Modern approaches for developing antivirals against SARS-CoV 2

Deliverables

Draft of Data Management Plan

Description of datasets data sharing and archiving

Updated version of Data Management Plan

Project website and communication pack

Project website and promotional tools for workshops and meetings

Consortium secured intranet

This tool will facilitate communication and establish the principles of work within the consortium

Communication and dissemination update

This report will provide an update on the implementation and impact of the communication and dissemination activities

Publications

Natural Hydrogels Support Kidney Organoid Generation and Promote In Vitro Angiogenesis

Author(s): Elena Garreta, Daniel Moya‐Rull, Andrés Marco, Gaia Amato, Asier Ullate‐Agote, Carolina Tarantino, Maria Gallo, David Esporrín‐Ubieto, Alberto Centeno, Amaia Vilas‐Zornoza, Rafael Mestre, María Kalil, Izar Gorroñogoitia, Ane Miren Zaldua, Samuel Sanchez, Laura Izquierdo Reyes, María Eugenia Fernández‐Santos, Felipe Prosper, Nuria Montserrat
Published in: Advanced Materials, Issue 36, 2024, ISSN 0935-9648
Publisher: United Nations Industrial Developement Organization
DOI: 10.1002/adma.202400306

Human soluble ACE2 improves the effect of remdesivir in SARS‐CoV‐2 infection

Author(s): Vanessa Monteil, Matheus Dyczynski, Volker M Lauschke, Hyesoo Kwon, Gerald Wirnsberger, Sonia Youhanna, Haibo Zhang, Arthur S Slutsky, Carmen Hurtado del Pozo, Moritz Horn, Nuria Montserrat, Josef M Penninger, Ali Mirazimi
Published in: EMBO Molecular Medicine, Issue 13/1, 2021, Page(s) 13:e13426, ISSN 1757-4676
Publisher: John Wiley & Sons Ltd.
DOI: 10.15252/emmm.202013426

The Short- and Long-Range RNA-RNA Interactome of SARS-CoV-2

Author(s): Omer Ziv, Jonathan Price, Lyudmila Shalamova, Tsveta Kamenova, Ian Goodfellow, Friedemann Weber, Eric A. Miska
Published in: Molecular Cell, Issue 80, 2021, Page(s) 1067-1077.e5, ISSN 1097-2765
Publisher: Cell Press
DOI: 10.1016/j.molcel.2020.11.004

Low-density lipoprotein receptor–related protein 1 (LRP1) as an auxiliary host factor for RNA viruses

Author(s): Stephanie Devignot, Tim Wai Sha, Thomas R Burkard, Patrick Schmerer, Astrid Hagelkruys, Ali Mirazimi, Ulrich Elling, Josef M Penninger, Friedemann Weber
Published in: Life Science Alliance, Issue 6, 2024, Page(s) e202302005, ISSN 2575-1077
Publisher: Rockefeller University Press
DOI: 10.26508/lsa.202302005

The Short- and Long-Range RNA-RNA Interactome of SARS-CoV-2

Author(s): Omer Ziv, Jonathan Price, Lyudmila Shalamova, Tsveta Kamenova, Ian Goodfellow, Friedemann Weber, Eric A. Miska
Published in: Molecular Cell, Issue 80/6, 2020, Page(s) 1067-1077.e5, ISSN 1097-2765
Publisher: Cell Press
DOI: 10.1016/j.molcel.2020.11.004

Low Density Lipoprotein Receptor-Related Protein 1 (LRP1) is a host factor for RNA viruses including SARS-CoV-2

Author(s): Stephanie Devignot, Tim Wai Sha, Thomas Burkard, Patrick Schmerer, Astrid Hagelkruys, Ali Mirazimi, Ulrich Elling, Josef M. Penninger, Friedemann Weber
Published in: BioRxiv, 2022, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory, USA
DOI: 10.1101/2022.02.17.480904

ACE2 is the critical in vivo receptor for SARS-CoV-2 in a novel COVID-19 mouse model with TNF- and IFNγ-driven immunopathology

Author(s): Gawish R, Starkl P, Pimenov L, Hladik A, Lakovits K, Oberndorfer F, Cronin SJ, Ohradanova-Repic A, Wirnsberger G, Agerer B, Endler L, Capraz T, Perthold JW, Cikes D, Koglgruber R, Hagelkruys A, Montserrat N, Mirazimi A, Boon L, Stockinger H, Bergthaler A, Oostenbrink C, Penninger JM, Knapp S.
Published in: Elife, 2022, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.74623

Force-tuned avidity of spike variant-ACE2 interactions viewed on the single-molecule level.

Author(s): Zhu R, Canena D, Sikora M, Klausberger M, Seferovic H, Mehdipour AR, Hain L, Laurent E, Monteil V, Wirnsberger G, Wieneke R, Tampé R, Kienzl NF, Mach L, Mirazimi A, Oh YJ, Penninger JM, Hummer G, Hinterdorfer P.
Published in: Nat Commun., 2022, Page(s) 2022 Dec 24;13(1):7926., ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-022-35641-3

Angiotensin-converting enzyme 2-at the heart of the COVID-19 pandemic

Author(s): Oudit GY, Wang K, Viveiros A, Kellner MJ, Penninger JM.
Published in: Cell, 2023, Page(s) 2023 Mar 2;186(5):906-922., ISSN 1097-4172
Publisher: Elsevier
DOI: 10.1016/j.cell.2023.01.039

Sequential multi-omics analysis identifies clinical phenotypes and predictive biomarkers for long COVID

Author(s): Kaiming Wang, Mobin Khoramjoo, Karthik Srinivasan, Paul M.K. Gordon, Rupasri Mandal, Dana Jackson, Wendy Sligl, Maria B. Grant, Josef M. Penninger, Christoph H. Borchers, David S. Wishart, Vinay Prasad, Gavin Y. Oudit
Published in: Cell Reports Medicine, Issue 4, 2024, Page(s) 101254, ISSN 2666-3791
Publisher: Cell Press
DOI: 10.1016/j.xcrm.2023.101254

Crimean–Congo haemorrhagic fever virus uses LDLR to bind and enter host cells

Author(s): Vanessa M. Monteil, Shane C. Wright, Matheus Dyczynski, Max J. Kellner, Sofia Appelberg, Sebastian W. Platzer, Ahmed Ibrahim, Hyesoo Kwon, Ioannis Pittarokoilis, Mattia Mirandola, Georg Michlits, Stephanie Devignot, Elizabeth Elder, Samir Abdurahman, Sándor Bereczky, Binnur Bagci, Sonia Youhanna, Teodor Aastrup, Volker M. Lauschke, Cristiano Salata, Nazif Elaldi, Friedemann Weber, Nuria Monserrat
Published in: Nature Microbiology, Issue 9, 2024, Page(s) 1499-1512, ISSN 2058-5276
Publisher: Nature Portfolio
DOI: 10.1038/s41564-024-01672-3

Identification of lectin receptors for conserved SARS-CoV-2 glycosylation sites

Author(s): Hoffmann D, Mereiter S, Jin Oh Y, Monteil V, Elder E, Zhu R, Canena D, Hain L, Laurent E, Grünwald-Gruber C, Klausberger M, Jonsson G, Kellner MJ, Novatchkova M, Ticevic M, Chabloz A, Wirnsberger G, Hagelkruys A, Altmann F, Mach L, Stadlmann J, Oostenbrink C, Mirazimi A, Hinterdorfer P, Penninger JM.
Published in: EMBO Journal, 2021, ISSN 0261-4189
Publisher: Nature Publishing Group
DOI: 10.15252/embj.2021108375

Assessing kidney development and disease using kidney organoids and CRISPR engineering

Author(s): Safi W; Marco A; Moya D; Prado P; Garreta E; Montserrat N
Published in: Frontiers In Cell And Developmental Biology, 2022, ISSN 2296-634X
Publisher: Frontiers Media Sa
DOI: 10.3389/fcell.2022.948395

Inhalation of ACE2 as a therapeutic target on sex-bias differences in SARS-CoV-2 infection and variant of concern

Author(s): Yu Onodera, Jady Liang, Yuchong Li, Bryan Griffin, Thenuka Thanabalasingam, Cong Lu, JiaYi Zhu, Mingyao Liu, Theo Moraes, Wenhua Zheng, Jasmin Khateeb, Julie Khang, Yongbo Huang, Mirjana Jerkic, Masaki Nakane, Andrew Baker, Beverley Orser, Ya-Wen Chen, Gerald Wirnsberger, Josef M. Penninger, Ori D. Rotstein, Arthur S. Slutsky, Yimin Li, Samira Mubareka, Haibo Zhang
Published in: iScience, Issue 26, 2024, Page(s) 107470, ISSN 2589-0042
Publisher: Cell Press
DOI: 10.1016/j.isci.2023.107470

Protocol for SARS-CoV-2 infection of kidney organoids derived from human pluripotent stem cells

Author(s): Garreta E, Moya-Rull D, Stanifer ML, Monteil V, Prado P, Marco A, Tarantino C, Gallo M, Jonsson G, Hagelkruys A, Mirazimi A, Boulant S, Penninger JM, Montserrat N.
Published in: Star Protocols, 2022, ISSN 2666-1667
Publisher: Cell Press
DOI: 10.1016/j.xpro.2022.101872

Structure-guided glyco-engineering of ACE2 for improved potency as soluble SARS-CoV-2 decoy receptor

Author(s): Capraz T, Kienzl NF, Laurent E, Perthold JW, Föderl-Höbenreich E, Grünwald-Gruber C, Maresch D, Monteil V, Niederhöfer J, Wirnsberger G, Mirazimi A, Zatloukal K, Mach L, Penninger JM, Oostenbrink C, Stadlmann J.
Published in: Elife, 2021, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.73641

Human recombinant soluble ACE2 in severe COVID-19

Author(s): Alexander Zoufaly, Marko Poglitsch, Judith H Aberle, Wolfgang Hoepler, Tamara Seitz, Marianna Traugott, Alexander Grieb, Erich Pawelka, Hermann Laferl, Christoph Wenisch, Stephanie Neuhold, Doris Haider, Karin Stiasny, Andreas Bergthaler, Elisabeth Puchhammer-Stoeckl, Ali Mirazimi, Nuria Montserrat, Haibo Zhang, Arthur S Slutsky, Josef M Penninger
Published in: The Lancet Respiratory Medicine, Issue 8/11, 2020, Page(s) 1154-1158, ISSN 2213-2600
Publisher: Elsevier Limited
DOI: 10.1016/s2213-2600(20)30418-5

A molecularly engineered, broad-spectrum anti-coronavirus lectin inhibits SARS-CoV-2 and MERS-CoV infection in vivo.

Author(s): Chan JF, Oh YJ, Yuan S, Chu H, Yeung ML, Canena D, Chan CC, Poon VK, Chan CC, Zhang AJ, Cai JP, Ye ZW, Wen L, Yuen TT, Chik KK, Shuai H, Wang Y, Hou Y, Luo C, Chan WM, Qin Z, Sit KY, Au WK, Legendre M, Zhu R, Hain L, Seferovic H, Tampé R, To KK, Chan KH, Thomas DG, Klausberger M, Xu C, Moon JJ, Stadlmann J, Penninger JM, Oostenbrink C, Hinterdorfer P, Yuen KY, Markovitz DM.
Published in: Cell Rep Med, 2022, Page(s) 2022 Oct 18;3(10):100774., ISSN 2666-3791
Publisher: Cell Press
DOI: 10.1016/j.xcrm.2022.100774

Identification of CCZ1 as an essential lysosomal trafficking regulator in Marburg and Ebola virus infections

Author(s): Vanessa Monteil, Hyesoo Kwon, Lijo John, Cristiano Salata, Gustav Jonsson, Sabine U. Vorrink, Sofia Appelberg, Sonia Youhanna, Matheus Dyczynski, Alexandra Leopoldi, Nicole Leeb, Jennifer Volz, Astrid Hagelkruys, Max J. Kellner, Stéphanie Devignot, Georg Michlits, Michelle Foong-Sobis, Friedemann Weber, Volker M. Lauschke, Moritz Horn, Heinz Feldmann, Ulrich Elling, Josef M. Penninger, Ali Mirazi
Published in: Nature Communications, Issue 14, 2023, Page(s) 2023 Oct 25;14(1):6785, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-42526-6

Clinical grade ACE2 as a universal agent to block SARS-CoV-2 variants

Author(s): Monteil V, Eaton B, Postnikova E, Murphy M, Braunsfeld B, Crozier I, Kricek F, Niederhöfer J, Schwarzböck A, Breid H, Devignot S, Klingström J, Thålin C, Kellner MJ, Christ W, Havervall S, Mereiter S, Knapp S, Sanchez Jimenez A, Bugajska-Schretter A, Dohnal A, Ruf C, Gugenberger R, Hagelkruys A, Montserrat N, Kozieradzki I, Hasan Ali O, Stadlmann J, Holbrook MR, Schmaljohn C, Oostenbrink C, Sh
Published in: EMBO Mol Med., Issue 17574676, 2022, ISSN 1757-4676
Publisher: John Wiley & Sons Ltd.
DOI: 10.15252/emmm.202115230

Generation of complex bone marrow organoids from human induced pluripotent stem cells

Author(s): Stephanie Frenz-Wiessner, Savannah D. Fairley, Maximilian Buser, Isabel Goek, Kirill Salewskij, Gustav Jonsson, David Illig, Benedicta zu Putlitz, Daniel Petersheim, Yue Li, Pin-Hsuan Chen, Martina Kalauz, Raffaele Conca, Michael Sterr, Johanna Geuder, Yoko Mizoguchi, Remco T. A. Megens, Monika I. Linder, Daniel Kotlarz, Martina Rudelius, Josef M. Penninger, Carsten Marr, Christoph Klein
Published in: Nature Methods, Issue 21, 2024, Page(s) 868-881, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-024-02172-2

Development of an aerosol intervention for COVID-19 disease: Tolerability of soluble ACE2 (APN01) administered via nebulizer.

Author(s): Shoemaker RH, Panettieri RA Jr, Libutti SK, Hochster HS, Watts NR, Wingfield PT, Starkl P, Pimenov L, Gawish R, Hladik A, Knapp S, Boring D, White JM, Lawrence Q, Boone J, Marshall JD, Matthews RL, Cholewa BD, Richig JW, Chen BT, McCormick DL, Gugensberger R, Höller S, Penninger JM, Wirnsberger G.
Published in: PLoS One, 2022, Page(s) 2022 Jul 11;17(7):e0271066. , ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0271066

Identification of SARS-CoV-2–induced pathways reveals drug repurposing strategies

Author(s): Namshik Han, Woochang Hwang, Konstantinos Tzelepis, Patrick Schmerer, Eliza Yankova, Méabh MacMahon, Winnie Lei, Nicholas M. Katritsis, Anika Liu, Ulrike Felgenhauer, Alison Schuldt, Rebecca Harris, Kathryn Chapman, Frank McCaughan, Friedemann Weber, Tony Kouzarides
Published in: Science Advances, Issue 7, 2024, ISSN 2375-2548
Publisher: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.abh3032

Omicron variant of SARS-CoV-2 exhibits an increased resilience to the antiviral type I interferon response

Author(s): Lyudmila Shalamova, Ulrike Felgenhauer, Jochen Wilhelm, Andreas R Schaubmar, Kathrin Büttner, Andreas Schoen, Marek Widera, Sandra Ciesek, Friedemann Weber
Published in: PNAS Nexus, 2022, ISSN 2752-6542
Publisher: Oxford University Press
DOI: 10.1093/pnasnexus/pgac067

Engineering physiological environments to advance kidney organoid models from human pluripotent stem cells

Author(s): Anisha Pahuja, Iphigénie Goux Corredera, Daniel Moya-Rull, Elena Garreta, Nuria Montserrat
Published in: Current Opinion in Cell Biology, Issue 86, 2024, Page(s) 102306, ISSN 0955-0674
Publisher: Elsevier BV
DOI: 10.1016/j.ceb.2023.102306

A microfluidic platform integrating functional vascularized organoids-on-chip

Author(s): Clément Quintard, Emily Tubbs, Gustav Jonsson, Jie Jiao, Jun Wang, Nicolas Werschler, Camille Laporte, Amandine Pitaval, Thierno-Sidy Bah, Gideon Pomeranz, Caroline Bissardon, Joris Kaal, Alexandra Leopoldi, David A. Long, Pierre Blandin, Jean-Luc Achard, Christophe Battail, Astrid Hagelkruys, Fabrice Navarro, Yves Fouillet, Josef M. Penninger, Xavier Gidrol
Published in: Nature Communications, Issue 15, 2024, Page(s) 2024 Jun;9(6):1499-1512, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-024-45710-4

A diabetic milieu increases ACE2 expression and cellular susceptibility to SARS-CoV-2 infections in human kidney organoids and patient cells

Author(s): Garreta E, Prado P, Stanifer ML, Monteil V, Marco A, Ullate-Agote A, Moya-Rull D, Vilas-Zornoza A, Tarantino C, Romero JP, Jonsson G, Oria R, Leopoldi A, Hagelkruys A, Gallo M, González F, Domingo-Pedrol P, Gavaldà A, Del Pozo CH, Hasan Ali O, Ventura-Aguiar P, Campistol JM, Prosper F, Mirazimi A, Boulant S, Penninger JM, Montserrat N.
Published in: Cell Metab., 2022, ISSN 1550-4131
Publisher: Cell Press
DOI: 10.1016/j.cmet.2022.04.009

Pulmonary Surfactant Proteins Are Inhibited by Immunoglobulin A Autoantibodies in Severe COVID-19.

Author(s): Sinnberg T, Lichtensteiger C, Ali OH, Pop OT, Jochum AK, Risch L, Brugger SD, Velic A, Bomze D, Kohler P, Vernazza P, Albrich WC, Kahlert CR, Abdou MT, Wyss N, Hofmeister K, Niessner H, Zinner C, Gilardi M, Tzankov A, Röcken M, Dulovic A, Shambat SM, Ruetalo N, Buehler PK, Scheier TC, Jochum W, Kern L, Henz S, Schneider T, Kuster GM, Lampart M, Siegemund M, Bingisser R, Schindler M, Schneiderhan-
Published in: Am J Respir Crit Care Med, 2023, Page(s) 2023 Jan 1;207(1):38-49., ISSN 1097-4172
Publisher: the American Thoracic Society
DOI: 10.1164/rccm.202201-0011oc

Deliverables

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