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Epidemic intelligence to minimize 2019-nCoV’s public health, economic and social impact in Europe

Deliverables

MetaData

Metadata describing the research data to facilitate re-use by other consortia and groups (attached to D1.3 in terms of the timeline with the same target users) after review by the steering committee Time of delivery - Update within 30 days of new data collection

Algorithms for nowcasting and short-term forecasting of 2019-nCoV epidemic

Software deliverable: Algorithms for nowcasting and short-term forecasting of 2019-nCoV epidemic (M3, target users: public health agencies, scientific community)

2019-nCoV data repository

Data repository containing all research data generated during the project (starting M1 with regular updates, target users: other EpiPose WP researchers, scientific community, PH authorities) for internal use as well as for sharing after review by the steering committee (see WP6). Updates within 30 days of new data collection

Real-time epidemic risk assessment tool

Real-time epidemic risk assessment tool (M1, target users: public health agencies, scientific community)

Updated Data lake with survey, platform and social media data provided

Updated Data lake with survey, platform and social media data provided

Report on impact of information exposure on collective attention

Report on impact of information exposure on collective attention (month 12)

Inventory of results

Inventory of results (M 1-36 bi-monthly)

Improved methods and estimates of 2019-nCoV epidemic

Improved methods and estimates of 2019-nCoV epidemic. We will provide robust methods that are insensitive to/or can identify occasional outliers, suffer little bias and are most informative for public health decision making. Target users: public health agencies, scientific community)

Report summarising spread of 2019-nCoV in Europe from models in O3.1

Report summarising spread of 2019-nCoV in Europe from models in O3.1.

Dissemination plan

Dissemination plan to implement Task 6.1 (dissemination of methods and results) 6.2 (outreach to national and international stakeholders) and 6.3 (Communication via social media, newspapers etc)

Report summarizing real time updates under task 5.1 and 5.2

report summarizing real time updates under task 5.1 (disease burden and associated resource use) and 5.2 (macro-economic impact)

Report summarising dissemination activities year 1

Report summarising dissemination activities year 1

Report summarizing task 5.1 and 5.2 activities

report summarizing task 5.1(disease burden and associated resource use) and 5.2 (macro-economic impact)

Report summarising impact of initial set of interventions

Report summarising impact of initial set of interventions

Interim activity report

Interim activity report

Advice to public health

Advice to PH authorities in and outside the consortium on what data to collect (e.g. advisory documents, contribution to working groups) (M1 with regular updates, target users: other EpiPose WP researchers, scientific community, PH authorities)

modules on social contact patterns and risk behaviours to be integrated within participating Influenzanet partners

development of modules on social contact patterns and risk behaviours to be integrated within participating Influenzanet partners

Project website

Public website available to release updates of project outputs to lay public and press, when and where deemed appropriate by the SC.

Publications

Occurrence and transmission potential of asymptomatic and presymptomatic SARS-CoV-2 infections: A living systematic review and meta-analysis

Author(s): Diana Buitrago-Garcia, Dianne Egli-Gany, Michel J. Counotte, Stefanie Hossmann, Hira Imeri, Aziz Mert Ipekci, Georgia Salanti, Nicola Low
Published in: PLOS Medicine, Issue 17/9, 2020, Page(s) e1003346, ISSN 1549-1676
DOI: 10.1371/journal.pmed.1003346

The impact of local and national restrictions in response to COVID-19 on social contacts in England: a longitudinal natural experiment

Author(s): Christopher I. Jarvis, Amy Gimma, Kevin van Zandvoort, Kerry L. M. Wong, W. John Edmunds
Published in: BMC Medicine, Issue 19/1, 2021, ISSN 1741-7015
DOI: 10.1186/s12916-021-01924-7

Estimation of SARS-CoV-2 mortality during the early stages of an epidemic: A modeling study in Hubei, China, and six regions in Europe

Author(s): Anthony Hauser, Michel J. Counotte, Charles C. Margossian, Garyfallos Konstantinoudis, Nicola Low, Christian L. Althaus, Julien Riou
Published in: PLOS Medicine, Issue 17/7, 2020, Page(s) e1003189, ISSN 1549-1676
DOI: 10.1371/journal.pmed.1003189

Impact of physical distancing measures against COVID-19 on contacts and mixing patterns: repeated cross-sectional surveys, the Netherlands, 2016–17, April 2020 and June 2020

Author(s): Jantien A Backer, Liesbeth Mollema, Eric RA Vos, Don Klinkenberg, Fiona RM van der Klis, Hester E de Melker, Susan van den Hof, Jacco Wallinga
Published in: Eurosurveillance, Issue 26/8, 2021, ISSN 1560-7917
DOI: 10.2807/1560-7917.es.2021.26.8.2000994

Global, regional, and national estimates of the population at increased risk of severe COVID-19 due to underlying health conditions in 2020: a modelling study

Author(s): Andrew Clark, Mark Jit, Charlotte Warren-Gash, Bruce Guthrie, Harry H X Wang, Stewart W Mercer, Colin Sanderson, Martin McKee, Christopher Troeger, Kanyin L Ong, Francesco Checchi, Pablo Perel, Sarah Joseph, Hamish P Gibbs, Amitava Banerjee, Rosalind M Eggo, Emily S Nightingale, Kathleen O'Reilly, Thibaut Jombart, W John Edmunds, Alicia Rosello, Fiona Yueqian Sun, Katherine E Atkins, Nikos I Bosse
Published in: The Lancet Global Health, Issue 8/8, 2020, Page(s) e1003-e1017, ISSN 2214-109X
DOI: 10.1016/s2214-109x(20)30264-3

Quantifying the impact of physical distance measures on the transmission of COVID-19 in the UK

Author(s): Christopher I. Jarvis, Kevin Van Zandvoort, Amy Gimma, Kiesha Prem, Petra Klepac, G. James Rubin, W. John Edmunds
Published in: BMC Medicine, Issue 18/1, 2020, ISSN 1741-7015
DOI: 10.1186/s12916-020-01597-8

Time between Symptom Onset, Hospitalisation and Recovery or Death: Statistical Analysis of Belgian COVID-19 Patients

Author(s): Christel Faes, Steven Abrams, Dominique Van Beckhoven, Geert Meyfroidt, Erika Vlieghe, Niel Hens
Published in: International Journal of Environmental Research and Public Health, Issue 17/20, 2020, Page(s) 7560, ISSN 1660-4601
DOI: 10.3390/ijerph17207560

Evaluation of home detection algorithms on mobile phone data using individual-level ground truth

Author(s): Luca Pappalardo, Leo Ferres, Manuel Sacasa, Ciro Cattuto, Loreto Bravo
Published in: EPJ Data Science, Issue 10/1, 2021, ISSN 2193-1127
DOI: 10.1140/epjds/s13688-021-00284-9

Estimating the generation interval for coronavirus disease (COVID-19) based on symptom onset data, March 2020

Author(s): Tapiwa Ganyani, Cécile Kremer, Dongxuan Chen, Andrea Torneri, Christel Faes, Jacco Wallinga, Niel Hens
Published in: Eurosurveillance, Issue 25/17, 2020, ISSN 1560-7917
DOI: 10.2807/1560-7917.es.2020.25.17.2000257

Estimating the effect of social inequalities on the mitigation of COVID-19 across communities in Santiago de Chile

Author(s): Nicolò Gozzi, Michele Tizzoni, Matteo Chinazzi, Leo Ferres, Alessandro Vespignani, Nicola Perra
Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
DOI: 10.1038/s41467-021-22601-6

A data-driven metapopulation model for the Belgian COVID-19 epidemic: assessing the impact of lockdown and exit strategies

Author(s): Pietro Coletti, Pieter Libin, Oana Petrof, Lander Willem, Steven Abrams, Sereina A. Herzog, Christel Faes, Elise Kuylen, James Wambua, Philippe Beutels, Niel Hens
Published in: BMC Infectious Diseases, Issue 21/1, 2021, ISSN 1471-2334
DOI: 10.1186/s12879-021-06092-w

A prospect on the use of antiviral drugs to control local outbreaks of COVID-19

Author(s): Andrea Torneri, Pieter Libin, Joris Vanderlocht, Anne-Mieke Vandamme, Johan Neyts, Niel Hens
Published in: BMC Medicine, Issue 18/1, 2020, ISSN 1741-7015
DOI: 10.1186/s12916-020-01636-4

The impact of Covid-19, associated behaviours and policies on the UK economy: A computable general equilibrium model

Author(s): Marcus R. Keogh-Brown, Henning Tarp Jensen, W. John Edmunds, Richard D. Smith
Published in: SSM - Population Health, Issue 12, 2020, Page(s) 100651, ISSN 2352-8273
DOI: 10.1016/j.ssmph.2020.100651

Ceci n'est pas un lit. Base capacity healthcare matters in a pandemic

Author(s): Philippe Beutels, Frederik Verelst
Published in: The Lancet Regional Health - Europe, Issue 2, 2021, Page(s) 100033, ISSN 2666-7762
DOI: 10.1016/j.lanepe.2021.100033

Can COVID-19 symptoms as reported in a large-scale online survey be used to optimise spatial predictions of COVID-19 incidence risk in Belgium?

Author(s): Thomas Neyens, Christel Faes, Maren Vranckx, Koen Pepermans, Niel Hens, Pierre Van Damme, Geert Molenberghs, Jan Aerts, Philippe Beutels
Published in: Spatial and Spatio-temporal Epidemiology, Issue 35, 2020, Page(s) 100379, ISSN 1877-5845
DOI: 10.1016/j.sste.2020.100379

Dynamic interventions to control COVID-19 pandemic: a multivariate prediction modelling study comparing 16 worldwide countries

Author(s): Rajiv Chowdhury, Kevin Heng, Md Shajedur Rahman Shawon, Gabriel Goh, Daisy Okonofua, Carolina Ochoa-Rosales, Valentina Gonzalez-Jaramillo, Abbas Bhuiya, Daniel Reidpath, Shamini Prathapan, Sara Shahzad, Christian L. Althaus, Nathalia Gonzalez-Jaramillo, Oscar H. Franco
Published in: European Journal of Epidemiology, Issue 35/5, 2020, Page(s) 389-399, ISSN 0393-2990
DOI: 10.1007/s10654-020-00649-w

The impact of non-pharmaceutical interventions on SARS-CoV-2 transmission across 130 countries and territories

Author(s): Yang Liu, Christian Morgenstern, James Kelly, Rachel Lowe, Mark Jit
Published in: BMC Medicine, Issue 19/1, 2021, ISSN 1741-7015
DOI: 10.1186/s12916-020-01872-8

Estimating number of cases and spread of coronavirus disease (COVID-19) using critical care admissions, United Kingdom, February to March 2020

Author(s): Mark Jit, Thibaut Jombart, Emily S Nightingale, Akira Endo, Sam Abbott, W John Edmunds
Published in: Eurosurveillance, Issue 25/18, 2020, ISSN 1560-7917
DOI: 10.2807/1560-7917.es.2020.25.18.2000632

The potential health and economic value of SARS-CoV-2 vaccination alongside physical distancing in the UK: a transmission model-based future scenario analysis and economic evaluation

Author(s): Frank G Sandmann, Nicholas G Davies, Anna Vassall, W John Edmunds, Mark Jit, Fiona Yueqian Sun, C Julian Villabona-Arenas, Emily S Nightingale, Alicia Showering, Gwenan M Knight, Katharine Sherratt, Yang Liu, Kaja Abbas, Sebastian Funk, Akira Endo, Joel Hellewell, Alicia Rosello, Rachel Lowe, Matthew Quaife, Amy Gimma, Oliver Brady, Jack Williams, Simon R Procter, Rosalind M Eggo, Yung-Wai Desmond
Published in: The Lancet Infectious Diseases, Issue 21/7, 2021, Page(s) 962-974, ISSN 1473-3099
DOI: 10.1016/s1473-3099(21)00079-7

CoMix: comparing mixing patterns in the Belgian population during and after lockdown

Author(s): Pietro Coletti, James Wambua, Amy Gimma, Lander Willem, Sarah Vercruysse, Bieke Vanhoutte, Christopher I. Jarvis, Kevin Van Zandvoort, John Edmunds, Philippe Beutels, Niel Hens
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
DOI: 10.1038/s41598-020-78540-7

COVID-19 outbreak response, a dataset to assess mobility changes in Italy following national lockdown

Author(s): Emanuele Pepe, Paolo Bajardi, Laetitia Gauvin, Filippo Privitera, Brennan Lake, Ciro Cattuto, Michele Tizzoni
Published in: Scientific Data, Issue 7/1, 2020, ISSN 2052-4463
DOI: 10.1038/s41597-020-00575-2

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England

Author(s): Nicholas G. Davies, Sam Abbott, Rosanna C. Barnard, Christopher I. Jarvis, Adam J. Kucharski, James D. Munday, Carl A. B. Pearson, Timothy W. Russell, Damien C. Tully, Alex D. Washburne, Tom Wenseleers, Amy Gimma, William Waites, Kerry L. M. Wong, Kevin van Zandvoort, Justin D. Silverman, Karla Diaz-Ordaz, Ruth Keogh, Rosalind M. Eggo, Sebastian Funk, Mark Jit, Katherine E. Atkins, W. John Edmunds
Published in: Science, Issue 372/6538, 2021, Page(s) eabg3055, ISSN 0036-8075
DOI: 10.1126/science.abg3055

Digital proximity tracing on empirical contact networks for pandemic control

Author(s): G. Cencetti, G. Santin, A. Longa, E. Pigani, A. Barrat, C. Cattuto, S. Lehmann, M. Salathé, B. Lepri
Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
DOI: 10.1038/s41467-021-21809-w

Collective Response to Media Coverage of the COVID-19 Pandemic on Reddit and Wikipedia: Mixed-Methods Analysis

Author(s): Nicolò Gozzi, Michele Tizzani, Michele Starnini, Fabio Ciulla, Daniela Paolotti, André Panisson, Nicola Perra
Published in: Journal of Medical Internet Research, Issue 22/10, 2020, Page(s) e21597, ISSN 1438-8871
DOI: 10.2196/21597

Indications for healthcare surge capacity in European countries facing an exponential increase in coronavirus disease (COVID-19) cases, March 2020

Author(s): Frederik Verelst, Elise Kuylen, Philippe Beutels
Published in: Eurosurveillance, Issue 25/13, 2020, ISSN 1560-7917
DOI: 10.2807/1560-7917.es.2020.25.13.2000323

Early evidence of effectiveness of digital contact tracing for SARS-CoV-2 in Switzerland

Author(s): Marcel Salath, Christian Althaus, Nanina Anderegg, Daniele Antonioli, Tala Ballouz, Edouard Bugnon, Srdjan apkun, Dennis Jackson, Sang-Il Kim, Jim Larus, Nicola Low, Wouter Lueks, Dominik Menges, Cdric Moullet, Mathias Payer, Julien Riou, Theresa Stadler, Carmela Troncoso, Effy Vayena, Viktor von Wyl
Published in: Swiss Medical Weekly, 2020, ISSN 1424-3997
DOI: 10.4414/smw.2020.20457

Modelling the early phase of the Belgian COVID-19 epidemic using a stochastic compartmental model and studying its implied future trajectories

Author(s): Steven Abrams, James Wambua, Eva Santermans, Lander Willem, Elise Kuylen, Pietro Coletti, Pieter Libin, Christel Faes, Oana Petrof, Sereina A. Herzog, Philippe Beutels, Niel Hens
Published in: Epidemics, Issue 35, 2021, Page(s) 100449, ISSN 1755-4365
DOI: 10.1016/j.epidem.2021.100449

The contribution of asymptomatic SARS-CoV-2 infections to transmission on the Diamond Princess cruise ship

Author(s): Jon C Emery, Timothy W Russell, Yang Liu, Joel Hellewell, Carl AB Pearson, Katherine E Atkins, Petra Klepac, Akira Endo, Christopher I Jarvis, Nicholas G Davies, Eleanor M Rees, Sophie R Meakin, Alicia Rosello, Kevin van Zandvoort, James D Munday, W John Edmunds, Thibaut Jombart, Megan Auzenbergs, Emily S Nightingale, Mark Jit, Sam Abbott, David Simons, Nikos I Bosse, Quentin J Leclerc, Simon R Pr
Published in: eLife, Issue 9, 2020, ISSN 2050-084X
DOI: 10.7554/elife.58699

Effects of non-pharmaceutical interventions on COVID-19 cases, deaths, and demand for hospital services in the UK: a modelling study

Author(s): Nicholas G Davies, Adam J Kucharski, Rosalind M Eggo, Amy Gimma, W John Edmunds, Thibaut Jombart, Kathleen O'Reilly, Akira Endo, Joel Hellewell, Emily S Nightingale, Billy J Quilty, Christopher I Jarvis, Timothy W Russell, Petra Klepac, Nikos I Bosse, Sebastian Funk, Sam Abbott, Graham F Medley, Hamish Gibbs, Carl A B Pearson, Stefan Flasche, Mark Jit, Samuel Clifford, Kiesha Prem, Charlie Diamond
Published in: The Lancet Public Health, Issue 5/7, 2020, Page(s) e375-e385, ISSN 2468-2667
DOI: 10.1016/s2468-2667(20)30133-x

Authors’ response: Estimating the generation interval for COVID-19 based on symptom onset data

Author(s): Cécile Kremer, Tapiwa Ganyani, Dongxuan Chen, Andrea Torneri, Christel Faes, Jacco Wallinga, Niel Hens
Published in: Eurosurveillance, Issue 25/29, 2020, ISSN 1560-7917
DOI: 10.2807/1560-7917.es.2020.25.29.2001269

Changing travel patterns in China during the early stages of the COVID-19 pandemic

Author(s): Hamish Gibbs, Yang Liu, Carl A. B. Pearson, Christopher I. Jarvis, Chris Grundy, Billy J. Quilty, Charlie Diamond, Rosalind M. Eggo
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
DOI: 10.1038/s41467-020-18783-0

Effect of internationally imported cases on internal spread of COVID-19: a mathematical modelling study

Author(s): Timothy W Russell, Joseph T Wu, Sam Clifford, W John Edmunds, Adam J Kucharski, Mark Jit
Published in: The Lancet Public Health, Issue 6/1, 2021, Page(s) e12-e20, ISSN 2468-2667
DOI: 10.1016/s2468-2667(20)30263-2

SOCRATES: An online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19

Author(s): Pietro Coletti; Philippe Beutels; Philippe Beutels; Lander Willem; Niel Hens; Niel Hens; Sebastian Funk; Thang Van Hoang
Published in: BMC Research Notes, Issue 1, 2020, ISSN 1756-0500
DOI: 10.1101/2020.03.03.20030627

Association of tiered restrictions and a second lockdown with COVID-19 deaths and hospital admissions in England: a modelling study

Author(s): Nicholas G Davies, Rosanna C Barnard, Christopher I Jarvis, Timothy W Russell, Malcolm G Semple, Mark Jit, W John Edmunds
Published in: The Lancet Infectious Diseases, Issue 21/4, 2021, Page(s) 482-492, ISSN 1473-3099
DOI: 10.1016/s1473-3099(20)30984-1

The impact of contact tracing and household bubbles on deconfinement strategies for COVID-19

Author(s): Lander Willem, Steven Abrams, Pieter J. K. Libin, Pietro Coletti, Elise Kuylen, Oana Petrof, Signe Møgelmose, James Wambua, Sereina A. Herzog, Christel Faes, Philippe Beutels, Niel Hens
Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
DOI: 10.1038/s41467-021-21747-7

Effect of manual and digital contact tracing on COVID-19 outbreaks: a study on empirical contact data

Author(s): A. Barrat, C. Cattuto, M. Kivelä, S. Lehmann, J. Saramäki
Published in: Journal of The Royal Society Interface, Issue 18/178, 2021, ISSN 1742-5662
DOI: 10.1098/rsif.2020.1000

The impact of COVID-19 control measures on social contacts and transmission in Kenyan informal settlements

Author(s): Matthew Quaife, Kevin van Zandvoort, Amy Gimma, Kashvi Shah, Nicky McCreesh, Kiesha Prem, Edwine Barasa, Daniel Mwanga, Beth Kangwana, Jessie Pinchoff, W. John Edmunds, Christopher I. Jarvis, Karen Austrian
Published in: BMC Medicine, Issue 18/1, 2020, ISSN 1741-7015
DOI: 10.1186/s12916-020-01779-4

Outbreaks of publications about emerging infectious diseases: the case of SARS-CoV-2 and Zika virus

Author(s): Aziz Mert Ipekci, Diana Buitrago-Garcia, Kaspar Walter Meili, Fabienne Krauer, Nirmala Prajapati, Shabnam Thapa, Lea Wildisen, Lucia Araujo-Chaveron, Lukas Baumann, Sanam Shah, Tessa Whiteley, Gonzalo Solís-García, Foteini Tsotra, Ivan Zhelyazkov, Hira Imeri, Nicola Low, Michel Jacques Counotte
Published in: BMC Medical Research Methodology, Issue 21/1, 2021, ISSN 1471-2288
DOI: 10.1186/s12874-021-01244-7

A linear Mixed Model to Estimate COVID-19-induced Excess Mortality

Author(s): Johan Verbeeck, Christel Faes, Thomas Neyens, Niel Hens, Geert Verbeke, Patrick Deboosere, Geert Molenberghs
Published in: medRxiv, 2021, ISSN 1476-4687
DOI: 10.1101/2021.05.10.21256942

Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research

Author(s): Franziska Hufsky * , Kevin Lamkiewicz ORCID logo , Alexandre Almeida , Abdel Aouacheria , Cecilia Arighi , Alex Bateman , Jan Baumbach , Niko Beerenwinkel , Christian Brandt , Marco Cacciabue , Sara Chuguransky , Oliver Drechsel , Robert D. Finn , Adrian Fritz , Stephan Fuchs , Georges Hattab , Anne-Christin Hauschild , Dominik Heider , Marie Hoffmann , Martin Hölzer ORCID logo , Stefan Hoops , L
Published in: Preprints, 2021, ISSN 2310-287X
DOI: 10.20944/preprints202005.0376.v1

The effect of international travel restrictions on internal spread of COVID-19

Author(s): Timothy W Russell, Joseph T Wu, Sam Clifford, CMMID COVID-19 working group, W John Edmunds, Adam J. Kucharski, Mark Jit
Published in: medRxiv, 2021, ISSN 1476-4687
DOI: 10.1101/2020.07.12.20152298

On the timing of interventions to preserve hospital capacity: lessons to be learned from the Belgian SARS-CoV-2 pandemic

Author(s): Niel Hens, Christel Faes, Marius Gilbert
Published in: medRxiv, 2021, ISSN 1476-4687
DOI: 10.1101/2020.12.18.20248450

CoMix: Changes in social contacts as measured by the contact survey during the COVID-19 pandemic in England between March 2020 and March 2021

Author(s): Amy Gimma, James D Munday, Kerry LM Wong, Pietro Coletti, Kevin van Zandvoort, Kiesha Prem, CMMID COVID-19 working group, Petra Klepac, G. James Rubin, Sebastian Funk, W John Edmunds, Christopher I Jarvis
Published in: medRxiv, 2021, ISSN 1476-4687
DOI: 10.1101/2021.05.28.21257973

Belgian COVID-19 Mortality, Excess Deaths, Number of Deaths per Million, and Infection Fatality Rates (9 March — 28 June 2020)

Author(s): Geert Molenberghs, Christel Faes, Johan Verbeeck, Patrick Deboosere, Steven Abrams, Lander Willem, Jan Aerts, Heidi Theeten, Brecht Devleesschauwer, Natalia Bustos Sierra, Françoise Renard, Sereina Herzog, Patrick Lusyne, Johan Van der Heyden, Herman Van Oyen, Pierre Van Damme, Niel Hens
Published in: medRxiv, 2021, ISSN 1476-4687
DOI: 10.1101/2020.06.20.20136234

Quantifying superspreading for COVID-19 using Poisson mixture distributions

Author(s): Cécile Kremer, Andrea Torneri, Sien Boesmans, Hanne Meuwissen, Selina Verdonschot, Koen Vanden Driessche, Christian L. Althaus, Christel Faes, Niel Hens
Published in: medRxiv, 2021, ISSN 1476-4687
DOI: 10.1101/2020.11.27.20239657

Estimating the impact of reopening schools on the reproduction number of SARS-CoV-2 in England, using weekly contact survey data

Author(s): James D Munday, Christopher I Jarvis, Amy Gimma, Kerry LM Wong, Kevin van Zandvoort, CMMID COVID-19 Working Group, Sebastian Funk, W. John Edmunds
Published in: medRxiv, 2021, ISSN 1476-4687
DOI: 10.1101/2021.03.06.21252964

A tale of two variants: Spread of SARS-CoV-2 variants Alpha in Geneva, Switzerland, and Beta in South Africa

Author(s): Christian L. Althaus, Stephanie Baggio, Martina L. Reichmuth, Emma B. Hodcroft, Julien Riou, Richard A. Neher, Frédérique Jacquerioz, Hervé Spechbach, Julien Salamun, Pauline Vetter, Carolyn Williamson, Nei-yuan Hsiao, Wolfgang Preiser, Mary-Ann Davies, Richard J. Lessells, Tulio de Olivera, Laurent Kaiser, Isabella Eckerle
Published in: medRxiv, 2021, ISSN 1476-4687
DOI: 10.1101/2021.06.10.21258468

Datasets

CoMix social contact data (Netherlands)

Author(s): Backer, Jantien; Bogaardt, Laurens; Wallinga, Jacco
Published in: Zenodo

CoMix social contact data (Italy)

Author(s): Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I
Published in: Zenodo

CoMix social contact data (Denmark)

Author(s): Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I
Published in: Zenodo

CoMix social contact data (Greece)

Author(s): Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I
Published in: Zenodo

CoMix social contact data (France)

Author(s): Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I
Published in: Zenodo

CoMix social contact data (Poland)

Author(s): Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I
Published in: Zenodo

CoMix social contact data (UK)

Author(s): Gimma, Amy; Wong, Kerry LM; Van Zandvoort, Kevin; Jarvis, Christopher I; Edmunds, W John
Published in: Zenodo

CoMix social contact data (Austria)

Author(s): Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I
Published in: Zenodo

CoMix social contact data (Slovenia)

Author(s): Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I
Published in: Zenodo

CoMix social contact data (Spain)

Author(s): Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I
Published in: Zenodo

CoMix social contact data (Portugal)

Author(s): Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I
Published in: Zenodo

CoMix social contact data (Belgium )

Author(s): Pietro Coletti; James Wambua; Amy Gimma; Lander Willem; Sarah Vercruysse; Bieke Vanhoutte; Christopher I Jarvis; Kevin Van Zandvoort; John Edmunds; Philippe Beutels; Niel Hens
Published in: Zenodo

Software

Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region

Author(s): Yang Liu; Frank G. Sandmann; Rosanna C. Barnard; Carl A.B. Pearson; CMMID Working-19 Working Group; Roberta Pastore; Richard Pebody; Stefan Flasche; Mark Jit
DOI: oai:zenodo.org:4964269; 10.5281/zenodo.4964269
Publisher: Zenodo

Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region

Author(s): Yang Liu; Frank G. Sandmann; Rosanna C. Barnard; Carl A.B. Pearson; CMMID Working-19 Working Group; Roberta Pastore; Richard Pebody; Stefan Flasche; Mark Jit
DOI: oai:zenodo.org:4964149; 10.5281/zenodo.4964149
Publisher: Zenodo

Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region

Author(s): Yang Liu; Frank G Sandman; Rosanna C. Barnard; Carl A.B. Pearson; CMMID COVID-19 Working Group; Roberta Pastore; Richard Pebody; Stefan Flasche; Mark Jit
DOI: oai:zenodo.org:4960679; 10.5281/zenodo.4960679
Publisher: Zenodo

Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region

Author(s): Yang Liu; Frank G. Sandmann; Rosanna C. Barnard; Carl A.B. Pearson; CMMID Working-19 Working Group; Roberta Pastore; Richard Pebody; Stefan Flasche; Mark Jit
DOI: oai:zenodo.org:4964285; 10.5281/zenodo.4964285
Publisher: Zenodo