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Deciphering Tolerogenic, Tumor-induced Epigenetic imprints in myeloid precursors

Project description

Hidden immune changes and cancer relapse

Recurrence of cancer is a frequent phenomenon, even after the primary tumour has been surgically removed. Moreover, this relapse often coincides with the onset of metastatic disease. With the support of the Marie Skłodowska-Curie Actions programme, the TT-EPIC project is exploring the hypothesis that tumours induce long-lasting alterations in the immune system. The research team aims to elucidate the mechanisms by which tumours modulate bone marrow cells to become less effective at fighting cancer. Using melanoma as a model, the study will investigate how tumour signals permanently reprogramme these cells at the genetic and epigenetic level. The goal is to identify and reverse this immune dysfunction, offering new ways to prevent cancer relapse.

Objective

Despite successful surgical removal of primary tumors, many cancer patients ultimately succumb to metastatic relapse, often years after apparent cure. How tumors imprint long-lasting changes on the immune system that favor this deadly recurrence remains largely unknown. Tumors can epigenetically and transcriptionally reprogram bone marrow progenitors, establishing a “trained tolerance” state in myeloid cells that promotes immune evasion and metastasis. I hypothesize that tumor-derived factors induce long-lasting epigenetic and transcriptional reprogramming of bone marrow myeloid progenitors, establishing a state of Tumor-Trained Tolerance (TTT) that promotes systemic immune suppression and metastatic susceptibility even after complete removal of the primary tumor. Using melanoma as a clinically relevant model, I will dissect how tumor-induced reprogramming persists after tumor resection, identify the key molecular regulators, including MYC and epigenetic factors, and test whether these alterations can be reversed to restore immune vigilance. By integrating single-cell multi-omics (scRNA-seq, scATAC-seq, CITE-seq), proteomics, and targeted epigenetic profiling (histone marks and DNA methylation), I will map the regulatory networks underlying trained tolerance. Functional perturbations with CRISPR-based and pharmacological tools will determine causality and assess the potential to prevent metastasis. Finally, analysis of blood samples from melanoma patients will evaluate whether these signatures are conserved in humans, providing translational insight. This project combines cutting-edge molecular, computational, and in vivo approaches to reveal the hidden systemic consequences of primary tumors, aiming to uncover novel strategies to prevent the deadliest phase of cancer: metastatic relapse.

Fields of science (EuroSciVoc)

Keywords

Programme(s)

Topic(s)

Funding Scheme

HORIZON-TMA-MSCA-PF-EF - HORIZON TMA MSCA Postdoctoral Fellowships - European Fellowships

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Call for proposal

(opens in new window) HORIZON-MSCA-2025-PF

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Coordinator

VIB VZW
Net EU contribution
€ 216 240,00
Address
SUZANNE TASSIERSTRAAT 1
9052 ZWIJNAARDE - GENT
Belgium
Region
Vlaams Gewest Prov. Oost-Vlaanderen Arr. Gent
Activity type
Research Organisations
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Total cost
No data