Laying the Biological, Computational and Architectural Foundations for Human Cell Lineage Discovery

Información del proyecto

LineageDiscovery

Identificador del acuerdo de subvención: 670535

DOI 10.3030/670535

Proyecto cerrado

Fecha de la firma de la CE 7 Agosto 2015

Fecha de inicio 1 Septiembre 2015

Fecha de finalización 31 Enero 2021

Financiado con arreglo a

• EXCELLENT SCIENCE - European Research Council (ERC)

Coste total € 2 250 000,00

Aportación de la UE € 2 250 000,00

Coordinado por

WEIZMANN INSTITUTE OF SCIENCE
Israel

Publicaciones

Peer reviewed articles (9)

Whole-Genome Amplification—Surveying Yield, Reproducibility, and Heterozygous Balance, Reported by STR-Targeting MIPs

Autores: Ofir Raz, Liming Tao, Tamir Biezuner, Tzipy Marx, Yaara Neumeier, Narek Tumanyan, Ehud Shapiro
Publicado en: International Journal of Molecular Sciences, 2022, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23116161

A generic, cost-effective, and scalable cell lineage analysis platform

Autores: Tamir Biezuner, Adam Spiro, Ofir Raz, Shiran Amir, Lilach Milo, Rivka Adar, Noa Chapal-Ilani, Veronika Berman, Yael Fried, Elena Ainbinder, Galit Cohen, Haim M. Barr, Ruth Halaban, Ehud Shapiro
Publicado en: Genome Research, Edición 26/11, 2016, Página(s) 1588-1599, ISSN 1088-9051
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.202903.115

eSTGt: a programming and simulation environment for population dynamics

Autores: Adam Spiro, Ehud Shapiro
Publicado en: BMC Bioinformatics, Edición 17/1, 2016, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-016-1004-y

Erratum to: eSTGt: a programming and simulation environment for population dynamics

Autores: Spiro, Adam; Shapiro, Ehud
Publicado en: BMC Bioinformatics, Edición 1, 2016, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-016-1155-x

Accuracy of Answers to Cell Lineage Questions Depends on Single-Cell Genomics Data Quality and Quantity

Autores: Adam Spiro; Ehud Shapiro
Publicado en: PLoS Computational Biology, Edición 1, 2016, ISSN 1553-734X
Editor: Public Library of Science
DOI: 10.1371/journal.pcbi.1004983

On the journey from nematode to human, scientists dive by the zebrafish cell lineage tree

Autores: Ehud Shapiro
Publicado en: Genome Biology, Edición 19/1, 2018, ISSN 1474-760X
Editor: BMC
DOI: 10.1186/s13059-018-1453-x

Short tandem repeat stutter model inferred from direct measurement of in vitro stutter noise

Autores: Ofir Raz, Tamir Biezuner, Adam Spiro, Shiran Amir, Lilach Milo, Alon Titelman, Amos Onn, Noa Chapal-Ilani, Liming Tao, Tzipy Marx, Uriel Feige, Ehud Shapiro
Publicado en: Nucleic Acids Research, Edición 47/5, 2019, Página(s) 2436-2445, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gky1318

Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees

Autores: W Gong, AA Granados, J Hu, MG Jones, O Raz, I Salvador-Martínez,…Ehud Shapiro, MichaelB.Elowitz, Pablo Meyer
Publicado en: Cell Systems, 2021, ISSN 2405-4712
Editor: CellPress
DOI: 10.1016/j.cels.2021.05.008

Retrospective cell lineage reconstruction in humans by using short tandem repeats

Autores: Liming Tao, Ofir Raz, Zipora Marx, Manjusha S Ghosh, Sandra Huber, Julia Greindl-Junghans, Tamir Biezuner, Shiran Amir, Lilach Milo, Rivka Adar, Ron Levy, Amos Onn, Noa Chapal-Ilani, Veronika Berman, Asaf Ben Arie, Guy Rom, Barak Oron, Ruth Halaban, Zbigniew T.Czyz, Melanie Warner-Klein, Christoph A. Klein, Ehud Shapiro
Publicado en: Cell reports methods, 2021, ISSN 2667-2375
Editor: CellPress
DOI: 10.1016/j.crmeth.2021.100054