Deliverables
Project logo marketing pack and website design and development
Plan for dissemination and exploitation of project resultsBest practice manual for findability, re-use and accessibility of infrastructures
Best practice manual for findability reuse and accessibility of infrastructures
User requirements analysis reportRecommendations for interoperability among infrastructures
Stakeholder input into the network graph provided by Third Global Biodiversity Informatics Conference (GBIC3)
Stakeholder input into the network graph provided by Third Global Biodiversity Informatics Conference GBIC3
Search and link association services: A RESTful API, which will input a link/accession number and return a ranked list of neighbors links with a confidence score
Search and link association services: A RESTful API, which will input a link/accessionnumber and return a ranked list of neighbors links with a confidence score
Passage retrieval services: A RESTful API, which will input a set of keywords and return a set of articles/passages ranked by relevanceRelational network graph for the Biodiversity Knowledge Hub (BKH)
Availability via API of single, harmonised sequenced material source annotations in ENA
Web interface for ELIXIR Contextual Data Clearinghouse
Web visualisation of mappings between CoL and other checklists
A workflow for bi-directional linking of data from literature to external resources
Validation and curation workbench for taxonomic data
Evaluation benchmark: a database of questions associated with a set of relevant articles (e.g. PMIDs) to measure the progress of the WP towards an effective search service
Evaluation benchmark: a database of questions associated with a set of relevant articles(e.g. PMIDs) to measure the progress of the WP towards an effective search service
Applications for interoperable access to OpenBiodiv through semantically enhanced queriesProject call definition and execution plan published via BiCIKL website
Publications
Author(s):
Valsecchi E, Gabbiadini A.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e120201, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e120201
Author(s):
Vynokurov D, Borovyk D, Chusova O et al.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e118128, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e118128
Author(s):
Groom Q, Dillen M, Addink W et al.
Published in:
Biodiversity Data Journal, Issue 11, 2023, Page(s) e109439, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.11.e109439
Author(s):
Bertazzo-Silva FA, Putzke J, Furlan-Lopes C et al.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e125727, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e125727
Author(s):
Montanaro G, Balhoff J, Girón J., Söderhom M, Tarasov S.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e121562, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e121562
Author(s):
Thiele K, Applequist W, Renner S et al.
Published in:
Taxon, Issue 72, 2023, Page(s) 965-1199, ISSN 1996-8175
Publisher:
John Wiley & Sons
DOI:
10.1002/tax.12931
Author(s):
Swati U, D`Souza S, Aravind PS et al.
Published in:
Biodiversity Data Journal, Issue 11, 2023, Page(s) e109946, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.11.e109946
Author(s):
Carla Cummins; Alisha Ahamed; Raheela Aslam; Josephine Burgin; Rajkumar Devraj; Ossama Edbali; Dipayan Gupta; Peter W. Harrison; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Simon Kay; Manish Kumar; Ankur Lathi; Rasko Leinonen; Fábio Madeira; Nandana Madhusoodanan; Milena Mansurova; Colman O’Cathail; Matt Pearce; Stephane P
Published in:
Nucleic Acids Research, Issue 50, 2022, Page(s) D106-D110, ISSN 1362-4954
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkab1051
Author(s):
Martorelli I, Pouryousefi A, Thiel H et al.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e119660, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e119660
Author(s):
Josephine Burgin; Alisha Ahamed; Carla Cummins; Rajkumar Devraj; Khadim Gueye; Dipayan Gupta; Vikas Gupta; Muhammad Haseeb; Maira Ihsan; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Manish Kumar; Ankur Lathi; Rasko Leinonen; Milena Mansurova; Jasmine McKinnon; Colman O’Cathail; Joana Paupério; Stéphane Pesant; Nadim Rahman; Gabriele Rinck; Sandeep Selvakumar; Swa
Published in:
Nucleic Acids Research, Issue 51, 2023, Page(s) D121–D125, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkac1051
Author(s):
Abarenkov K, Nilsson R, Larsson K et al.
Published in:
Nucleic Acids Research, Issue 52, 2024, Page(s) D791–D797, ISSN 1362-4962
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkad1039
Author(s):
Yatsiuk I, Leshchenko Y, Viunnyk V et al.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e120891, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e120891
Author(s):
Seah BKB
Published in:
Biodiversity Data Journal, Issue 11, 2023, Page(s) e114076, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.11.e114076
Author(s):
Kermek D, Pischiutta N, Hlebec D et al.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e121398, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e121398
Author(s):
Tanalgo KC, Dela Cruz KC, Agduma AR et al.
Published in:
Biodiversity Data Journal, Issue 11, 2023, Page(s) e110016, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.11.e110016
Author(s):
Astorga F, Groom Q, Fernandes Shimabukuro PH et al.
Published in:
One Health, Issue 16, 2023, Page(s) 100484, ISSN 2352-7714
Publisher:
Elsevier B.V.
DOI:
10.1016/j.onehlt.2023.100484
Author(s):
Novikov A
Published in:
Biodiversity Data Journal, Issue 11, 2023, Page(s) e10392, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.11.e103921
Author(s):
Akhmetova L, Kurochkin A, Frolov A.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e125090, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e125090
Author(s):
Caucheteur D, Pendlington Z, Roncaglia P et al.
Published in:
Bioinformatics, Issue 39, 2023, ISSN 1367-4811
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btac800
Author(s):
Angelova R, Gjonov I.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e124720, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e124720
Author(s):
Rossini M, Montanaro G, Montreuil O, S. Tarasov
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e120304, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e120304
Author(s):
Haderlé R, Bouveret L, Chazal J et al.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e125348, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e125348
Author(s):
Page R
Published in:
Biodiversity Data Journal, Issue 11, 2023, Page(s) e107914, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.11.e107914
Author(s):
Meyer R, Appeltans W, Duncan W et al.
Published in:
Biodiversity Data Journal, Issue 11, 2023, Page(s) e112420, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.11.e112420
Author(s):
Waterhouse RM, Adam-Blondon AF, Agosti D et al.
Published in:
F1000Research, Issue 10, 2021, Page(s) 1238, ISSN 2046-1402
Publisher:
F1000 Research Ltd.
DOI:
10.12688/f1000research.73825.1
Author(s):
Skaraki K, Pavloudi C, Dailianis T et al.
Published in:
Biodiversity Data Journal, Issue 12, 2024, Page(s) e114809, ISSN 1314-2828
Publisher:
Pensoft Publishers
DOI:
10.3897/bdj.12.e114809
Author(s):
Gupta, Vikas; Paupério, Joana; Burgin, Josephine; Jayathilaka, Suran; Cochrane, Guy
Published in:
F1000Research, Issue 11, 2022, Page(s) 1042, ISSN 2046-1402
Publisher:
F1000 Research Ltd.
DOI:
10.12688/f1000research.123934.1
Author(s):
Gupta V, Paupério J, Burgin J, Jayathilaka S, Cochrane G
Published in:
Biodiversity Information Science and Standards 6, Issue 6, 2022, Page(s) e91118
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.6.91118
Author(s):
Penev L, Kureas D, Groom Q et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e111482
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.111482
Author(s):
Paupério J, Burgin J, Gabaldón T, Lanfear J, Waterhouse RM, Cochrane G
Published in:
Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91204
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.6.91204
Author(s):
Dillen M, Plank A, Groom Q
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e110440
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.110440
Author(s):
Lorenz Simoes F, Agosti D, Alvares DJ et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e110692
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.110692
Author(s):
Ioannidis-Pantopikos A, Agosti D
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75147
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.75147
Author(s):
Guidoti M, Sokolowicz C, Simoes F, Gonçalves V, Ruschel T, Alvares DJ, Agosti D
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75690
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.75690
Author(s):
Agosti, Donat; Miller, Jeremy
Published in:
Issue 1, 2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7262609
Author(s):
Miller JA, Agosti D, Guidoti M, Rivera Quiroz F
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75543
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.75543
Author(s):
Agosti D, Benichou L, Penev L, Hyam R
Published in:
Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91241
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.6.91241
Author(s):
Donat Agosti; Patrick Ruch; Jose Benito Gonzalez Lopez; Lyubomir Penev
Published in:
Biodiversity Information Science and Standards 6: e91167, Issue 6, 2022
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.6.91167
Author(s):
Agosti, Donat
Published in:
Issue 1, 2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7081339
Author(s):
Alvares DJ, Guidoti M, Simoes F, Sokolowicz C, Agosti D
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75604
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.75604
Author(s):
Wouter Addink; Niki Kyriakopoulou
Published in:
Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91428
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.6.91428
Author(s):
Benichou L, Salaün M, Boyadzhieva I et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e110919
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.110919
Author(s):
Pasche E, Agosti D, Penev L et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e111647
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.111647
Author(s):
Agosti, Donat
Published in:
Issue 1, 2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6574848
Author(s):
Simoes F, Agosti D, Guidoti M
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75432
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.75432
Author(s):
Paupério J, Gupta V, Burgin J et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e111835
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.111835
Author(s):
Gmür R, Agosti D, Sautter G
Published in:
Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e93707
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.6.93707
Author(s):
Agosti, Donat
Published in:
Issue 1, 2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6777916
Author(s):
Balavenkataraman Kadhirvelu V, Abarenkov K, Zirk A et al.
Published in:
Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e93595
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.6.93595
Author(s):
Agosti D, Penev L, Ruch P et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e110681
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.110681
Author(s):
Groom Q, Applequist W, Lehtonen S et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e111125
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.111125
Author(s):
Hernández-Robles D, Plata C, Döring M et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e111684
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.111684
Author(s):
Islam S, Theocharides S, Addink W
Published in:
Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91168
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.6.91168
Author(s):
Agosti D
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75491
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.75491
Author(s):
Penev L, Koureas D, Groom Q, Lanfear J, Agosti D, Casino A, Miller J, Arvanitidis C, Cochrane G, Barov B, Hobern D, Banki O, Addink W, Kõljalg U, Ruch P, Copas K, Mergen P, Güntsch A, Benichou L, Benito Gonzalez Lopez J
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) 3
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.74233
Author(s):
Meeus S, Addink W, Agosti D, Arvanitidis C, Dimitrova M, González-Aranda JM, Holetschek J, Islam S, Jeppesen TS, Mietchen D, Robertson T, Sanchez Cano FM, Trekels M, Groom Q
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e74325
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.74325
Author(s):
Abarenkov K, Zirk A, Põldmaa K, Piirmann T, Pöhönen R, Ivanov F, Adojaan K, Kõljalg U
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e74249
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.74249
Author(s):
Gmür R, Agosti D
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75641
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.75641
Author(s):
Giora J, Agosti D, Ruschel T et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e110695
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.110695
Author(s):
Pasche E, Gobeill J, Agosti D et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e111660
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.111660
Author(s):
Penev L, Dimitrova M, Zhelezov G, Georgiev T
Published in:
Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91357
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.6.91357
Author(s):
Sokolowicz C, Guidoti M, Agosti D
Published in:
Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e74369
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.5.74369
Author(s):
Agosti, Donat
Published in:
Issue 1, 2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6590938
Author(s):
Penev L, Kuhn T, Pyle R et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023, Page(s) e110725
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.110725
Author(s):
Penev L, Zhelezov G, Dimitrova M et al.
Published in:
Biodiversity Information Science and Standards, Issue 7, 2023
Publisher:
Pensoft Publishers
DOI:
10.3897/biss.7.110724
Author(s):
Benichou L, Agosti D, Egloff W et al.
Published in:
Research Ideas and Outcomes, Issue 9, 2023, Page(s) e115466, ISSN 2367-7163
Publisher:
Pensoft Publishers
DOI:
10.3897/rio.9.e115466
Author(s):
Nicolson N, Trekels M, Groom Q et al.
Published in:
Plants, People, Planet, Issue 5, 2023, Page(s) 899-907, ISSN 2572-2611
Publisher:
New Phytologist Foundation
DOI:
10.1002/ppp3.10438
Author(s):
Meeus S, Addink W, Agosti D et al.
Published in:
Research Ideas and Outcomes, Issue 8, 2022, Page(s) e96180, ISSN 2367-7163
Publisher:
Pensoft Publishers
DOI:
10.3897/rio.8.e96180
Author(s):
Agosti D, Bénichou L, Casino A et al.
Published in:
Research Ideas and Outcomes, Issue 10, 2024, Page(s) e126586
Publisher:
Pensoft Publishers
DOI:
10.3897/rio.10.e126586
Author(s):
Donat Agosti; Laurence Benichou; Wouter Addink; Christos Arvanitidis; Terence Catapano; Guy Cochrane; Mathias Dillen; Markus Döring; Teodor Georgiev; Isabelle Gérard; Quentin Groom; Puneet Kishor; Andreas Kroh; Jiří Kvaček; Patricia Mergen; Daniel Mietchen; Joana Pauperio; Guido Sautter; Lyubomir Penev
Published in:
Research Ideas and Outcomes, Issue 8, 2022, Page(s) e97374
Publisher:
Pensoft Publishers
DOI:
10.3897/rio.8.e97374
Author(s):
Chua P, Heil K, Maccallum P et al.
Published in:
F1000, Issue 12, 2023, Page(s) 1212, ISSN 2046-1402
Publisher:
F1000 Research Ltd.
DOI:
10.7490/f1000research.1119629.1
Author(s):
Meeus S, August T, Trekels M, Reyserhove L, & Groom QJ
Published in:
BioHackrXiv Preprints, 2021
Publisher:
BioHackrXiv Preprints
DOI:
10.37044/osf.io/4ahng
Author(s):
Benichou L, Buschbom J, Campbell M, Hermann E, Kvacek J, Mergen P, Mitchell L, Rinaldo C, Agosti D
Published in:
Research Ideas and Outcomes, Issue 10, 2022, Page(s) 1-7
Publisher:
Pensoft Publishers
DOI:
10.3897/rio.8.e94338
Author(s):
Penev L, Groom Q, Casino A et al.
Published in:
Research Ideas and Outcomes, Issue 10, 2024, Page(s) e126588
Publisher:
Pensoft Publishers
DOI:
10.3897/rio.10.e126588
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