GEroNIMO: Genome and Epigenome eNabled breedIng in MOnogastrics

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Practice Abstracts - batch 1

This deliverable contains at least 2 practice abstracts.

Adaptation of the optiSel R Package

Adaptation of the optiSel R Package to account for major genes

Multi-actor Approach Report

Report summarizing main activities done with stakeholders including an assessment of main problems faced by partners working with stakeholders and contingency measures implemented to tackle and resolve them. Update at M60 includes an assessment of the impact and effectiveness of Stakeholders participation in the project.

Report on the surveys assessing management schemes of local breeds over Europe in monogastrics

A compilation of the answers of different breeds and species will be performed

Comprehensive phenotype recording for ELP traits in pig and chicken

Large-scale phenotype recording will be made available for traits related to quality (egg, sperm and meat), egg production, feed efficiency, health and growth.

Identification of methylation lifetime changes in relation to welfare in chicken

Epigenetic variation throughout chicken lifetime will be estimated and will be correlated with behavioural and welfare traits phenotypic variation.

The importance of national and regional dimensions on the societal and ethical concerns of genomics innovations

An analysis of national and regional dimensions for the societal and ethical concerns will be delivered, tailored to the context of genomics innovation and animal breeding.

Interviews and focus groups feedbacks about the evaluation of genomics innovations

A report on the results of the interviews and focus groups in four countries will be made available.

Outreach, Dissemination and Training Plan (ODTP)

ODTP will be submitted at M6 and will be regularly updated in the course of the project depending on the project progress, newly available opportunities for communication and dissemination activities.

Pubblicazioni

Influence of early rearing system on later performance of commercial laying hens

Autori: Q. Berger, N. Bedere, P. Le-Roy, S. Lagarrigue, T. Burlot, T. Zerjal
Pubblicato in: Book of abstracts of 74th European Federation of Animal Science Annual Meeting, Numero August 2023, 2023
Editore: Proceedings EAAP https://doi.org/10.3920/978-90-8686-936-7

Genetic architecture of the persistency of production, quality, and efficiency traits in laying hens

811. Estimating vertical path coefficients of transmission of non-genetic inherited effects from a similarity matrix

Autori: I. David, C. Larzul, A. Ricard
Pubblicato in: Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP), 2023
Editore: Wageningen Academic Publishers
DOI: 10.3920/978-90-8686-940-4_811

Gene Polymorphism Frequencies in Krskopolje Pig Breed

Autori: K. Poklukar, M. Čandek-Potokar, N. Batorek Lukač, MJ. Mercat, D. Picard Druet, M. Škrlep
Pubblicato in: Book of abstracts of the 14th International Symposium Modern Trends in Livestock Production, Numero October 2023, 2023, ISBN 978-86-82431-80-0
Editore: Proceedings of the 14th International Symposium Modern Trends in Livestock Production

Growth potential of Krškopolje pigs in different production systems.

Autori: BATOREK LUKAČ, Nina, ČANDEK-POTOKAR, Marjeta
Pubblicato in: Book of abstracts of the XIth International Symposium on Mediterranean Pig, Numero October 11-13, 2022, 2022, Pagina/e 43-44, ISBN 978-953-8276-35-4
Editore: University of Zagreb

The effect of PRKAG3 and RYR1 genes on meat quality traits in the local Krskopolje pig breed

Using functional annotation and individual omics in genomic prediction

Autori: M. P. L. Calus, B. C. Perez, J. de Vos, O. Madsen, L. Ayres, H. Bovenhuis, M. Ballester, MJ. Mercat, M. C. A. M. Bink
Pubblicato in: Book of abstracts of 39th International Society for Animal Genetics Conference, Numero July 2023, 2023, Pagina/e 45
Editore: ISAG

The effect of low protein diet on adipose tissue transcriptome in Krškopolje pig breed

Autori: K. Poklukar, M. Čandek-Potokar, N. Batorek Lukač, M. Vrecl, G. Fazarinc, M. Škrlep
Pubblicato in: Book of abstracts of the 1st Regional Meeting of The European Federation of Animal Science, Numero April 2024, 2024
Editore: 1st Regional Meeting of The European Federation of Animal Science

Transgenerational response to endocrine disruptor: phenotypic, genotypic and epigenotypic analyses in quail

Autori: S. Rousse, S. Leroux, D. Gourichon, L. Calandreau, C. Cerutti, G. Devailly, T. Zerjal, S. Lagarrigue, F. Pitel, S. E. Eynard
Pubblicato in: Book of abstracts of the Environmental and Agronomical Genomics Symposium, Numero February 2024, 2024
Editore: France Genomic

Assessing multiphase feeding sequencing plan designed for fatty type pigs in indoor and outdoor heavy pig production systems by modeling: an example of Krškopolje pig.

Autori: BATOREK LUKAČ, Nina, ŠKRLEP, Martin, POKLUKAR ŽNIDARŠIČ, Klavdija, MILLET, Sam, ČANDEK-POTOKAR, Marjeta.
Pubblicato in: Book of abstracts of the 7th EAAP International Symposium on Energy and Protein Metobolism and Nutrition (ISEP), Numero September 12-15, 2022, 2022
Editore: EAAP

Stakeholders’ perception of the local breeds’ sector in six European countries - a survey by the GEroNIMO project

Autori: Marie-José MERCAT, Andreia AMARAL, Riccardo BOZZI, Marjeta ČANDEK-POTOKAR, Pedro FERNANDES, Jetsabell GUTIERREZ VALLEJOS, Danijel KAROLYI, Denis LALOë, Zoran LUKOVIć, Gwendal RESTOUX, António VICENTE, Virginia RIBEIRO, Tamara RODRIGUEZ SILVA, Romuald ROUGER, Dubravko ŠKORPUT, Martin ŠKRLEP
Pubblicato in: Book of abstracts of the XIth International Symposium on the Mediterranean pig, Numero October 11-13, 2022, 2022, Pagina/e 87-88, ISBN 978-953-8276-35-4
Editore: UNIZG

GEroNIMO (Genome and Epigenome eNabled breedIng in MOnogastrics)

Autori: S. Lagarrigue, F. Pitel, T. Zerjal for the GEroNIMO consortium
Pubblicato in: Book of abstracts of 74th European Federation of Animal Science Annual Meeting, Numero August 2023, 2023
Editore: Proceedings EAAP https://doi.org/10.3920/978-90-8686-936-7

A IncRNA gene-enriched atlas for GRCg7b chicken genome gathering EMBL-EBI EnsembI, NCBI-RefSeq and two FAANG databases

Autori: F. Degalez, M. Charles, S. Foissac, H. Zhou, D. Guan, L. Fang, C. Klopp, C. Alain, L. Lagoutte, B. Lebez, F. Lecerf, B. Vourch, T. Zerjal, F. Pitel, S. Lagarrigue
Pubblicato in: Book of abstracts of 74th European Federation of Animal Sciences Annual Meeting, Numero August 2023, 2023
Editore: Proceedings EAAP https://doi.org/10.3920/978-90-8686-936-7

Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology

Autori: S. E. Eynard, C. Donnadieu, L. Flatres-Grall, C. Iampietro, S. Lagarrigue, S. Leroux, J. Lledo, J. Riquet, B. Servin, C. Vandecasteele, T. Zerjal, F. Pitel
Pubblicato in: Book of abstracts of Environmental and Agronomical Genomics Symposium, Numero February 2024, 2024
Editore: EAGS

Banija spotted pig – from science to practise

Autori: Zoran Luković, Dubravko Škorput, Krešimir Salajpal, Sven Menčik, Danijel Karolyi
Pubblicato in: Book of abstracts of the XIth International Symposium on the Mediterranean pig, Numero October 11-13, 2022, 2022, Pagina/e 51-52, ISBN 978-953-8276-35-4
Editore: UNIZG

On the genetic basis of porcine semen traits: a large-scale genome-wide study on a synthetic line

Autori: P. Sá, R. M. Godinho, M. Gòdia, C. A. Sevillano, B. Harlizius, O. Madsen, H. Bovenhuis
Pubblicato in: Book of abstracts of 39th International Society for Animal Genetics Conference, Numero July 2023, 2023, Pagina/e 18
Editore: ISAG

Comparison of haematological profiles between Alentejano and commercial (LWxLR) pigs

Autori: Luísa Mateus, Graça Ferreira Dias, Maria Salomé, Gonçalves, Pamela Valente, Elisa Bettencourt, Luís Telo da Gama, Carlos Bettencourt, Andreia J. Amaral
Pubblicato in: Book of abstracts of the CIISA Congress 2022 Lisbon, Portugal)., Numero November 2022, 2022, Pagina/e 150
Editore: CIISA

The evolution of epigenetics across multiple generations

Autori: S. E. Eynard, C. Donnadieu, L. Flatres-Grall, C. Iampietro, S. Lagarrigue, S. Leroux, J. Lledo, J. Riquet, B. Servin, C. Vandecasteele, T. Zerjal, F. Pitel
Pubblicato in: Book of abstracts of Epigenetic Trangenerational Inheritance Meeting, Numero September 2023, 2023
Editore: Epigenetic Trangenerational Inheritance Meeting

A IncRNA gene-enriched atlas for GRCg7b chicken genome & its functional annotation across 47 tissues

Autori: F. Degalez, M. Charles, S. Foissac, H. Zhou, D. Guan, L. Fang, C. Klopp, C. Alain, L. Lagoutte, B. Lebez, F. Lecerf, B. Vourch, T. Zerjal, F. Pitel, S. Lagarrigue
Pubblicato in: Book of abstracts of 39th International Society for Animal Genetics Conference, Numero July 2023, 2023, Pagina/e 49
Editore: ISAG

Added value of functional annotation and individual omics in genomic prediction

Autori: M. P. L. Calus
Pubblicato in: AGBT: Agricultural Meeting, Numero April 2024, 2024
Editore: AGBT Ag; DOI not available

Perceptions of stakeholders involved in preserving local breeds - a survey by the GEroNIMO project

Autori: MJ. Mercat, A. Amaral, R. Bozzi, M. Candek-Potokar, P. Fernandes, J. Gutierrez Vallejos, D. Karolyi, D. Laloë, Z. Lukovic, H. Lenoir, G. Restoux, A. Vicente, V. Ribeiro, T. Rodriguez Silva, R. Rouger, D. Skroput, M. Skrlep
Pubblicato in: Journées de la Recherche Porcine, Numero January 2023, 2023, ISSN 2772-283X
Editore: INRAE, IFIP
DOI: 10.1016/j.anscrio.2023.06.089

Turopolje Pig: Between Conservation and Sustainability

Autori: D. Skorput, A. Kaic, M. Spehar, D. Karolyi, Z. Lukovic
Pubblicato in: Sustainability, 2024, ISSN 2071-1050
Editore: MDPI Open Access Publishing
DOI: 10.3390/su16051786

Enriched atlas of IncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues

Autori: F. Degalez, M. Charles, S. Foissac, H. Zhou, D. Guan, L. Fang, C. Klopp, C. Allain, L. Lagoutte, F. Lecerf, H. Acloque, E. Giuffra, F. Pitel, S. Lagarrigue
Pubblicato in: Scientific Reports, 2024, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-024-56705-y

Simulation of dual-purpose chicken breeding programs implementing gene editing

Autori: E. Y. S. Chuang, R. Wellmann, F. L. B. Meijboom, J. Tetens, J. Bennewitz
Pubblicato in: Genetics Selection Evolution, 2024, ISSN 0999-193X
Editore: BioMed Central
DOI: 10.1186/s12711-023-00874-3

An improved transmissibility model to detect transgenerational transmitted environmental effects

Autori: I. David, A. Ricard
Pubblicato in: Genetics Selection Evolution, 2023, ISSN 0999-193X
Editore: BioMed Central
DOI: 10.1186/s12711-023-00833-y

Growth potential of Krškopolje pigs in different production systems.

Autori: BATOREK LUKAČ, Nina, ČANDEK-POTOKAR, Marjeta
Pubblicato in: Book of abstracts. XIth International Symposium on Mediterranean Pig, Numero 5, 2022, ISBN 978-953-8276-35-4
Editore: University of Zagreb, Faculty of agriculture

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