-Šikonja
Published in: Future Generation Computer Systems, Issue 68, 2017, Page(s) 38-58, ISSN 0167-739X
DOI: 10.1016/j.future.2016.07.018

HINMINE: heterogeneous information network mining with information retrieval heuristics

Author(s): Jan Kralj, Marko Robnik-Šikonja, Nada Lavrač
Published in: Journal of Intelligent Information Systems, 2017, ISSN 0925-9902
DOI: 10.1007/s10844-017-0444-9

Selective TMS-induced modulation of functional connectivity correlates with changes in behavior

Author(s): Puiu F. Balan, Annelies Gerits, Dante Mantini, Wim Vanduffel
Published in: NeuroImage, Issue 149, 2017, Page(s) 361-378, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2017.01.076

Modeling dynamical systems with data stream mining

Author(s): Aljaz Osojnik, Pance Panov, Saso Dzeroski
Published in: Computer Science and Information Systems, Issue 13/2, 2016, Page(s) 453-473, ISSN 1820-0214
DOI: 10.2298/CSIS150518009O

Neurorobotics: A strategic pillar of the Human Brain Project

Author(s): Alois Knoll and Marc-Oliver Gewaltig
Published in: Brain-inspired intelligent robotics: The intersection of robotics and neuroscience, 2016

25th Annual Computational Neuroscience Meeting: CNS-2016

Author(s): Tatyana O. Sharpee, Alain Destexhe, Mitsuo Kawato, Vladislav Sekulić, Frances K. Skinner, Daniel K. Wójcik, Chaitanya Chintaluri, Dorottya Cserpán, Zoltán Somogyvári, Jae Kyoung Kim, Zachary P. Kilpatrick, Matthew R. Bennett, Kresimir Josić, Irene Elices, David Arroyo, Rafael Levi, Francisco B. Rodriguez, Pablo Varona, Eunjin Hwang, Bowon Kim, Hio-Been Han, Tae Kim, James T. McKenna, Ritchie
Published in: BMC Neuroscience, Issue 17/S1, 2016, ISSN 1471-2202
DOI: 10.1186/s12868-016-0283-6

Closed Loop Interactions between Spiking Neural Network and Robotic Simulators Based on MUSIC and ROS

Author(s): Philipp Weidel, Mikael Djurfeldt, Renato C. Duarte, Abigail Morrison
Published in: Frontiers in Neuroinformatics, Issue 10, 2016, ISSN 1662-5196
DOI: 10.3389/fninf.2016.00031

Ontology Engineering: From an Art to a Craft

Author(s): Larisa Soldatova, Panče Panov, Sašo Džeroski
Published in: OWLED 2015: Ontology Engineering, 2016, Page(s) 174-181
DOI: 10.1007/978-3-319-33245-1_18

Decoding Grasping Movements from the Parieto-Frontal Reaching Circuit in the Nonhuman Primate

Author(s): Koen Nelissen, Prosper Agbesi Fiave, Wim Vanduffel
Published in: Cerebral Cortex, 2017, Page(s) 1-15, ISSN 1047-3211
DOI: 10.1093/cercor/bhx037

Learning Ensembles of Process-Based Models by Bagging of Random Library Samples

Author(s): Nikola Simidjievski, Ljupčo Todorovski, Sašo Džeroski
Published in: DS 2016: Discovery Science, 2016, Page(s) 245-260
DOI: 10.1007/978-3-319-46307-0_16

Demonstrating Hybrid Learning in a Flexible Neuromorphic Hardware System

Author(s): Simon Friedmann, Johannes Schemmel, Andreas Grubl, Andreas Hartel, Matthias Hock, Karlheinz Meier
Published in: IEEE Transactions on Biomedical Circuits and Systems, Issue 11/1, 2017, Page(s) 128-142, ISSN 1932-4545
DOI: 10.1109/TBCAS.2016.2579164

Homogeneous clusters of Alzheimer’s disease patient population

Author(s): Dragan Gamberger, Bernard Ženko, Alexis Mitelpunkt, Nada Lavrač
Published in: BioMedical Engineering OnLine, Issue 15/S1, 2016, ISSN 1475-925X
DOI: 10.1186/s12938-016-0183-0

Energy-efficient neural network chips approach human recognition capabilities

Author(s): Wolfgang Maass
Published in: Proceedings of the National Academy of Sciences, Issue 113/41, 2016, Page(s) 11387-11389, ISSN 0027-8424
DOI: 10.1073/pnas.1614109113

Comparison of Tree-Based Methods for Multi-target Regression on Data Streams

Author(s): Aljaž Osojnik, Panče Panov, Sašo Džeroski
Published in: NFMCP 2015: New Frontiers in Mining Complex Patterns, 2016, Page(s) 17-31
DOI: 10.1007/978-3-319-39315-5_2

Effective Connectivity Reveals Largely Independent Parallel Networks of Face and Body Patches

Author(s): Elsie Premereur, Jessica Taubert, Peter Janssen, Rufin Vogels, Wim Vanduffel
Published in: Current Biology, Issue 26/24, 2016, Page(s) 3269-3279, ISSN 0960-9822
DOI: 10.1016/j.cub.2016.09.059

Option Predictive Clustering Trees for Multi-target Regression

Author(s): Aljaž Osojnik, Sašo Džeroski, Dragi Kocev
Published in: DS 2016: Discovery Science, 2016, Page(s) 118-133
DOI: 10.1007/978-3-319-46307-0_8

Fast Predictive Handshaking in Synchronous FPGAs for Fully Asynchronous Multisymbol Chip Links: Application to SpiNNaker 2-of-7 Links

Author(s): Amirreza Yousefzadeh, Luis A. Plana, Steve Temple, Teresa Serrano-Gotarredona, Steve B. Furber, Bernabe Linares-Barranco
Published in: IEEE Transactions on Circuits and Systems II: Express Briefs, Issue 63/8, 2016, Page(s) 763-767, ISSN 1549-7747
DOI: 10.1109/TCSII.2016.2531092

Microprocessors: the engines of the digital age

Author(s): Steve Furber
Published in: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science, Issue 473/2199, 2017, Page(s) 20160893, ISSN 1364-5021
DOI: 10.1098/rspa.2016.0893

Process-based design of dynamical biological systems

Author(s): Jovan Tanevski, Ljupčo Todorovski, Sašo Džeroski
Published in: Scientific Reports, Issue 6/1, 2016, ISSN 2045-2322
DOI: 10.1038/srep34107

Effects of Calcium Spikes in the Layer 5 Pyramidal Neuron on Coincidence Detection and Activity Propagation

Author(s): Yansong Chua, Abigail Morrison
Published in: Frontiers in Computational Neuroscience, Issue 10, 2016, ISSN 1662-5188
DOI: 10.3389/fncom.2016.00076

Functional complexity emerging from anatomical constraints in the brain: the significance of network modularity and rich-clubs

Author(s): Gorka Zamora-López, Yuhan Chen, Gustavo Deco, Morten L. Kringelbach, Changsong Zhou
Published in: Scientific Reports, Issue 6/1, 2016, ISSN 2045-2322
DOI: 10.1038/srep38424

Connecting Artificial Brains to Robots in a Comprehensive Simulation Framework: The Neurorobotics Platform

Author(s): Egidio Falotico, Lorenzo Vannucci, Alessandro Ambrosano, Ugo Albanese, Stefan Ulbrich, Juan Camilo Vasquez Tieck, Georg Hinkel, Jacques Kaiser, Igor Peric, Oliver Denninger, Nino Cauli, Murat Kirtay, Arne Roennau, Gudrun Klinker, Axel Von Arnim, Luc Guyot, Daniel Peppicelli, Pablo Martínez-Cañada, Eduardo Ros, Patrick Maier, Sandro Weber, Manuel Huber, David Plecher, Florian Röhrbein, Stefan De
Published in: Frontiers in Neurorobotics, Issue 11, 2017, ISSN 1662-5218
DOI: 10.3389/fnbot.2017.00002

Climbing Brain Levels of Organisation from Genes to Consciousness

Author(s): Jean-Pierre Changeux
Published in: Trends in Cognitive Sciences, Issue 21/3, 2017, Page(s) 168-181, ISSN 1364-6613
DOI: 10.1016/j.tics.2017.01.004

Musculoskeletal Robots: Scalability in Neural Control

Author(s): Christoph Richter, Soren Jentzsch, Rafael Hostettler, Jesus A. Garrido, Eduardo Ros, Alois Knoll, Florian Rohrbein, Patrick van der Smagt, Jorg Conradt
Published in: IEEE Robotics & Automation Magazine, Issue 23/4, 2016, Page(s) 128-137, ISSN 1070-9932
DOI: 10.1109/MRA.2016.2535081

A Comparison of Different Data Transformation Approaches in the Feature Ranking Context

Author(s): Matej Petković, Panče Panov, Sašo Džeroski
Published in: DS 2016: Discovery Science, 2016, Page(s) 310-324
DOI: 10.1007/978-3-319-46307-0_20

Self-training for multi-target regression with tree ensembles

Author(s): Jurica Levatić, Michelangelo Ceci, Dragi Kocev, Sašo Džeroski
Published in: Knowledge-Based Systems, Issue 123, 2017, Page(s) 41-60, ISSN 0950-7051
DOI: 10.1016/j.knosys.2017.02.014

Speed hysteresis and noise shaping of traveling fronts in neural fields: role of local circuitry and nonlocal connectivity

Author(s): Cristiano Capone, Maurizio Mattia
Published in: Scientific Reports, Issue 7, 2017, Page(s) 39611, ISSN 2045-2322
DOI: 10.1038/srep39611

Measures of metabolism and complexity in the brain of patients with disorders of consciousness

Author(s): Olivier Bodart, Olivia Gosseries, Sarah Wannez, Aurore Thibaut, Jitka Annen, Melanie Boly, Mario Rosanova, Adenauer G. Casali, Silvia Casarotto, Giulio Tononi, Marcello Massimini, Steven Laureys
Published in: NeuroImage: Clinical, Issue 14, 2017, Page(s) 354-362, ISSN 2213-1582
DOI: 10.1016/j.nicl.2017.02.002

Impedance Spectrum in Cortical Tissue: Implications for Propagation of LFP Signals on the Microscopic Level

Author(s): Stéphanie Miceli, Torbjørn V. Ness, Gaute T. Einevoll, Dirk Schubert
Published in: eneuro, Issue 4/1, 2017, Page(s) ENEURO.0291-16.2016, ISSN 2373-2822
DOI: 10.1523/ENEURO.0291-16.2016

Untangling Basal Ganglia Network Dynamics and Function: Role of Dopamine Depletion and Inhibition Investigated in a Spiking Network Model

Author(s): Mikael Lindahl, Jeanette Hellgren Kotaleski
Published in: eneuro, Issue 3/6, 2016, Page(s) ENEURO.0156-16.2016, ISSN 2373-2822
DOI: 10.1523/ENEURO.0156-16.2016

Living well in the Neuropolis

Author(s): Des Fitzgerald, Nikolas Rose, Ilina Singh
Published in: The Sociological Review Monographs, Issue 64/1, 2016, Page(s) 221-237, ISSN 0081-1769
DOI: 10.1002/2059-7932.12022

Local recording of biological magnetic fields using Giant Magneto Resistance-based micro-probes

Author(s): Francesca Barbieri, Vincent Trauchessec, Laure Caruso, Josué Trejo-Rosillo, Bartosz Telenczuk, Elodie Paul, Thierry Bal, Alain Destexhe, Claude Fermon, Myriam Pannetier-Lecoeur, Gilles Ouanounou
Published in: Scientific Reports, Issue 6/1, 2016, ISSN 2045-2322
DOI: 10.1038/srep39330

Individual brain structure and modelling predict seizure propagation

Author(s): Timothée Proix, Fabrice Bartolomei, Maxime Guye, Viktor K. Jirsa
Published in: Brain, Issue 140/3, 2017, Page(s) 641-654, ISSN 0006-8950
DOI: 10.1093/brain/awx004

Local field potentials primarily reflect inhibitory neuron activity in human and monkey cortex

Author(s): Bartosz Teleńczuk, Nima Dehghani, Michel Le Van Quyen, Sydney S. Cash, Eric Halgren, Nicholas G. Hatsopoulos, Alain Destexhe
Published in: Scientific Reports, Issue 7, 2017, Page(s) 40211, ISSN 2045-2322
DOI: 10.1038/srep40211

Recent progress in multi-electrode spike sorting methods

Author(s): Baptiste Lefebvre, Pierre Yger, Olivier Marre
Published in: Journal of Physiology-Paris, 2017, ISSN 0928-4257
DOI: 10.1016/j.jphysparis.2017.02.005

Reaction-diffusion-like formalism for plastic neural networks reveals dissipative solitons at criticality

Author(s): Dmytro Grytskyy, Markus Diesmann, Moritz Helias
Published in: Physical Review E, Issue 93/6, 2016, ISSN 2470-0045
DOI: 10.1103/PhysRevE.93.062303

Tracking Dynamic Interactions Between Structural and Functional Connectivity: A TMS/EEG-dMRI Study

Author(s): Enrico Amico, Olivier Bodart, Mario Rosanova, Olivia Gosseries, Lizette Heine, Pieter Van Mierlo, Charlotte Martial, Marcello Massimini, Daniele Marinazzo, Steven Laureys
Published in: Brain Connectivity, Issue 7/2, 2017, Page(s) 84-97, ISSN 2158-0014
DOI: 10.1089/brain.2016.0462

Neurorobotics

Author(s): A. Knoll, F. Röhrbein, A. Kuhn, M. Akl, K. Sharma
Published in: Informatik-Spektrum, Issue 40/2, 2017, Page(s) 161-164, ISSN 0170-6012
DOI: 10.1007/s00287-017-1031-8

Hopf bifurcation in a nonlocal nonlinear transport equation stemming from stochastic neural dynamics

Author(s): Audric Drogoul, Romain Veltz
Published in: Chaos: An Interdisciplinary Journal of Nonlinear Science, Issue 27/2, 2017, Page(s) 021101, ISSN 1054-1500
DOI: 10.1063/1.4976510

Function-structure connectivity in patients with severe brain injury as measured by MRI-DWI and FDG-PET

Author(s): J. Annen, L. Heine, E. Ziegler, G. Frasso, M. Bahri, C. Di Perri, J. Stender, C. Martial, S. Wannez, K. D'ostilio, E. Amico, G. Antonopoulos, C. Bernard, F. Tshibanda, R. Hustinx, S. Laureys
Published in: Human Brain Mapping, Issue 37/11, 2016, Page(s) 3707-3720, ISSN 1065-9471
DOI: 10.1002/hbm.23269

Multiple Choice Neurodynamical Model of the Uncertain Option Task

Author(s): Andrea Insabato, Mario Pannunzi, Gustavo Deco
Published in: PLOS Computational Biology, Issue 13/1, 2017, Page(s) e1005250, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1005250

Power-law statistics and universal scaling in the absence of criticality

Author(s): Jonathan Touboul, Alain Destexhe
Published in: Physical Review E, Issue 95/1, 2017, ISSN 2470-0045
DOI: 10.1103/PhysRevE.95.012413

Synaptic Correlates of Working Memory Capacity

Author(s): Yuanyuan Mi, Mikhail Katkov, Misha Tsodyks
Published in: Neuron, Issue 93/2, 2017, Page(s) 323-330, ISSN 0896-6273
DOI: 10.1016/j.neuron.2016.12.004

Environmental factors linked to depression vulnerability are associated with altered cerebellar resting-state synchronization

Author(s): Aldo Córdova-Palomera, Cristian Tornador, Carles Falcón, Nuria Bargalló, Paolo Brambilla, Benedicto Crespo-Facorro, Gustavo Deco, Lourdes Fañanás
Published in: Scientific Reports, Issue 6/1, 2016, ISSN 2045-2322
DOI: 10.1038/srep37384

Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability

Author(s): Tiina Manninen, Riikka Havela, Marja-Leena Linne
Published in: Frontiers in Neuroinformatics, Issue 11, 2017, ISSN 1662-5196
DOI: 10.3389/fninf.2017.00011

Hebbian plasticity requires compensatory processes on multiple timescales

Author(s): Friedemann Zenke, Wulfram Gerstner
Published in: Philosophical Transactions of the Royal Society B: Biological Sciences, Issue 372/1715, 2017, Page(s) 20160259, ISSN 0962-8436
DOI: 10.1098/rstb.2016.0259

Hebbian Spike-Timing Dependent Plasticity at the Cerebellar Input Stage

Author(s): Martina Sgritta, Francesca Locatelli, Teresa Soda, Francesca Prestori, Egidio Ugo D'Angelo
Published in: The Journal of Neuroscience, Issue 37/11, 2017, Page(s) 2809-2823, ISSN 0270-6474
DOI: 10.1523/JNEUROSCI.2079-16.2016

Data-driven identification of prognostic tumor subpopulations using spatially mapped t-SNE of mass spectrometry imaging data

Author(s): Walid M. Abdelmoula, Benjamin Balluff, Sonja Englert, Jouke Dijkstra, Marcel J. T. Reinders, Axel Walch, Liam A. McDonnell, Boudewijn P. F. Lelieveldt
Published in: Proceedings of the National Academy of Sciences, Issue 113/43, 2016, Page(s) 12244-12249, ISSN 0027-8424
DOI: 10.1073/pnas.1510227113

Controlled clinical trial of repeated prefrontal tDCS in patients with chronic minimally conscious state

Author(s): Aurore Thibaut, Sarah Wannez, Anne-Francoise Donneau, Camille Chatelle, Olivia Gosseries, Marie-Aurélie Bruno, Steven Laureys
Published in: Brain Injury, Issue 31/4, 2017, Page(s) 466-474, ISSN 0269-9052
DOI: 10.1080/02699052.2016.1274776

Single Neuron Optimization as a Basis for Accurate Biophysical Modeling: The Case of Cerebellar Granule Cells

Author(s): Stefano Masoli, Martina F. Rizza, Martina Sgritta, Werner Van Geit, Felix Schürmann, Egidio D'Angelo
Published in: Frontiers in Cellular Neuroscience, Issue 11, 2017, ISSN 1662-5102
DOI: 10.3389/fncel.2017.00071

Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets

Author(s): Vincent van Unen, Na Li, Ilse Molendijk, Mine Temurhan, Thomas Höllt, Andrea E. van der Meulen-de Jong, Hein W. Verspaget, M. Luisa Mearin, Chris J. Mulder, Jeroen van Bergen, Boudewijn P.F. Lelieveldt, Frits Koning
Published in: Immunity, Issue 44/5, 2016, Page(s) 1227-1239, ISSN 1074-7613
DOI: 10.1016/j.immuni.2016.04.014

A Multiple-Plasticity Spiking Neural Network Embedded in a Closed-Loop Control System to Model Cerebellar Pathologies

Author(s): Alice Geminiani, Claudia Casellato, Alberto Antonietti, Egidio D’Angelo, Alessandra Pedrocchi
Published in: International Journal of Neural Systems, 2017, Page(s) 1750017, ISSN 0129-0657
DOI: 10.1142/S0129065717500174

Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion

Author(s): Inge A. Mulder, Artem Khmelinskii, Oleh Dzyubachyk, Sebastiaan de Jong, Nathalie Rieff, Marieke J. H. Wermer, Mathias Hoehn, Boudewijn P. F. Lelieveldt, Arn M. J. M. van den Maagdenberg
Published in: Frontiers in Neuroinformatics, Issue 11, 2017, ISSN 1662-5196
DOI: 10.3389/fninf.2017.00003

Reducing GABAA-mediated inhibition improves forelimb motor function after focal cortical stroke in mice

Author(s): Claudia Alia, Cristina Spalletti, Stefano Lai, Alessandro Panarese, Silvestro Micera, Matteo Caleo
Published in: Scientific Reports, Issue 6/1, 2016, ISSN 2045-2322
DOI: 10.1038/srep37823

Detection of Conversion from Mild Cognitive Impairment to Alzheimer's Disease Using Longitudinal Brain MRI

Author(s): Zhuo Sun, Martijn van de Giessen, Boudewijn P. F. Lelieveldt, Marius Staring
Published in: Frontiers in Neuroinformatics, Issue 11, 2017, ISSN 1662-5196
DOI: 10.3389/fninf.2017.00016

Unbinding Kinetics of a p38 MAP Kinase Type II Inhibitor from Metadynamics Simulations

Author(s): Rodrigo Casasnovas, Vittorio Limongelli, Pratyush Tiwary, Paolo Carloni, Michele Parrinello
Published in: Journal of the American Chemical Society, Issue 139/13, 2017, Page(s) 4780-4788, ISSN 0002-7863
DOI: 10.1021/jacs.6b12950

Density-based clustering: A ‘landscape view’ of multi-channel neural data for inference and dynamic complexity analysis

Author(s): Gabriel Baglietto, Guido Gigante, Paolo Del Giudice
Published in: PLOS ONE, Issue 12/4, 2017, Page(s) e0174918, ISSN 1932-6203
DOI: 10.1371/journal.pone.0174918

Illuminating Phenylazopyridines To Photoswitch Metabotropic Glutamate Receptors: From the Flask to the Animals

Author(s): Xavier Gómez-Santacana, Silvia Pittolo, Xavier Rovira, Marc Lopez, Charleine Zussy, James A. R. Dalton, Adèle Faucherre, Chris Jopling, Jean-Philippe Pin, Francisco Ciruela, Cyril Goudet, Jesús Giraldo, Pau Gorostiza, Amadeu Llebaria
Published in: ACS Central Science, Issue 3/1, 2017, Page(s) 81-91, ISSN 2374-7943
DOI: 10.1021/acscentsci.6b00353

Random versus maximum entropy models of neural population activity

Author(s): Ulisse Ferrari, Tomoyuki Obuchi, Thierry Mora
Published in: Physical Review E, Issue 95/4, 2017, ISSN 2470-0045
DOI: 10.1103/PhysRevE.95.042321

Similarity in Neuronal Firing Regimes across Mammalian Species

Author(s): Y. Mochizuki, T. Onaga, H. Shimazaki, T. Shimokawa, Y. Tsubo, R. Kimura, A. Saiki, Y. Sakai, Y. Isomura, S. Fujisawa, K.-i. Shibata, D. Hirai, T. Furuta, T. Kaneko, S. Takahashi, T. Nakazono, S. Ishino, Y. Sakurai, T. Kitsukawa, J. W. Lee, H. Lee, M. W. Jung, C. Babul, P. E. Maldonado, K. Takahashi, F. I. Arce-McShane, C. F. Ross, B. J. Sessle, N. G. Hatsopoulos, T. Brochier, A. Riehle, P. Chorley
Published in: Journal of Neuroscience, Issue 36/21, 2016, Page(s) 5736-5747, ISSN 0270-6474
DOI: 10.1523/JNEUROSCI.0230-16.2016

Heterogeneous firing rate response of mouse layer V pyramidal neurons in the fluctuation-driven regime

Author(s): Y. Zerlaut, B. Teleńczuk, C. Deleuze, T. Bal, G. Ouanounou, A. Destexhe
Published in: The Journal of Physiology, Issue 594/13, 2016, Page(s) 3791-3808, ISSN 0022-3751
DOI: 10.1113/JP272317

Neuron-Based Control Mechanisms for a Robotic Arm and Hand

Author(s): Nishant Singh, Christian Huyck, Vaibhav Gandhi, Alexander Jones
Published in: International Journal of Computer, Electrical, Automation, Control and Information Engineering, 2017, Page(s) 175-179

Morphological Properties of Mass–Spring Networks for Optimal Locomotion Learning

Author(s): Gabriel Urbain, Jonas Degrave, Benonie Carette, Joni Dambre, Francis Wyffels
Published in: Frontiers in Neurorobotics, Issue 11, 2017, ISSN 1662-5218
DOI: 10.3389/fnbot.2017.00016

Enhanced Responsiveness and Low-Level Awareness in Stochastic Network States

Author(s): Yann Zerlaut, Alain Destexhe
Published in: Neuron, Issue 94/5, 2017, Page(s) 1002-1009, ISSN 0896-6273
DOI: 10.1016/j.neuron.2017.04.001

Connectomic Analysis of Brain Networks: Novel Techniques and Future Directions

Author(s): J. Leonie Cazemier, Francisco Clascá, Paul H. E. Tiesinga
Published in: Frontiers in Neuroanatomy, Issue 10, 2016, ISSN 1662-5129
DOI: 10.3389/fnana.2016.00110

Neuroscience of Childhood Poverty: Evidence of Impacts and Mechanisms as Vehicles of Dialog With Ethics

Author(s): Sebastián J. Lipina, Kathinka Evers
Published in: Frontiers in Psychology, Issue 8, 2017, ISSN 1664-1078
DOI: 10.3389/fpsyg.2017.00061

Wiring Economy of Pyramidal Cells in the Juvenile Rat Somatosensory Cortex

Author(s): Laura Anton-Sanchez, Concha Bielza, Pedro Larrañaga, Javier DeFelipe
Published in: PLOS ONE, Issue 11/11, 2016, Page(s) e0165915, ISSN 1932-6203
DOI: 10.1371/journal.pone.0165915

Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas

Author(s): Bowen Dempsey, Sheng Le, Anita Turner, Phil Bokiniec, Radhika Ramadas, Jan G. Bjaalie, Clement Menuet, Rachael Neve, Andrew M. Allen, Ann K. Goodchild, Simon McMullan
Published in: Frontiers in Neural Circuits, Issue 11, 2017, ISSN 1662-5110
DOI: 10.3389/fncir.2017.00009

The dynamics of resting fluctuations in the brain: metastability and its dynamical cortical core

Author(s): Gustavo Deco, Morten L. Kringelbach, Viktor K. Jirsa, Petra Ritter
Published in: Scientific Reports, Issue 7/1, 2017, ISSN 2045-2322
DOI: 10.1038/s41598-017-03073-5

Symmetry Breaking in Space-Time Hierarchies Shapes Brain Dynamics and Behavior

Author(s): Ajay S. Pillai, Viktor K. Jirsa
Published in: Neuron, Issue 94/5, 2017, Page(s) 1010-1026, ISSN 0896-6273
DOI: 10.1016/j.neuron.2017.05.013

Assessment of antibody library diversity through next generation sequencing and technical error compensation

Author(s): Marco Fantini, Luca Pandolfini, Simonetta Lisi, Michele Chirichella, Ivan Arisi, Marco Terrigno, Martina Goracci, Federico Cremisi, Antonino Cattaneo
Published in: PLOS ONE, Issue 12/5, 2017, Page(s) e0177574, ISSN 1932-6203
DOI: 10.1371/journal.pone.0177574

Memory Retrieval from First Principles

Author(s): M. Katkov, S. Romani, M. Tsodyks
Published in: Neuron, Issue 94/5, 2017, Page(s) 1027-1032, ISSN 0896-6273
DOI: 10.1016/j.neuron.2017.03.048

Grand challenges for global brain sciences

Author(s): Grillner, S.
Published in: F1000Research, Issue 5, 2016, Page(s) 2873, ISSN 2046-1402
DOI: 10.12688/f1000research.10025.1

The missing link: Predicting connectomes from noisy and partially observed tract tracing data

Author(s): Max Hinne, Annet Meijers, Rembrandt Bakker, Paul H. E. Tiesinga, Morten Mørup, Marcel A. J. van Gerven
Published in: PLOS Computational Biology, Issue 13/1, 2017, Page(s) e1005374, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1005374

Hierarchy of Information Processing in the Brain: A Novel ‘Intrinsic Ignition’ Framework

Author(s): Gustavo Deco, Morten L. Kringelbach
Published in: Neuron, Issue 94/5, 2017, Page(s) 961-968, ISSN 0896-6273
DOI: 10.1016/j.neuron.2017.03.028

Post-translational selective intracellular silencing of acetylated proteins with de novo selected intrabodies

Author(s): Michele Chirichella, Simonetta Lisi, Marco Fantini, Martina Goracci, Mariantonietta Calvello, Rossella Brandi, Ivan Arisi, Mara D'Onofrio, Cristina Di Primio, Antonino Cattaneo
Published in: Nature Methods, Issue 14/3, 2017, Page(s) 279-282, ISSN 1548-7091
DOI: 10.1038/nmeth.4144

Feasibility of deep learning for automatic parcellation of cortical regions in histological sections.

Author(s): Spitzer H, Stibane D, Caspers S, Zilles K, Amunts K, Dickscheid T
Published in: 2016

Resting-state test-retest reliability over different preprocessing steps.

Author(s): Varikuti D, Hoffstaedter F, Genon S, Schwender H, Reid A, Eickhoff S
Published in: 2016

Multimodal evidence of a rostro-caudal and ventro-dorsal organization within the right dorsal promotor cortex.

Author(s): Genon S, Li H, Fan L, Müller V, Cieslik E, Hoffstaedter F, Reid A, Langner R, Grefkes C, Fox P, Moebus S, Caspers S, Amunts K, Jiang T, Eickhoff S
Published in: 2016

Functional hierarchy in the optokinetic nystagmus network reveals functional specific sub-networks.

Author(s): Hoffstaedter F, Reid A, Grefkes C, zu Eulenberg P, Eickhoff S
Published in: 2016

Anatomo-functional correlates of visual interhemispheric communication throughout infancy.

Author(s): Adibpour P, Dehaene-Lambertz G, Dubois J
Published in: 2016

Sulcus-based alignment of infant brains to study cortical maturation with a AAL-like atlas.

Author(s): Lebenberg J, Labit M, Auzias G, Kabdebon C, Leroy F, Hertz-Pannier L, Poupon C, Dehaene-Lambertz G, Mangin J-F, Dubois J
Published in: 2016

Cyto-, receptor and fiber architecture of the rat brain registered to the Waxholm Space.

Author(s): Schubert N, Axer M, Schober M, Huynh A-M, Huysegoms M, Palomero-Gallagher N, Bjaalie J, Leergard T, Amunts K, Zilles K
Published in: 2016

Post-mortem mapping of the inner connectivity of the human hippocampus using diffusion MRI at 11.7T.

Author(s): Beaujoin J, Boumezbeur F, Bernard J, Axer M, Mangin J-F, Poupon C
Published in: 2016

Molecular correlates of resting state networks

Author(s): Palomero-Gallagher N, Schleicher A, Amunts K, Zilles K
Published in: 2016

Working memory in schizophrenia: a neuroimaging meta-analytic and VBM study.

Author(s): Cieslik E, Müller V, Janssen L, Eickhoff S
Published in: 2016

ALE meta-analysis on altered brain activity in major depression revised: A problem of reproducibility.

Author(s): Müller V, Cieslik E, Serbanescu I, Eickhoff S
Published in: 2016

Is age-related decline in cognition action control mediated by functional connectivity changes?

Author(s): Langner R, Latz A, Cieslik E, Hoffstaedter F, Pundt N, Moebus S, Caspers S, Amunts K, Eickhoff SB
Published in: 2016

Neural correlates of age-related changes in cognitive action control.

Author(s): Latz A, Hoffstaedter F, Cieslik E, Caspers S, Moebus S, Pundt N, Amunts K, Eickhoff S, Langner R
Published in: 2016

Comparing functional connectivity based predictive models across datasets

Author(s): Kamalaker Dadi, Alexandre Abraham, Mehdi Rahim, Bertrand Thirion, Gael Varoquaux
Published in: 2016 International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2016, Page(s) 1-4
DOI: 10.1109/PRNI.2016.7552359

The human dorsal premotor cortex – cytoarchitecture, maps and function.

Author(s): Sigl B, Caspers S, Mohlberg H, Cieslik E, Eickhoff S, Amunts K
Published in: 2016

Multimodal connectivity mapping of the left anterior and posterior lateral prefrontal cortex.

Author(s): Reid A, Bzdok D, Langner R, Fox P, Laird A, Amunts K, Eickhoff S, Eickhoff C
Published in: 2016

3D-reconstruction of cell distributions in the human subthalamic nucleus at 1 micron resolution

Author(s): Bludau S, Dickscheid T, Iannilli F, Amunts K
Published in: 2016

Spotlight Imaging to explore high-resolution fiber orientation maps of the rat and human brain.

Author(s): Gräßel D, Palomero-Gallagher N, Axer M, Amunts K, Zeineh M, Zilles K
Published in: 2016, Page(s) Poster 3604

Fast brain decoding with random sampling and random projections

Author(s): Andres Hoyos-Idrobo, Gael Varoquaux, Bertrand Thirion
Published in: 2016 International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2016, Page(s) 1-4
DOI: 10.1109/PRNI.2016.7552350

Astrocyte-neuron interactions in vitro and in vivo: evaluation of computational models.

Author(s): Manninen T., Havela R., Linne M.-L.
Published in: 2016, Page(s) Abstract number: FENS-3317

Social-sparsity brain decoders: faster spatial sparsity

Author(s): Gael Varoquaux, Matthieu Kowalski, Bertrand Thirion
Published in: 2016 International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2016, Page(s) 1-4
DOI: 10.1109/PRNI.2016.7552352

Space odyssey - efficient exploration of scientific data

Author(s): Mirjana Pavlovic, Eleni Tzirita Zacharatou, Darius Sidlauskas, Thomas Heinis, Anastasia Ailamaki
Published in: Proceedings of the Third International Workshop on Exploratory Search in Databases and the Web - ExploreDB '16, 2016, Page(s) 12-18
DOI: 10.1145/2948674.2948677

Pattern representation and recognition with accelerated analog neuromorphic systems

Author(s): Mihai A. Petrovici, Sebastian Schmitt, Johann Klähn, David Stöckel, Anna Schroeder, Guillaume Bellec, Johannes Bill, Oliver Breitwieser, Ilja Bytschok, Andreas Grübl, Maurice Güttler, Andreas Hartel, Stephan Hartmann, Dan Husmann, Kai Husmann, Sebastian Jeltsch, Vitali Karasenko, Mitja Kleider, Christoph Koke, Alexander Kononov, Christian Mauch, Paul Müller, Johannes Partzsch, ..., Bernhard V
Published in: 2017

Combination of two-photon fluorescence microscopy and label-free near-infrared reflectance: a new complementary approach for brain imaging

Author(s): Irene Costantini, Anna Letizia Allegra Mascaro, Emilia Margoni, Giulio Iannello, Alessandro Bria, Leonardo Sacconi, Francesco S. Pavone
Published in: Biomedical Optics 2016, 2016, Page(s) JW3A.23
DOI: 10.1364/CANCER.2016.JW3A.23

Data and Commands Communication Protocol for Neuromorphic Platform Configuration

Author(s): Alessandro Siino, Francesco Barchi, Sergio Davies, Gianvito Urgese, Andrea Acquaviva
Published in: 2016 IEEE 10th International Symposium on Embedded Multicore/Many-core Systems-on-Chip (MCSOC), 2016, Page(s) 23-30
DOI: 10.1109/MCSoC.2016.41

An Accelerated Analog Neuromorphic Hardware System Emulating NMDA- and Calcium-Based Non-Linear Dendrites

Author(s): Johannes Schemmel, Laura Kriener, Paul Müller, Karlheinz Meier
Published in: 2017

A Collaborative Simulation-Analysis Workflow for Computational Neuroscience Using HPC

Author(s): Johanna Senk, Alper Yegenoglu, Olivier Amblet, Yury Brukau, Andrew Davison, David Roland Lester, Anna Lührs, Pietro Quaglio, Vahid Rostami, Andrew Rowley, Bernd Schuller, Alan Barry Stokes, Sacha Jennifer van Albada, Daniel Zielasko, Markus Diesmann, Benjamin Weyers, Michael Denker, Sonja Grün
Published in: 2017, Page(s) 243-256
DOI: 10.1007/978-3-319-53862-4_21

High-Resolution Reconstruction of Whole Mouse Brain Vasculature with Light-Sheet Microscopy

Author(s): Antonino Paolo Di Giovanna, Ludovico Silvestri, Marie Caroline Müllenbroich, Anna Letizia Allegra Mascaro, Leonardo Sacconi, Francesco S. Pavone
Published in: Biomedical Optics 2016, 2016, Page(s) BTu4D.4
DOI: 10.1364/BRAIN.2016.BTu4D.4

Assembly pointers for variable binding in networks of spiking neurons

Author(s): Robert Legenstein, Christos H. Papadimitriou, Santosh Vempala, Wolfgang Maass
Published in: 2016

Effect of Heterogeneity on Decorrelation Mechanisms in Spiking Neural Networks: A Neuromorphic-Hardware Study

Author(s): Pfeil T, Jordan J, Tetzlaff T, Grübl A, Schemmel J, Diesmann M, Meier K
Published in: 2016
DOI: 10.12751/nncn.bc2016.0166

Label-free NIR reflectance imaging as a complimentary tool for two-photon fluorescence microscopy: multimodal investigation of stroke (Conference Presentation)

Author(s): Anna Letizia Allegra Mascaro, Irene Costantini, Emilia Margoni, Giulio Iannello, Alessandro Bria, Leonardo Sacconi, Francesco S. Pavone
Published in: Multiphoton Microscopy in the Biomedical Sciences XVI, 2016, Page(s) 97121K
DOI: 10.1117/12.2208886

Morphing Image Masks for Stacked Histological Sections Using Laplace’s Equation

Author(s): Martin Schober, Markus Axer, Marcel Huysegoms, Nicole Schubert, Katrin Amunts, Timo Dickscheid
Published in: 2017, Page(s) 146-151
DOI: 10.1007/978-3-662-49465-3_27

TRANSFORMERS: Robust spatial joins on non-uniform data distributions

Author(s): Mirjana Pavlovic, Thomas Heinis, Farhan Tauheed, Panagiotis Karras, Anastasia Ailamaki
Published in: 2016 IEEE 32nd International Conference on Data Engineering (ICDE), 2016, Page(s) 673-684
DOI: 10.1109/ICDE.2016.7498280

Towards automated neuron tracing via global and local 3D image analysis

Author(s): Ludovica Acciai, Irene Costantini, Francesco Saverio Pavone, Valerio Conti, Renzo Guerrini, Paolo Soda, Giulio Iannello
Published in: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), 2016, Page(s) 322-325
DOI: 10.1109/ISBI.2016.7493274

Mapping whole-brain activity with cellular resolution by light-sheet microscopy and high-throughput image analysis (Conference Presentation)

Author(s): Ludovico Silvestri, Nikita Rudinskiy, Marco Paciscopi, Marie Caroline Müllenbroich, Irene Costantini, Leonardo Sacconi, Paolo Frasconi, Bradley T. Hyman, Francesco S. Pavone
Published in: Clinical and Translational Neurophotonics; Neural Imaging and Sensing; and Optogenetics and Optical Manipulation, 2016, Page(s) 969012
DOI: 10.1117/12.2208603

True random number generation from bang-bang ADPLL jitter

Author(s): Felix Neumarker, Sebastian Hoppner, Andreas Dixius, Christian Mayr
Published in: 2016 IEEE Nordic Circuits and Systems Conference (NORCAS), 2016, Page(s) 1-5
DOI: 10.1109/NORCHIP.2016.7792875

Neuromorphic Hardware In The Loop: Training a Deep Spiking Network on the BrainScaleS Wafer-Scale System

Author(s): Sebastian Schmitt, Johann Klaehn, Guillaume Bellec, Andreas Gruebl, Maurice Guettler, Andreas Hartel, Stephan Hartmann, Dan Husmann, Kai Husmann, Vitali Karasenko, Mitja Kleider, Christoph Koke, Christian Mauch, Eric Mueller, Paul Mueller, Johannes Partzsch, Mihai A. Petrovici, Stefan Schiefer, Stefan Scholze, Bernhard Vogginger, Robert Legenstein, Wolfgang Maass, Christian Mayr, Johannes Schemmel
Published in: 2017

Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain

Author(s): Sharib Ali, Karl Rohr, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Markus Axer, Stefan Wörz
Published in: 2017, Page(s) 268-273
DOI: 10.1007/978-3-662-54345-0_61

A highly tunable 65-nm CMOS LIF neuron for a large scale neuromorphic system

Author(s): Syed Ahmed Aamir, Paul Muller, Andreas Hartel, Johannes Schemmel, Karlheinz Meier
Published in: ESSCIRC Conference 2016: 42nd European Solid-State Circuits Conference, 2016, Page(s) 71-74
DOI: 10.1109/ESSCIRC.2016.7598245

Adaptive gaze stabilization through cerebellar internal models in a humanoid robot

Author(s): Lorenzo Vannucci, Silvia Tolu, Egidio Falotico, Paolo Dario, Henrik Hautop Lund, Cecilia Laschi
Published in: 2016 6th IEEE International Conference on Biomedical Robotics and Biomechatronics (BioRob), 2016, Page(s) 25-30
DOI: 10.1109/BIOROB.2016.7523593

Towards a framework for end-to-end control of a simulated vehicle with spiking neural networks

Author(s): Jacques Kaiser, J. Camilo Vasquez Tieck, Christian Hubschneider, Peter Wolf, Michael Weber, Michael Hoff, Alexander Friedrich, Konrad Wojtasik, Arne Roennau, Ralf Kohlhaas, Rudiger Dillmann, J. Marius Zollner
Published in: 2016 IEEE International Conference on Simulation, Modeling, and Programming for Autonomous Robots (SIMPAR), 2016, Page(s) 127-134
DOI: 10.1109/SIMPAR.2016.7862386

Robustness from structure: Inference with hierarchical spiking networks on analog neuromorphic hardware

Author(s): Mihai A. Petrovici, Anna Schroeder, Oliver Breitwieser, Andreas Grübl, Johannes Schemmel, Karlheinz Meier
Published in: 2017

Sequential decision making based on emergent emotion for a humanoid robot

Author(s): Murat Kirtay, Lorenzo Vannucci, Egidio Falotico, Erhan Oztop, Cecilia Laschi
Published in: 2016 IEEE-RAS 16th International Conference on Humanoid Robots (Humanoids), 2016, Page(s) 1101-1106
DOI: 10.1109/HUMANOIDS.2016.7803408

Rehabilitation-triggered cortical plasticity after stroke: in vivo imaging at multiple scales (Conference Presentation)

Author(s): Anna Letizia Allegra Mascaro, Emilia Conti, Stefano Lai, Cristina Spalletti, Antonino Paolo Di Giovanna, Claudia Alia, Alessandro Panarese, Leonardo Sacconi, Silvestro Micera, Matteo Caleo, Francesco S. Pavone
Published in: Neural Imaging and Sensing, 2017, Page(s) 100510L
DOI: 10.1117/12.2250860

Rewriting Minimisations for Efficient Ontology-Based Query Answering

Author(s): Tassos Venetis, Giorgos Stoilos, Vasilis Vassalos
Published in: 2016 IEEE 28th International Conference on Tools with Artificial Intelligence (ICTAI), 2016, Page(s) 1095-1102
DOI: 10.1109/ICTAI.2016.0168

Multi Scale Morpho-functional Characterization of Damage and Rehabilitation After Stroke

Author(s): Francesco S. Pavone
Published in: Frontiers in Optics 2016, 2016, Page(s) FTh4D.1
DOI: 10.1364/FIO.2016.FTh4D.1

Modeling and simulation of multi-scale spiking neuronal networks

Author(s): Schmidt M
Published in: 2016

Dimensionality reduction for mathematical models in neuroscience.

Author(s): Lehtimäki M
Published in: 2016

Pick J, Erhebung und Analyse von Nutzeranforderungen an einen Editor für Metadaten in den Neurowissenschaften

Author(s): Pick, Jana
Published in: 2016

Connectivity structure induced dynamics and correlations in spiking neural networks

Author(s): Bos, H.
Published in: 2017

Nonlinear synaptic integration on dendrites of striatal medium spiny neuron – a computational study

Author(s): Du, K.
Published in: 2017

CaMKII activation supports reward-based neural network optimization through Hamiltonian sampling

Author(s): Yu Z, Kappel D, Legenstein R, Song S, Chen F, and Maass W
Published in: 2016

EU citizens want to be informed of the use of their personal data

Author(s): Bitsch L
Published in: 2016

Learning Active Learning from Real and Synthetic Data

Author(s): Konyushkova K, Sznitman R, Fua P
Published in: arXiv, 2017

Ethics Management and Responsible Research and Innovation in the Human Brain Project

Author(s): Rainey, Stephen ; Stahl, Bernd Carsten ; Shaw, Mark Christopher ; Reinsborough, Michael
Published in: Handbook - Responsible Innovation: A Global Resource, 2017

Including Gap Junctions into Distributed Neuronal Network Simulations

Author(s): Jan Hahne, Moritz Helias, Susanne Kunkel, Jun Igarashi, Itaru Kitayama, Brian Wylie, Matthias Bolten, Andreas Frommer, Markus Diesmann
Published in: 2016, Page(s) 43-57
DOI: 10.1007/978-3-319-50862-7_4

High-Resolution Fiber and Fiber Tract Imaging Using Polarized Light Microscopy in the Human, Monkey, Rat, and Mouse Brain

Author(s): Karl Zilles, Nicola Palomero-Gallagher, David Gräßel, Philipp Schlömer, Markus Cremer, Roger Woods, Katrin Amunts, Markus Axer
Published in: 2016, Page(s) 369-389
DOI: 10.1016/B978-0-12-801393-9.00018-9

Retina color-opponency based pursuit implemented through spiking neural networks in the Neurorobotics Platform

Author(s): Alessandro Ambrosano, Lorenzo Vannucci, Ugo Albanese, Murat Kirtay, Egidio Falotico, Pablo Martínez-Cañada, Georg Hinkel, Jacques Kaiser, Stefan Ulbrich, Paul Levi, Christian Morillas, Alois Knoll, Marc-Oliver Gewaltig, Cecilia Laschi
Published in: 2016, Page(s) 16-27
DOI: 10.1007/978-3-319-42417-0_2

Finite-Difference Time-Domain Simulation for Three-Dimensional Polarized Light Imaging

Author(s): Miriam Menzel, Markus Axer, Hans De Raedt, Kristel Michielsen
Published in: 2016, Page(s) 73-85
DOI: 10.1007/978-3-319-50862-7_6

Noisy Softplus: A Biology Inspired Activation Function

Author(s): Qian Liu, Steve Furber
Published in: 2016, Page(s) 405-412
DOI: 10.1007/978-3-319-46681-1_49

Towards Large-Scale Fiber Orientation Models of the Brain – Automation and Parallelization of a Seeded Region Growing Segmentation of High-Resolution Brain Section Images

Author(s): Anna Lührs, Oliver Bücker, Markus Axer
Published in: 2016, Page(s) 28-42
DOI: 10.1007/978-3-319-50862-7_3

Brain Imaging and Privacy Concerns

Author(s): Salles A
Published in: Farisco M Evers K Neurotechnology and Direct Brain Communication, 2016

NESTML: a modeling language for spiking neurons

Author(s): Plotnikov D, Blundell I, Ippen T, Eppler JM, Rumpe B, Morrison A.
Published in: Lecture Notes in Neuroinformatics, 2017

Eye-head stabilization mechanism for a humanoid robot tested on human inertial data

Author(s): Lorenzo Vannucci, Egidio Falotico, Silvia Tolu, Paolo Dario, Henrik Hautop Lund, Cecilia Laschi
Published in: 2016, Page(s) 341-352
DOI: 10.1007/978-3-319-42417-0_31

Comparative Analysis of Receptor Types That Identify Primary Cortical Sensory Areas

Author(s): K. Zilles, N. Palomero-Gallagher
Published in: 2017, Page(s) 225-245
DOI: 10.1016/B978-0-12-804042-3.00043-9

Visual Target Sequence Prediction via Hierarchical Temporal Memory Implemented on the iCub Robot

Author(s): Murat Kirtay, Egidio Falotico, Alessandro Ambrosano, Ugo Albanese, Lorenzo Vannucci, Cecilia Laschi
Published in: 2016, Page(s) 119-130
DOI: 10.1007/978-3-319-42417-0_12

Immunogold Protein Localization on Grid-Glued Freeze-Fracture Replicas

Author(s): Harumi Harada, Ryuichi Shigemoto
Published in: 2016, Page(s) 203-216
DOI: 10.1007/978-1-4939-6352-2_12