GEroNIMO: Genome and Epigenome eNabled breedIng in MOnogastrics

Información del proyecto

GEroNIMO

Identificador del acuerdo de subvención: 101000236

Sitio web del proyecto

DOI

10.3030/101000236

Fecha de la firma de la CE 6 Mayo 2021

Fecha de inicio 1 Junio 2021

Fecha de finalización 31 Mayo 2026

Financiado con arreglo a

SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Coste total

€ 7 065 713,25

Aportación de la UE

€ 6 999 962,25

6 999 962,25

65 751,00

Coordinado por

INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT
France

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Practice Abstracts - batch 1

This deliverable contains at least 2 practice abstracts.

Adaptation of the optiSel R Package

Adaptation of the optiSel R Package to account for major genes

Multi-actor Approach Report

Report summarizing main activities done with stakeholders including an assessment of main problems faced by partners working with stakeholders and contingency measures implemented to tackle and resolve them. Update at M60 includes an assessment of the impact and effectiveness of Stakeholders participation in the project.

Report on the surveys assessing management schemes of local breeds over Europe in monogastrics

A compilation of the answers of different breeds and species will be performed

Characterization of DNA methylation in pig and chicken

Analysis of DNA methylation data and estimation of DNA methylation heritability to be used in WP4.

Comprehensive phenotype recording for ELP traits in pig and chicken

Large-scale phenotype recording will be made available for traits related to quality (egg, sperm and meat), egg production, feed efficiency, health and growth.

Simulation study of breeding strategies for a dual-purpose breed

A simulation study of different breeding strategies for establishing a dual-purpose breed from two divergently selected chicken breeds, incorporating optimum contributions selection to control for genetic diversity, will be reported.

Characterization of feed and heat stress on epigenetic variation in chicken and pig

Differential methylated regions between control and stressed individuals will be detected in different breeds of pigs and chickens and integrated with transcriptomes and phenotypes for better understanding epi/genetic adaptation to feed and heat stresses.

Identification of methylation lifetime changes in relation to welfare in chicken

Epigenetic variation throughout chicken lifetime will be estimated and will be correlated with behavioural and welfare traits phenotypic variation.

The importance of national and regional dimensions on the societal and ethical concerns of genomics innovations

An analysis of national and regional dimensions for the societal and ethical concerns will be delivered, tailored to the context of genomics innovation and animal breeding.

Interviews and focus groups feedbacks about the evaluation of genomics innovations

A report on the results of the interviews and focus groups in four countries will be made available.

Outreach, Dissemination and Training Plan (ODTP)

ODTP will be submitted at M6 and will be regularly updated in the course of the project depending on the project progress, newly available opportunities for communication and dissemination activities.

Characterization of the seasonality impact on epigenetic variation in pig

Data integration of methylation patterns with other data (RNA-seq, phenotypes and climate indices) will be performed to identify significant correlations between epigenetic variation, seasonality in relation to female prolificacy and male sperm quality.

Publicaciones

Influence of early rearing system on later performance of commercial laying hens

Autores: Q. Berger, N. Bedere, P. Le-Roy, S. Lagarrigue, T. Burlot, T. Zerjal
Publicado en: Book of abstracts of 74th European Federation of Animal Science Annual Meeting, Edición August 2023, 2023
Editor: Proceedings EAAP https://doi.org/10.3920/978-90-8686-936-7

Genetic architecture of the persistency of production, quality, and efficiency traits in laying hens

811. Estimating vertical path coefficients of transmission of non-genetic inherited effects from a similarity matrix

Autores: I. David, C. Larzul, A. Ricard
Publicado en: Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP), 2023
Editor: Wageningen Academic Publishers
DOI: 10.3920/978-90-8686-940-4_811

The effect of on-farm hatching on spatial traits in a quasi-commercial barn

Autores: M. B. Petelle, C. M. Montalcini, M. J. Toscano
Publicado en: European's Poultry Conference Journal - The Book of Abstracts, Edición 24th-28th June 2024, 2024
Editor: meap

Gene Polymorphism Frequencies in Krskopolje Pig Breed

Autores: K. Poklukar, M. Čandek-Potokar, N. Batorek Lukač, MJ. Mercat, D. Picard Druet, M. Škrlep
Publicado en: Book of abstracts of the 14th International Symposium Modern Trends in Livestock Production, Edición October 2023, 2023, ISBN 978-86-82431-80-0
Editor: Proceedings of the 14th International Symposium Modern Trends in Livestock Production

Growth potential of Krškopolje pigs in different production systems.

Autores: BATOREK LUKAČ, Nina, ČANDEK-POTOKAR, Marjeta
Publicado en: Book of abstracts of the XIth International Symposium on Mediterranean Pig, Edición October 11-13, 2022, 2022, Página(s) 43-44, ISBN 978-953-8276-35-4
Editor: University of Zagreb

The effect of PRKAG3 and RYR1 genes on meat quality traits in the local Krskopolje pig breed

Using functional annotation and individual omics in genomic prediction

Autores: M. P. L. Calus, B. C. Perez, J. de Vos, O. Madsen, L. Ayres, H. Bovenhuis, M. Ballester, MJ. Mercat, M. C. A. M. Bink
Publicado en: Book of abstracts of 39th International Society for Animal Genetics Conference, Edición July 2023, 2023, Página(s) 45
Editor: ISAG

Taming the Genome: Epigenetic Contributions to Domestication and Sex-Specific Regulation in Chickens

Autores: C. Guerrero-Bosagna
Publicado en: Book of Abstracts of the Congress of the European Society for Evolucionary Biology 2025 (ESEB2025), Edición 17th-22th August 2025, 2025, Página(s) p30
Editor: Sociedad Española de Biologia Evolutiva (Sesbe)

The effect of low protein diet on adipose tissue transcriptome in Krškopolje pig breed

Autores: K. Poklukar, M. Čandek-Potokar, N. Batorek Lukač, M. Vrecl, G. Fazarinc, M. Škrlep
Publicado en: Book of abstracts of the 1st Regional Meeting of The European Federation of Animal Science, Edición April 2024, 2024
Editor: 1st Regional Meeting of The European Federation of Animal Science

Transgenerational response to endocrine disruptor: phenotypic, genotypic and epigenotypic analyses in quail

Autores: S. Rousse, S. Leroux, D. Gourichon, L. Calandreau, C. Cerutti, G. Devailly, T. Zerjal, S. Lagarrigue, F. Pitel, S. E. Eynard
Publicado en: Book of abstracts of the Environmental and Agronomical Genomics Symposium, Edición February 2024, 2024
Editor: France Genomic

Using henomic and transcriptomic information for complex trait prediction

Autores: V. Haas, R. Wellmann, M. P. L. Calus, J. Bennewitz
Publicado en: Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (EAAP), Edición 1st-5th September 2024, 2024
Editor: EAAP

HenTrack: Improving breeding programs with superior behavior and welfare phenotypes

Autores: M. Toscano
Publicado en: Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (EAAP), Edición 1st-5th September 2024, 2024
Editor: EAAP

Assessing multiphase feeding sequencing plan designed for fatty type pigs in indoor and outdoor heavy pig production systems by modeling: an example of Krškopolje pig.

Autores: BATOREK LUKAČ, Nina, ŠKRLEP, Martin, POKLUKAR ŽNIDARŠIČ, Klavdija, MILLET, Sam, ČANDEK-POTOKAR, Marjeta.
Publicado en: Book of abstracts of the 7th EAAP International Symposium on Energy and Protein Metobolism and Nutrition (ISEP), Edición September 12-15, 2022, 2022
Editor: EAAP

Stakeholders’ perception of the local breeds’ sector in six European countries - a survey by the GEroNIMO project

Autores: Marie-José MERCAT, Andreia AMARAL, Riccardo BOZZI, Marjeta ČANDEK-POTOKAR, Pedro FERNANDES, Jetsabell GUTIERREZ VALLEJOS, Danijel KAROLYI, Denis LALOë, Zoran LUKOVIć, Gwendal RESTOUX, António VICENTE, Virginia RIBEIRO, Tamara RODRIGUEZ SILVA, Romuald ROUGER, Dubravko ŠKORPUT, Martin ŠKRLEP
Publicado en: Book of abstracts of the XIth International Symposium on the Mediterranean pig, Edición October 11-13, 2022, 2022, Página(s) 87-88, ISBN 978-953-8276-35-4
Editor: UNIZG

GEroNIMO (Genome and Epigenome eNabled breedIng in MOnogastrics)

Autores: S. Lagarrigue, F. Pitel, T. Zerjal for the GEroNIMO consortium
Publicado en: Book of abstracts of 74th European Federation of Animal Science Annual Meeting, Edición August 2023, 2023
Editor: Proceedings EAAP https://doi.org/10.3920/978-90-8686-936-7

Perceptions of stakeholders involved in preserving local breeds - a survey by the GEroNIMO project

Autores: MJ. Mercat, A. Amaral, R. Bozzi, M. Candek-Potokar, P. Fernandes, J. Gutierrez Vallejos, D. Karolyi, D. Laloë, Z. Lukovic, H. Lenoir, G. Restoux, A. Vicente, V. Ribeiro, T. Rodriguez Silva, R. Rouger, D. Skroput, M. Skrlep
Publicado en: Journées de la Recherche Porcine, Edición 9, 2023
Editor: Ifip; Inrae,

A IncRNA gene-enriched atlas for GRCg7b chicken genome gathering EMBL-EBI EnsembI, NCBI-RefSeq and two FAANG databases

Autores: F. Degalez, M. Charles, S. Foissac, H. Zhou, D. Guan, L. Fang, C. Klopp, C. Alain, L. Lagoutte, B. Lebez, F. Lecerf, B. Vourch, T. Zerjal, F. Pitel, S. Lagarrigue
Publicado en: Book of abstracts of 74th European Federation of Animal Sciences Annual Meeting, Edición August 2023, 2023
Editor: Proceedings EAAP https://doi.org/10.3920/978-90-8686-936-7

Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology

Autores: S. E. Eynard, C. Donnadieu, L. Flatres-Grall, C. Iampietro, S. Lagarrigue, S. Leroux, J. Lledo, J. Riquet, B. Servin, C. Vandecasteele, T. Zerjal, F. Pitel
Publicado en: Book of abstracts of Environmental and Agronomical Genomics Symposium, Edición February 2024, 2024
Editor: EAGS

Association between melanocortin 4-receptor (MC4R) polymorphism with carcass and meat quality traits in local Krškopolje pig breed

Autores: K. Poklukar, M. Čandek-Potokar, MJ. Mercat, M. Škrlep
Publicado en: 32nd Internaltional Sysposium Animal Science Days 2024 Book of Abstracts, Edición 2nd-4th October 2024, 2024
Editor: Universitat fur Bodenkultur

From womb to bloom: conception, early life and maternal effects on boar semen production

Autores: P. Sá, R. M. Godinho, M. Gòdia, C. A. Sevillano, B. Harlizius, O. Madsen, H. Bovenhuis
Publicado en: Bookf of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (EAAP), Edición 1st-5th September 2024, 2024
Editor: EAAP

Integrating Transcriptomics and Epigenomics for Enhanced Breeding Programs in Pigs

Autores: M. Luigi, P. Karlskov-Mortensen
Publicado en: 5th Annual congress of Young Researchers (ACYR), Edición 10th-11th March 2025, 2025
Editor: ACYR

Polymorphisms of selected genes in Banija spotted and Turopolje pig

Autores: D. Karolyi, K. Poklukar, K. Salajpal, D. Skorput, Z. Lukovic, MJ. Mercat, M. Candek-Potokar, M. Skrlep
Publicado en: 32nd International Symposium Animal Science Days 2024, Book of Abstracts, Edición 2nd-4th October 2024, 2024
Editor: Universitat fur Bodenkultur

Banija spotted pig – from science to practise

Autores: Zoran Luković, Dubravko Škorput, Krešimir Salajpal, Sven Menčik, Danijel Karolyi
Publicado en: Book of abstracts of the XIth International Symposium on the Mediterranean pig, Edición October 11-13, 2022, 2022, Página(s) 51-52, ISBN 978-953-8276-35-4
Editor: UNIZG

On the genetic basis of porcine semen traits: a large-scale genome-wide study on a synthetic line

Autores: P. Sá, R. M. Godinho, M. Gòdia, C. A. Sevillano, B. Harlizius, O. Madsen, H. Bovenhuis
Publicado en: Book of abstracts of 39th International Society for Animal Genetics Conference, Edición July 2023, 2023, Página(s) 18
Editor: ISAG

Comparison of haematological profiles between Alentejano and commercial (LWxLR) pigs

Autores: Luísa Mateus, Graça Ferreira Dias, Maria Salomé, Gonçalves, Pamela Valente, Elisa Bettencourt, Luís Telo da Gama, Carlos Bettencourt, Andreia J. Amaral
Publicado en: Book of abstracts of the CIISA Congress 2022 Lisbon, Portugal)., Edición November 2022, 2022, Página(s) 150
Editor: CIISA

Stakeholders’ perception of the local breeds’ sector in six European countries - a survey by the GEroNIMO project

Autores: Marie-José MERCAT, Andreia AMARAL, Riccardo BOZZI, Marjeta ČANDEK-POTOKAR, Pedro FERNANDES, Jetsabell GUTIERREZ VALLEJOS, Danijel KAROLYI, Denis LALOë, Zoran LUKOVIć, Gwendal RESTOUX, António VICENTE, Virginia RIBEIRO, Tamara RODRIGUEZ SILVA, Romuald ROUGER, Dubravko ŠKORPUT, Martin ŠKRLEP
Publicado en: Book of abstracts of the XI International Symposium on the Mediterranean pig, Edición 4, 2022, ISBN 978-953-8276-35-4
Editor: University of Zagreb Faculty of Agriculture
DOI: 10.5281/zenodo.14870239

Feed stress-induced transcriptomic changes in the liver of Krškopolje pigs reared in the outdoor system

Autores: K. Poklukar, M. Čandek-Potokar, M. Vrecl, M. Škrlep
Publicado en: Book of Abstracts of the 3rd Regional Meeting of the European Federation of Animal Science (EAAP), Edición 9th-11th April 2025, 2025
Editor: EAAP

A single-locus quantitative generic model to include DNA methylation information

Autores: L. Ayres, M. P. L. Calus, H. Bovenhuis
Publicado en: Book of abstracts 7th International Conference of Quantitative Genetics, Edición 22nd-26th July 2024, 2024
Editor: Institute of Science and Technology Austria (ISTA)

The evolution of epigenetics across multiple generations

Autores: S. E. Eynard, C. Donnadieu, L. Flatres-Grall, C. Iampietro, S. Lagarrigue, S. Leroux, J. Lledo, J. Riquet, B. Servin, C. Vandecasteele, T. Zerjal, F. Pitel
Publicado en: Book of abstracts of Epigenetic Trangenerational Inheritance Meeting, Edición September 2023, 2023
Editor: Epigenetic Trangenerational Inheritance Meeting

A IncRNA gene-enriched atlas for GRCg7b chicken genome & its functional annotation across 47 tissues

Autores: F. Degalez, M. Charles, S. Foissac, H. Zhou, D. Guan, L. Fang, C. Klopp, C. Alain, L. Lagoutte, B. Lebez, F. Lecerf, B. Vourch, T. Zerjal, F. Pitel, S. Lagarrigue
Publicado en: Book of abstracts of 39th International Society for Animal Genetics Conference, Edición July 2023, 2023, Página(s) 49
Editor: ISAG

Genetic polymorphisms in Krškopolje pig breed

Autores: K. Poklukar, M. Čandek-Potokar, MJ. Mercat, M. Škrlep
Publicado en: Zadravčevi-Erjavčevi Dnevi 2024, Edición 14th November 2024, 2024
Editor: ZED

Estimating the heritability of meat quality traits in Krškopolje pigs

Autores: K. Poklukar, M. Čandek-Potokar, MJ. Mercat, M. Banville, M. Škrlep
Publicado en: Book of Abstracts of the 3rd Regional Meeting of the European Federation of Animal Science (EAAP), Edición 9th-11th April 2025, 2025
Editor: EAAP

Added value of functional annotation and individual omics in genomic prediction

Autores: M. P. L. Calus
Publicado en: AGBT: Agricultural Meeting, Edición April 2024, 2024
Editor: AGBT Ag; DOI not available

Perceptions of stakeholders involved in preserving local breeds - a survey by the GEroNIMO project

Attitudes towards genome editing in farmed animals: An interview study

Autores: L. Borgdorf, F.L.B. Meijboom
Publicado en: Back to the future: Sustainable innovations for ethical food production and Consumption, 2024
Editor: Brill Publishers
DOI: 10.3920/978-90-0471-550-9_44

O197 Assessing multiphase feeding sequencing plan designed for fatty type pigs in indoor and outdoor heavy pig production systems by modeling – an example of Krškopolje pig

Autores: N. Batorek-Lukač, M. Škrlep, K. Poklukar, S. Millet, M. Čandek-Potokar
Publicado en: Animal - science proceedings, Edición 13, 2023, Página(s) 495-496, ISSN 2772-283X
Editor: Elsevier BV
DOI: 10.1016/j.anscip.2022.07.207

Turopolje Pig: Between Conservation and Sustainability

Autores: D. Skorput, A. Kaic, M. Spehar, D. Karolyi, Z. Lukovic
Publicado en: Sustainability, 2024, ISSN 2071-1050
Editor: MDPI Open Access Publishing
DOI: 10.3390/su16051786

Enriched atlas of IncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues

Autores: F. Degalez, M. Charles, S. Foissac, H. Zhou, D. Guan, L. Fang, C. Klopp, C. Allain, L. Lagoutte, F. Lecerf, H. Acloque, E. Giuffra, F. Pitel, S. Lagarrigue
Publicado en: Scientific Reports, 2024, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-024-56705-y

A single-locus quantitative genetic model incorporating DNA methylation

Autores: L. Ayres, H. Bovenhuis, M.P.L. Calus
Publicado en: Journal of Theoretical Biology, Edición 607, 2025, Página(s) 112110, ISSN 0022-5193
Editor: Academic Press
DOI: 10.1016/j.jtbi.2025.112110

Co-occurring microbial guilds in pig fecal microbiota: key drivers and effects on host performance

Autores: Ioanna-Theoni Vourlaki, Raquel Rio-Lopez, Adrià Clavell-Sansalvador, Lino C. Ramírez-Ayala, Maria Ballester, Juan P. Sanchez, Miriam Piles, Raquel Quintanilla, Angela C. da Fonseca de Oliveira, Leandro Batista Costa, Antoni Dalmau, Yuliaxis Ramayo-Caldas
Publicado en: Genetics Selection Evolution, Edición 57, 2025, ISSN 1297-9686
Editor: BioMed
DOI: 10.1186/s12711-025-00979-x

Growth Performance, Carcass Quality, and Lipid Metabolism in Krškopolje Pigs and Modern Hybrid Pigs: Comparison of Genotypes and Evaluation of Dietary Protein Reduction

Autores: Martin Škrlep, Klavdija Poklukar, Milka Vrecl, Jana Brankovič, Marjeta Čandek-Potokar
Publicado en: Animals, Edición 14, 2025, Página(s) 3331, ISSN 2076-2615
Editor: MDPI AG
DOI: 10.3390/ani14223331

Genetic parameters and parental and early-life effects of boar semen traits

Autores: Pedro Sá, Rodrigo M. Godinho, Marta Gòdia, Claudia A. Sevillano, Barbara Harlizius, Ole Madsen, Henk Bovenhuis
Publicado en: Genetics Selection Evolution, Edición 57, 2025, ISSN 1297-9686
Editor: Springer Science and Business Media LLC
DOI: 10.1186/s12711-025-00954-6

The Effect of Reduced Dietary Protein on Adipose Tissue in Local Krškopolje Pigs

Autores: Klavdija Poklukar, Marjeta Čandek-Potokar, Milka Vrecl, Jana Brankovič, Matjaž Uršič, Martin Škrlep
Publicado en: International Journal of Molecular Sciences, Edición 26, 2025, Página(s) 4440, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms26094440

Reducing Protein Levels in Diets for Local Pig Breeds: A Case Study on Fat-Type Krškopolje Pig

Autores: Martin Škrlep, Klavdija Poklukar, Sam Millet, Marjeta Čandek-Potokar
Publicado en: Animal Science Journal, Edición 96, 2025, Página(s) e70077, ISSN 1740-0929
Editor: Wiley
DOI: 10.1111/asj.70077

Simulation of dual-purpose chicken breeding programs implementing gene editing

Autores: E. Y. S. Chuang, R. Wellmann, F. L. B. Meijboom, J. Tetens, J. Bennewitz
Publicado en: Genetics Selection Evolution, 2024, ISSN 0999-193X
Editor: BioMed Central
DOI: 10.1186/s12711-023-00874-3

GEGA (Gallus Enriched Gene Annotation): an online tool providing genomics and functional information across 47 tissues for a chicken gene-enriched atlas gathering Ensembl and Refseq genome annotations

Autores: Fabien Degalez, Philippe Bardou, Sandrine Lagarrigue
Publicado en: NAR Genomics and Bioinformatics, Edición 6, 2024, ISSN 2631-9268
Editor: Oxford University Press (OUP)
DOI: 10.1093/nargab/lqae101

Empowering bioinformatics communities with Nextflow and nf-core

Autores: Björn E. Langer, Andreia Amaral, Marie-Odile Baudement, Franziska Bonath, Mathieu Charles, Praveen Krishna Chitneedi, Emily L. Clark, Paolo Di Tommaso, Sarah Djebali, Philip A. Ewels, Sonia Eynard, James A. Fellows Yates, Daniel Fischer, Evan W. Floden, Sylvain Foissac, Gisela Gabernet, Maxime U. Garcia, Gareth Gillard, Manu Kumar Gundappa, Cervin Guyomar, Christopher Hakkaart, Friederike Hanssen
Publicado en: Genome Biology, Edición 26, 2025, ISSN 1474-760X
Editor: Springer Science and Business Media LLC
DOI: 10.1186/s13059-025-03673-9

An improved transmissibility model to detect transgenerational transmitted environmental effects

Autores: I. David, A. Ricard
Publicado en: Genetics Selection Evolution, 2023, ISSN 0999-193X
Editor: BioMed Central
DOI: 10.1186/s12711-023-00833-y

Growth potential of Krškopolje pigs in different production systems.

Autores: BATOREK LUKAČ, Nina, ČANDEK-POTOKAR, Marjeta
Publicado en: Book of abstracts. XIth International Symposium on Mediterranean Pig, Edición 5, 2022, ISBN 978-953-8276-35-4
Editor: University of Zagreb, Faculty of agriculture

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