Skip to main content
European Commission logo print header

Biodiversity Community Integrated Knowledge Library

Deliverables

Publications

The ENA Source Attribute Helper: An API for improved biological source data

Author(s): Gupta V, Paupério J, Burgin J, Jayathilaka S, Cochrane G
Published in: Biodiversity Information Science and Standards 6, Issue 6, 2022, Page(s) e91118
Publisher: Pensoft Publishers
DOI: 10.3897/biss.6.91118

Towards Connecting Molecular Data and the Biodiversity Research Community: An ENA and ELIXIR biodiversity community perspective

Author(s): Paupério J, Burgin J, Gabaldón T, Lanfear J, Waterhouse RM, Cochrane G
Published in: Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91204
Publisher: Pensoft Publishers
DOI: 10.3897/biss.6.91204

Biodiversity Literature Repository: Building the customized FAIR repository by using custom metadata

Author(s): Ioannidis-Pantopikos A, Agosti D
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75147
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.75147

TreatmentBank: Plazi’s strategies and its implementation to most efficiently liberate data from scholarly publications

Author(s): Guidoti M, Sokolowicz C, Simoes F, Gonçalves V, Ruschel T, Alvares DJ, Agosti D
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75690
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.75690

The TreatmentBank factory: Data access

Author(s): Agosti, Donat; Miller, Jeremy
Published in: Issue 1, 2022
Publisher: Zenodo
DOI: 10.5281/zenodo.7262609

Linking and the Role of the Material Citation

Author(s): Miller JA, Agosti D, Guidoti M, Rivera Quiroz F
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75543
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.75543

A Possible Workflow from New and Legacy Publications to keep the World Flora Online up to date with New Species and Augmenting Taxonomic Treatments

Author(s): Agosti D, Benichou L, Penev L, Hyam R
Published in: Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91241
Publisher: Pensoft Publishers
DOI: 10.3897/biss.6.91241

Enabling Published Taxonomic Data to be used to Address the Biodiversity Crisis: Biodiversity Literature Repository and TreatmentBank

Author(s): Donat Agosti; Patrick Ruch; Jose Benito Gonzalez Lopez; Lyubomir Penev
Published in: Biodiversity Information Science and Standards 6: e91167, Issue 6, 2022
Publisher: Pensoft Publishers
DOI: 10.3897/biss.6.91167

The significance of taxonomic publications to understand biodiversity in the digital world

Author(s): Agosti, Donat
Published in: Issue 1, 2022
Publisher: Zenodo
DOI: 10.5281/zenodo.7081339

The BHL-Plazi Partnership: Getting data from the 1800s directly into 21st century, reused digital accessible knowledge

Author(s): Alvares DJ, Guidoti M, Simoes F, Sokolowicz C, Agosti D
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75604
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.75604

Connecting the Dots: Joint development of best practices between infrastructures in support of bidirectional data linking

Author(s): Wouter Addink; Niki Kyriakopoulou
Published in: Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91428
Publisher: Pensoft Publishers
DOI: 10.3897/biss.6.91428

Discovering known biodiversity

Author(s): Agosti, Donat
Published in: Issue 1, 2022
Publisher: Zenodo
DOI: 10.5281/zenodo.6574848

Delivering Fit-for-Use Data: Quality control

Author(s): Simoes F, Agosti D, Guidoti M
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75432
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.75432

Beyond the print and PDF prisons: Data about biodiversity want to be free

Author(s): Agosti, Donat
Published in: Issue 1, 2022
Publisher: Zenodo
DOI: 10.5281/zenodo.6777916

Zen and the Art of Persistent Identifier Service Development for Digital Specimen

Author(s): Islam S, Theocharides S, Addink W
Published in: Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91168
Publisher: Pensoft Publishers
DOI: 10.3897/biss.6.91168

(Re)Discovering Known Biodiversity: Introduction

Author(s): Agosti D
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75491
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.75491

Towards Interlinked FAIR Biodiversity Knowledge: The BiCIKL perspective

Author(s): Penev L, Koureas D, Groom Q, Lanfear J, Agosti D, Casino A, Miller J, Arvanitidis C, Cochrane G, Barov B, Hobern D, Banki O, Addink W, Kõljalg U, Ruch P, Copas K, Mergen P, Güntsch A, Benichou L, Benito Gonzalez Lopez J
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) 3
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.74233

Hacking Infrastructures Together: Towards better interoperability of infrastructures

Author(s): Meeus S, Addink W, Agosti D, Arvanitidis C, Dimitrova M, González-Aranda JM, Holetschek J, Islam S, Jeppesen TS, Mietchen D, Robertson T, Sanchez Cano FM, Trekels M, Groom Q
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e74325
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.74325

Third-party Annotations: Linking PlutoF platform and the ELIXIR Contextual Data ClearingHouse for the reporting of source material annotation gaps and inaccuracies

Author(s): Abarenkov K, Zirk A, Põldmaa K, Piirmann T, Pöhönen R, Ivanov F, Adojaan K, Kõljalg U
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e74249
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.74249

Synospecies, an application to reflect changes in taxonomic names based on a triple store based on taxonomic data liberated from publication

Author(s): Gmür R, Agosti D
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e75641
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.75641

The OpenBiodiv Knowledge Graph Rebuilt: A semantic hub on top of the ARPHA-published content and the Biodiversity Literature Repository

Author(s): Penev L, Dimitrova M, Zhelezov G, Georgiev T
Published in: Biodiversity Information Science and Standards, Issue 6, 2022, Page(s) e91357
Publisher: Pensoft Publishers
DOI: 10.3897/biss.6.91357

Discovering Known Biodiversity: Digital accessible knowledge — Getting the community involved

Author(s): Sokolowicz C, Guidoti M, Agosti D
Published in: Biodiversity Information Science and Standards, Issue 5, 2021, Page(s) e74369
Publisher: Pensoft Publishers
DOI: 10.3897/biss.5.74369

Nothing in (taxonomic) publishing makes sense except in the light of treatments

Author(s): Agosti, Donat
Published in: Issue 1, 2022
Publisher: Zenodo
DOI: 10.5281/zenodo.6590938

The European Nucleotide Archive in 2021.

Author(s): Carla Cummins; Alisha Ahamed; Raheela Aslam; Josephine Burgin; Rajkumar Devraj; Ossama Edbali; Dipayan Gupta; Peter W. Harrison; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Simon Kay; Manish Kumar; Ankur Lathi; Rasko Leinonen; Fábio Madeira; Nandana Madhusoodanan; Milena Mansurova; Colman O’Cathail; Matt Pearce; Stephane P
Published in: Nucleic Acids Research, Issue 50, 2022, Page(s) D106-D110, ISSN 1362-4954
Publisher: Oxford University Press
DOI: 10.1093/nar/gkab1051

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

Author(s): Waterhouse RM, Adam-Blondon AF, Agosti D et al.
Published in: F1000Research, Issue 10, 2021, Page(s) 1238, ISSN 2046-1402
Publisher: F1000 Research Ltd.
DOI: 10.12688/f1000research.73825.1

ENA Source Attribute Helper: An Application Programming Interface to facilitate accurate reference to biological source data

Author(s): Gupta, Vikas; Paupério, Joana; Burgin, Josephine; Jayathilaka, Suran; Cochrane, Guy
Published in: F1000Research, Issue 11, 2022, Page(s) 1042, ISSN 2046-1402
Publisher: F1000 Research Ltd.
DOI: 10.12688/f1000research.123934.1

Recommendations for use of annotations and persistent identifiers in taxonomy and biodiversity publishing

Author(s): Donat Agosti; Laurence Benichou; Wouter Addink; Christos Arvanitidis; Terence Catapano; Guy Cochrane; Mathias Dillen; Markus Döring; Teodor Georgiev; Isabelle Gérard; Quentin Groom; Puneet Kishor; Andreas Kroh; Jiří Kvaček; Patricia Mergen; Daniel Mietchen; Joana Pauperio; Guido Sautter; Lyubomir Penev
Published in: Research Ideas and Outcomes, Issue 8, 2022, Page(s) e97374
Publisher: Pensoft Publishers
DOI: 10.3897/rio.8.e97374

Network analysis of specimen co-collection

Author(s): Meeus S, August T, Trekels M, Reyserhove L, & Groom QJ
Published in: BioHackrXiv Preprints, 2021
Publisher: BioHackrXiv Preprints
DOI: 10.37044/osf.io/4ahng

Joint statement on best practices for the citation of authorities of scientific names in taxonomy by CETAF, SPNHC and BHL

Author(s): Benichou L, Buschbom J, Campbell M, Hermann E, Kvacek J, Mergen P, Mitchell L, Rinaldo C, Agosti D
Published in: Research Ideas and Outcomes, Issue 10, 2022, Page(s) 1-7
Publisher: Pensoft Publishers
DOI: 10.3897/rio.8.e94338

Searching for OpenAIRE data...

There was an error trying to search data from OpenAIRE

No results available