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Translational Brain Imaging Training Network

Deliverables

Transferable skills courses 3-4

Transferable skills courses 3-4

Scientific courses 1-4

Scientific courses 1-4

Scientific courses 5-8

Scientific courses 5-8

Transferable skills courses 1-2

Transferable skills courses 1-2

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Publications

ESMRMB 2019, 36th Annual Scientific Meeting, Rotterdam, NL, October 3–October 5: Abstracts, Thursday

Author(s): A. Zhylka, A. Leemans, J. Pluim, A. De Luca
Published in: Magnetic Resonance Materials in Physics, Biology and Medicine, 32/S1, 2019, Page(s) 1-105, ISSN 0968-5243
Publisher: Springer Verlag
DOI: 10.1007/s10334-019-00753-3

Harmonization of Brain Volumes from Magnetic Resonance Images of Multiple Sclerosis Patients Using Image Descriptors

Author(s): Maria Ines Meyer, Ezequiel de la Rosa, Greg Dudra, Eline Van Vlierberghe, Koen Van Leemput, Diana M. Sima
Published in: International Journal of MS case, Vol 21, 2019, Page(s) Pp 51
Publisher: Consortium of Multiple Sclerosis Centers

Deep learning-based detection of cortical lesions in multiple sclerosis patients with FLAIR, DIR, and MP2RAGE MRI sequences.

Author(s): F. La Rosa, M.J. Fartaria, A. Abdulkadir, R. Rahmanzadeh,, P.-J. Lu, R. Galbusera, C. Granziera, J.-P. Thiran, M. Bach Cuadra
Published in: ECTRIMS proceedings in Multiple Sclerosis Journal, 2019
Publisher: SAGE PUBLICATIONS LTD

Muti-shell Diffusion MRI Harmonisation and Enhancement Challenge (MUSHAC): Progress and Results

Author(s): Lipeng Ning, Elisenda Bonet-Carne, Francesco Grussu, Farshid Sepehrband, Enrico Kaden, Jelle Veraart, Stefano B. Blumberg, Can Son Khoo, Marco Palombo, Jaume Coll-Font, Benoit Scherrer, Simon K. Warfield, Suheyla Cetin Karayumak, Yogesh Rathi, Simon Koppers, Leon Weninger, Julia Ebert, Dorit Merhof, Daniel Moyer, Maximilian Pietsch, Daan Christiaens, Rui Teixeira, Jacques-Donald Tournier, Andrey Z
Published in: Computational Diffusion MRI - International MICCAI Workshop, Granada, Spain, September 2018, 2019, Page(s) 217-224, ISBN 978-3-030-05830-2
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-05831-9_18

Neural Parameters Estimation for Brain Tumor Growth Modeling

Author(s): Ivan Ezhov, Jana Lipkova, Suprosanna Shit, Florian Kofler, Nore Collomb, Benjamin Lemasson, Emmanuel Barbier, Bjoern Menze
Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part II, 11765, 2019, Page(s) 787-795, ISBN 978-3-030-32244-1
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-32245-8_87

Robust Biophysical Parameter Estimation with a Neural Network Enhanced Hamiltonian Markov Chain Monte Carlo Sampler

Author(s): Thomas Yu, Marco Pizzolato, Gabriel Girard, Jonathan Rafael-Patino, Erick Jorge Canales-Rodríguez, Jean-Philippe Thiran
Published in: Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, June 2–7, 2019, Proceedings, 11492, 2019, Page(s) 818-829, ISBN 978-3-030-20350-4
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-20351-1_64

Shape-Aware Complementary-Task Learning for Multi-organ Segmentation

Author(s): Fernando Navarro, Suprosanna Shit, Ivan Ezhov, Johannes Paetzold, Andrei Gafita, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze
Published in: Machine Learning in Medical Imaging - 10th International Workshop, MLMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13, 2019, Proceedings, 11861, 2019, Page(s) 620-627, ISBN 978-3-030-32691-3
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-32692-0_71

A novel segmentation framework for uveal melanoma in magnetic resonance imaging based on class activation maps

Author(s): Huu-Giao Nguyen, Alessia Pica, Jan Hrbacek, Damien C. Weber, Francesco La Rosa, Ann Schalenbourg, Raphael Sznitman, Meritxell Bach Cuadra
Published in: MIDL2019, 2019
Publisher: Proceedings of Machine Learning Research

Quantifying Residual Motion Artifacts in Fetal fMRI Data

Author(s): Athena Taymourtash, Ernst Schwartz, Karl-Heinz Nenning, Daniel Sobotka, Mariana Diogo, Gregor Kasprian, Daniela Prayer, Georg Langs
Published in: Smart Ultrasound Imaging and Perinatal, Preterm and Paediatric Image Analysis - First International Workshop, SUSI 2019, and 4th International Workshop, PIPPI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13 and 17, 2019, Proceedings, 11798, 2019, Page(s) 171-180, ISBN 978-3-030-32874-0
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-32875-7_19

Relevance Vector Machines for Harmonization of MRI Brain Volumes Using Image Descriptors

Author(s): Maria Ines Meyer, Ezequiel de la Rosa, Koen Van Leemput, Diana M. Sima
Published in: OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging - Second International Workshop, OR 2.0 2019, and Second International Workshop, MLCN 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13 and 17, 2019, Proceedings, 11796, 2019, Page(s) 77-85, ISBN 978-3-030-32694-4
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-32695-1_9

Implicit Neural Solver for Time-dependent Linear PDEs with Convergence Guarantee

Author(s): Suprosanna Shit, Abinav Ravi Venkatakrishnan, Ivan Ezhov, Jana Lipkova, Marie Piraud, Bjoern Menze
Published in: NeurIPS 2019, 2019
Publisher: NIPS proceedings

Incompressible Image Registration Using Divergence-Conforming B-Splines

Author(s): Lucas Fidon, Michael Ebner, Luis C. Garcia-Peraza-Herrera, Marc Modat, Sébastien Ourselin, Tom Vercauteren
Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part II, 11765, 2019, Page(s) 438-446, ISBN 978-3-030-32244-1
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-32245-8_49

Robust T 2 Relaxometry With Hamiltonian MCMC for Myelin Water Fraction Estimation

Author(s): Thomas Yu, Marco Pizzolato, Erick Jorge Canales-Rodriguez, Jean-Philippe Thiran
Published in: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 2019, Page(s) 1813-1817, ISBN 978-1-5386-3641-1
Publisher: IEEE
DOI: 10.1109/isbi.2019.8759446

Shallow vs Deep Learning Architectures for White Matter Lesion Segmentation in the Early Stages of Multiple Sclerosis

Author(s): Francesco La Rosa, Mário João Fartaria, Tobias Kober, Jonas Richiardi, Cristina Granziera, Jean-Philippe Thiran, Meritxell Bach Cuadra
Published in: Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Revised Selected Papers, Part I, 11383, 2019, Page(s) 142-151, ISBN 978-3-030-11722-1
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-11723-8_14

clDice - a Novel Connectivity-Preserving Loss Function for Vessel Segmentation

Author(s): Johannes Paetzold, Suprosanna Shit, Ivan Ezhov, Giles Tetteh, Ali Ertuerk, Bjoern Menze
Published in: NeurIPS 2019, 2019
Publisher: NIPS proceedings

A Radiomics Approach to Traumatic Brain Injury Prediction in CT Scans

Author(s): Ezequiel de la Rosa, Diana M. Sima, Thijs Vande Vyvere, Jan S. Kirschke, Bjoern Menze
Published in: Proceedings IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019). Apr. 2019, IEEE., 2019, Page(s) pp. 732-735, ISBN 978-1-5386-3641-1
Publisher: IEEE
DOI: 0.1109/isbi.2019.8759229

Segmentation-based registration of ultrasound volumes for glioma resection in image-guided neurosurgery

Author(s): Luca Canalini, Jan Klein, Dorothea Miller, Ron Kikinis
Published in: International Journal of Computer Assisted Radiology and Surgery, 14/10, 2019, Page(s) 1697-1713, ISSN 1861-6410
Publisher: Springer Verlag
DOI: 10.1007/s11548-019-02045-6

A modality-adaptive method for segmenting brain tumors and organs-at-risk in radiation therapy planning

Author(s): Mikael Agn, Per Munck af Rosenschöld, Oula Puonti, Michael J. Lundemann, Laura Mancini, Anastasia Papadaki, Steffi Thust, John Ashburner, Ian Law, Koen Van Leemput
Published in: Medical Image Analysis, 54, 2019, Page(s) 220-237, ISSN 1361-8415
Publisher: Elsevier BV
DOI: 10.1016/j.media.2019.03.005

Registration of Ultrasound Volumes Based on Euclidean Distance Transform

Author(s): Luca Canalini, Jan Klein, Dorothea Miller, Ron Kikinis
Published in: Large-Scale Annotation of Biomedical Data and Expert Label Synthesis and Hardware Aware Learning for Medical Imaging and Computer Assisted Intervention - International Workshops, LABELS 2019, HAL-MICCAI 2019, and CuRIOUS 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13 and 17, 2019, Proceedings, 11851, 2019, Page(s) 127-135, ISBN 978-3-030-33641-7
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-33642-4_14