Biodiversity Community Integrated Knowledge Library

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Project logo, marketing pack and website design and development

Project logo marketing pack and website design and development

Plan for dissemination and exploitation of project results
Outreach initiatives report
Best practice manual for findability, re-use and accessibility of infrastructures

Best practice manual for findability reuse and accessibility of infrastructures

Report on a long term sustainability plan for the BiCIKL community services
User requirements analysis report
Report on full call process
Data standards and workflows for linking sequence data with specimens implemented and published
Recommendations for interoperability among infrastructures
Report on pilot call process
Stakeholder input into the network graph provided by Third Global Biodiversity Informatics Conference (GBIC3)

Stakeholder input into the network graph provided by Third Global Biodiversity Informatics Conference GBIC3

Periodic assessment of VA by external board

New and updated taxonomic data products automatically visible in taxonomic framework
First submission and access tools available for BIOM data
Validation tool open-source software release
Relational network graph for the Biodiversity Knowledge Hub (BKH)
Availability via API of single, harmonised sequenced material source annotations in ENA
A repeatable informatics workflow that links people and places to stable identifiers of those entities, including a validation and preservation step
Web interface for ELIXIR Contextual Data Clearinghouse
Web visualisation of mappings between CoL and other checklists
A workflow for bi-directional linking of data from literature to external resources
Workflow for bi-directional linking of taxonomic references to literature
Validation and curation workbench for taxonomic data
Enhanced, standalone and freely accessible installation of the ARPHA Writing Tool (AWT)
Evaluation benchmark: a database of questions associated with a set of relevant articles (e.g. PMIDs) to measure the progress of the WP towards an effective search service

Evaluation benchmark: a database of questions associated with a set of relevant articles(e.g. PMIDs) to measure the progress of the WP towards an effective search service

CoL services for direct encapsulated use within search and discovery services of BiCIKL partner infrastructures
Applications for interoperable access to OpenBiodiv through semantically enhanced queries
Automated workflow for discovery, semantic enhancement,mapping, extraction, FAIRfying, and dissemination of data liberated from literature

Automated workflow for discovery, semantic enhancement,mapping, extraction, FAIRfying,and dissemination of data liberated from literature

Digital Object Interface Protocol [DOIP] enabled Digital Object repository installation to store and provide digital specimen information

Architecture Design for a pan-European PID system for Digital Specimens
Workbench implementation: a set of responsive Graphic User Interfaces developed in HTML 5.x/JavaScript to operate the aforementioned services
The BIodiversity Knowledge Hub (BKH)
World class virtual access to the infrastructures in support of Biodiversity and related subject matter research is provided
Search and link association services: A RESTful API, which will input a link/accession number and return a ranked list of neighbors links with a confidence score

Search and link association services: A RESTful API, which will input a link/accessionnumber and return a ranked list of neighbors links with a confidence score

BiCKL training programme (MOOC)

Training programme for capacity building delivered as a Massive Open Online Course (MOOC)

Factoid question-answering: A RESTful API, which will input a factoid question in natural language and extract a short answer out of the articles/passages returned by D11.3

Factoid question-answering: A RESTful API, which will input a factoid question in naturallanguage and extract a short answer out of the articles/passages returned by D11.3

Passage retrieval services: A RESTful API, which will input a set of keywords and return a set of articles/passages ranked by relevance

Project call definition and execution plan, published via BiCIKL website

Project call definition and execution plan published via BiCIKL website

Data Management Plan

Publications

An Observatory to monitor range extension of the Mediterranean monk seal based on its eDNA traces: collecting data and delivering results in the “Open Science” era

Auteurs: Valsecchi E, Gabbiadini A.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e120201, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e120201

Ukrainian Plant Trait Database: UkrTrait v. 1.0

Auteurs: Vynokurov D, Borovyk D, Chusova O et al.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e118128, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e118128

Envisaging a global infrastructure to exploit the potential of digitised collections

Auteurs: Groom Q, Dillen M, Addink W et al.
Publié dans: Biodiversity Data Journal, Numéro 11, 2023, Page(s) e109439, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.11.e109439

Expanding geographic distribution knowledge of Galerina marginata (Batsch) Kühner (Agaricales, Hymenogastraceae) with a novel Antarctic record

Auteurs: Bertazzo-Silva FA, Putzke J, Furlan-Lopes C et al.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e125727, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e125727

Computable Species Descriptions and Nanopublications: Applying Ontology-based Technologies to Dung Beetles (Coleoptera: Scarabaeinae)

Auteurs: Montanaro G, Balhoff J, Girón J., Söderhom M, Tarasov S.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e121562, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e121562

DNA sequences as types: A discussion paper from the Special-purpose Committee established at the XIX International Botanical Congress in Shenzhen, China

Auteurs: Thiele K, Applequist W, Renner S et al.
Publié dans: Taxon, Numéro 72, 2023, Page(s) 965-1199, ISSN 1996-8175
Éditeur: John Wiley & Sons
DOI: 10.1002/tax.12931

A comprehensive database of squirrel distribution and occurrence in South Asia

Auteurs: Swati U, D`Souza S, Aravind PS et al.
Publié dans: Biodiversity Data Journal, Numéro 11, 2023, Page(s) e109946, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.11.e109946

The European Nucleotide Archive in 2021.

Auteurs: Carla Cummins; Alisha Ahamed; Raheela Aslam; Josephine Burgin; Rajkumar Devraj; Ossama Edbali; Dipayan Gupta; Peter W. Harrison; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Simon Kay; Manish Kumar; Ankur Lathi; Rasko Leinonen; Fábio Madeira; Nandana Madhusoodanan; Milena Mansurova; Colman O’Cathail; Matt Pearce; Stephane P
Publié dans: Nucleic Acids Research, Numéro 50, 2022, Page(s) D106-D110, ISSN 1362-4954
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkab1051

Multiple graphical views for automatically generating SQL for the MycoDiversity DB; making fungal biodiversity studies accessible

Auteurs: Martorelli I, Pouryousefi A, Thiel H et al.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e119660, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e119660

The European Nucleotide Archive in 2022

Auteurs: Josephine Burgin; Alisha Ahamed; Carla Cummins; Rajkumar Devraj; Khadim Gueye; Dipayan Gupta; Vikas Gupta; Muhammad Haseeb; Maira Ihsan; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Manish Kumar; Ankur Lathi; Rasko Leinonen; Milena Mansurova; Jasmine McKinnon; Colman O’Cathail; Joana Paupério; Stéphane Pesant; Nadim Rahman; Gabriele Rinck; Sandeep Selvakumar; Swa
Publié dans: Nucleic Acids Research, Numéro 51, 2023, Page(s) D121–D125, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkac1051

The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

Auteurs: Abarenkov K, Nilsson R, Larsson K et al.
Publié dans: Nucleic Acids Research, Numéro 52, 2024, Page(s) D791–D797, ISSN 1362-4962
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkad1039

The comprehensive checklist of myxomycetes of Ukraine, based on extended occurrence and reference datasets

Auteurs: Yatsiuk I, Leshchenko Y, Viunnyk V et al.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e120891, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e120891

Paying it forward: Crowdsourcing the harmonisation and linking of taxon names and biodiversity identifiers

Auteurs: Seah BKB
Publié dans: Biodiversity Data Journal, Numéro 11, 2023, Page(s) e114076, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.11.e114076

Utilising public sequence databases to investigate genetic diversity of stoneflies in Medvednica Nature Park

Auteurs: Kermek D, Pischiutta N, Hlebec D et al.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e121398, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e121398

The MOBIOS+: A FAIR (Findable, Accessible, Interoperable and Reusable) database for Mindanao's terrestrial biodiversity

Auteurs: Tanalgo KC, Dela Cruz KC, Agduma AR et al.
Publié dans: Biodiversity Data Journal, Numéro 11, 2023, Page(s) e110016, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.11.e110016

Biodiversity data supports research on human infectious diseases: Global trends, challenges, and opportunities

Auteurs: Astorga F, Groom Q, Fernandes Shimabukuro PH et al.
Publié dans: One Health, Numéro 16, 2023, Page(s) 100484, ISSN 2352-7714
Éditeur: Elsevier B.V.
DOI: 10.1016/j.onehlt.2023.100484

An annotated nomenclatural checklist of endemic vascular plants distributed in the Ukrainian Carpathians

Auteurs: Novikov A
Publié dans: Biodiversity Data Journal, Numéro 11, 2023, Page(s) e10392, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.11.e103921

Dung-beetles (Coleoptera, Scarabaeidae, Aphodiinae, Scarabaeinae) feeding on faeces of steppe marmots Marmota bobak (Rodentia, Sciuridae) in Middle Volga territory

Auteurs: Akhmetova L, Kurochkin A, Frolov A.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e125090, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e125090

COVoc and COVTriage: novel resources to support literature triage

Auteurs: Caucheteur D, Pendlington Z, Roncaglia P et al.
Publié dans: Bioinformatics, Numéro 39, 2023, ISSN 1367-4811
Éditeur: Oxford University Press
DOI: 10.1093/bioinformatics/btac800

Twenty-five-year mapping species of the superfamily Cercopoidea (Hemiptera, Auchenorrhyncha) in Bulgaria

Auteurs: Angelova R, Gjonov I.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e124720, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e124720

Towards computable taxonomic knowledge: Leveraging nanopublications for sharing new synonyms in the Madagascan genus Helictopleurus (Coleoptera, Scarabaeinae)

Auteurs: Rossini M, Montanaro G, Montreuil O, S. Tarasov
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e120304, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e120304

eDNA-based survey of the marine vertebrate biodiversity off the west coast of Guadeloupe (French West Indies)

Auteurs: Haderlé R, Bouveret L, Chazal J et al.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e125348, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e125348

Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people

Auteurs: Page R
Publié dans: Biodiversity Data Journal, Numéro 11, 2023, Page(s) e107914, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.11.e107914

Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability

Auteurs: Meyer R, Appeltans W, Duncan W et al.
Publié dans: Biodiversity Data Journal, Numéro 11, 2023, Page(s) e112420, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.11.e112420

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

Auteurs: Waterhouse RM, Adam-Blondon AF, Agosti D et al.
Publié dans: F1000Research, Numéro 10, 2021, Page(s) 1238, ISSN 2046-1402
Éditeur: F1000 Research Ltd.
DOI: 10.12688/f1000research.73825.1

Microbial diversity in four Mediterranean irciniid sponges

Auteurs: Skaraki K, Pavloudi C, Dailianis T et al.
Publié dans: Biodiversity Data Journal, Numéro 12, 2024, Page(s) e114809, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.12.e114809

ENA Source Attribute Helper: An Application Programming Interface to facilitate accurate reference to biological source data

Auteurs: Gupta, Vikas; Paupério, Joana; Burgin, Josephine; Jayathilaka, Suran; Cochrane, Guy
Publié dans: F1000Research, Numéro 11, 2022, Page(s) 1042, ISSN 2046-1402
Éditeur: F1000 Research Ltd.
DOI: 10.12688/f1000research.123934.1

The ENA Source Attribute Helper: An API for improved biological source data

Auteurs: Gupta V, Paupério J, Burgin J, Jayathilaka S, Cochrane G
Publié dans: Biodiversity Information Science and Standards 6, Numéro 6, 2022, Page(s) e91118
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.6.91118

The Biodiversity Knowledge Hub (BKH): A Crosspoint and Knowledge Broker for FAIR and Linked Biodiversity Data

Auteurs: Penev L, Kureas D, Groom Q et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e111482
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.111482

Towards Connecting Molecular Data and the Biodiversity Research Community: An ENA and ELIXIR biodiversity community perspective

Auteurs: Paupério J, Burgin J, Gabaldón T, Lanfear J, Waterhouse RM, Cochrane G
Publié dans: Biodiversity Information Science and Standards, Numéro 6, 2022, Page(s) e91204
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.6.91204

On a BiCIKL to Wikidata: Harmonizing the chaotic universe of natural history collectors

Auteurs: Dillen M, Plank A, Groom Q
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e110440
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.110440

Post-Publication Linking

Auteurs: Lorenz Simoes F, Agosti D, Alvares DJ et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e110692
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.110692

Biodiversity Literature Repository: Building the customized FAIR repository by using custom metadata

Auteurs: Ioannidis-Pantopikos A, Agosti D
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e75147
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.75147

TreatmentBank: Plazi’s strategies and its implementation to most efficiently liberate data from scholarly publications

Auteurs: Guidoti M, Sokolowicz C, Simoes F, Gonçalves V, Ruschel T, Alvares DJ, Agosti D
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e75690
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.75690

The TreatmentBank factory: Data access

Auteurs: Agosti, Donat; Miller, Jeremy
Publié dans: Numéro 1, 2022
Éditeur: Zenodo
DOI: 10.5281/zenodo.7262609

Linking and the Role of the Material Citation

Auteurs: Miller JA, Agosti D, Guidoti M, Rivera Quiroz F
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e75543
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.75543

A Possible Workflow from New and Legacy Publications to keep the World Flora Online up to date with New Species and Augmenting Taxonomic Treatments

Auteurs: Agosti D, Benichou L, Penev L, Hyam R
Publié dans: Biodiversity Information Science and Standards, Numéro 6, 2022, Page(s) e91241
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.6.91241

Collection and specimen data life cycle completed: The case of Pensoft's journals and OpenBiodiv Knowledge Graph

Auteurs: Penev, Lyubomir
Publié dans: Zenodo, 2022
Éditeur: Zenodo
DOI: 10.5281/zenodo.6593345

Enabling Published Taxonomic Data to be used to Address the Biodiversity Crisis: Biodiversity Literature Repository and TreatmentBank

Auteurs: Donat Agosti; Patrick Ruch; Jose Benito Gonzalez Lopez; Lyubomir Penev
Publié dans: Biodiversity Information Science and Standards 6: e91167, Numéro 6, 2022
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.6.91167

The significance of taxonomic publications to understand biodiversity in the digital world

Auteurs: Agosti, Donat
Publié dans: Numéro 1, 2022
Éditeur: Zenodo
DOI: 10.5281/zenodo.7081339

The BHL-Plazi Partnership: Getting data from the 1800s directly into 21st century, reused digital accessible knowledge

Auteurs: Alvares DJ, Guidoti M, Simoes F, Sokolowicz C, Agosti D
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e75604
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.75604

Connecting the Dots: Joint development of best practices between infrastructures in support of bidirectional data linking

Auteurs: Wouter Addink; Niki Kyriakopoulou
Publié dans: Biodiversity Information Science and Standards, Numéro 6, 2022, Page(s) e91428
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.6.91428

Pre-Publication Data Linking in Taxonomy and Biodiversity: The ARPHA and Metotaxa-Metostem Publishing Systems.

Auteurs: Benichou L, Salaün M, Boyadzhieva I et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e110919
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.110919

"Towards ""Biodiversity PMC"""

Auteurs: Pasche E, Agosti D, Penev L et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e111647
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.111647

Discovering known biodiversity

Auteurs: Agosti, Donat
Publié dans: Numéro 1, 2022
Éditeur: Zenodo
DOI: 10.5281/zenodo.6574848

Delivering Fit-for-Use Data: Quality control

Auteurs: Simoes F, Agosti D, Guidoti M
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e75432
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.75432

Improving FAIRness of eDNA and Metabarcoding Data: Standards and tools for European Nucleotide Archive data deposition

Auteurs: Paupério J, Gupta V, Burgin J et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e111835
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.111835

Synospecies, a Linked Data Application to Explore Taxonomic Names

Auteurs: Gmür R, Agosti D, Sautter G
Publié dans: Biodiversity Information Science and Standards, Numéro 6, 2022, Page(s) e93707
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.6.93707

Beyond the print and PDF prisons: Data about biodiversity want to be free

Auteurs: Agosti, Donat
Publié dans: Numéro 1, 2022
Éditeur: Zenodo
DOI: 10.5281/zenodo.6777916

Enabling Community Curation of Biological Source Annotations of Molecular Data Through PlutoF and the ELIXIR Contextual Data Clearinghouse

Auteurs: Balavenkataraman Kadhirvelu V, Abarenkov K, Zirk A et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 6, 2022, Page(s) e93595
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.6.93595

The Ecosystem of Linked Biodiversity Publications: General Picture of Tools and Services Created by Plazi, PENSOFT, MNHN, CETAF, Zenodo, and SIBiLS

Auteurs: Agosti D, Penev L, Ruch P et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e110681
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.110681

Exploring Options for Naming Taxa Based on DNA Sequences under the International Code of Nomenclature for Algae, Fungi, and Plants

Auteurs: Groom Q, Applequist W, Lehtonen S et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e111125
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.111125

Towards a More Comprehensive Catalogue of Life Checklist

Auteurs: Hernández-Robles D, Plata C, Döring M et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e111684
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.111684

Zen and the Art of Persistent Identifier Service Development for Digital Specimen

Auteurs: Islam S, Theocharides S, Addink W
Publié dans: Biodiversity Information Science and Standards, Numéro 6, 2022, Page(s) e91168
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.6.91168

(Re)Discovering Known Biodiversity: Introduction

Auteurs: Agosti D
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e75491
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.75491

Towards Interlinked FAIR Biodiversity Knowledge: The BiCIKL perspective

Auteurs: Penev L, Koureas D, Groom Q, Lanfear J, Agosti D, Casino A, Miller J, Arvanitidis C, Cochrane G, Barov B, Hobern D, Banki O, Addink W, Kõljalg U, Ruch P, Copas K, Mergen P, Güntsch A, Benichou L, Benito Gonzalez Lopez J
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) 3
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.74233

Hacking Infrastructures Together: Towards better interoperability of infrastructures

Auteurs: Meeus S, Addink W, Agosti D, Arvanitidis C, Dimitrova M, González-Aranda JM, Holetschek J, Islam S, Jeppesen TS, Mietchen D, Robertson T, Sanchez Cano FM, Trekels M, Groom Q
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e74325
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.74325

Third-party Annotations: Linking PlutoF platform and the ELIXIR Contextual Data ClearingHouse for the reporting of source material annotation gaps and inaccuracies

Auteurs: Abarenkov K, Zirk A, Põldmaa K, Piirmann T, Pöhönen R, Ivanov F, Adojaan K, Kõljalg U
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e74249
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.74249

Synospecies, an application to reflect changes in taxonomic names based on a triple store based on taxonomic data liberated from publication

Auteurs: Gmür R, Agosti D
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e75641
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.75641

Engaging the Scientific Community, Authors and Publishers in FAIR Taxonomic Data Liberation: An Overview of Training Resources at Plazi

Auteurs: Giora J, Agosti D, Ruschel T et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e110695
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.110695

From SIBiLS to Biodiversity PMC: Foundations for the One Health Library

Auteurs: Pasche E, Gobeill J, Agosti D et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e111660
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.111660

The OpenBiodiv Knowledge Graph Rebuilt: A semantic hub on top of the ARPHA-published content and the Biodiversity Literature Repository

Auteurs: Penev L, Dimitrova M, Zhelezov G, Georgiev T
Publié dans: Biodiversity Information Science and Standards, Numéro 6, 2022, Page(s) e91357
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.6.91357

Discovering Known Biodiversity: Digital accessible knowledge — Getting the community involved

Auteurs: Sokolowicz C, Guidoti M, Agosti D
Publié dans: Biodiversity Information Science and Standards, Numéro 5, 2021, Page(s) e74369
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.5.74369

Nothing in (taxonomic) publishing makes sense except in the light of treatments

Auteurs: Agosti, Donat
Publié dans: Numéro 1, 2022
Éditeur: Zenodo
DOI: 10.5281/zenodo.6590938

Nanopublications for Biodiversity Go Live

Auteurs: Penev L, Kuhn T, Pyle R et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023, Page(s) e110725
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.110725

OpenBiodiv for Users: Applications and Approaches to Explore a Biodiversity Knowledge Graph

Auteurs: Penev L, Zhelezov G, Dimitrova M et al.
Publié dans: Biodiversity Information Science and Standards, Numéro 7, 2023
Éditeur: Pensoft Publishers
DOI: 10.3897/biss.7.110724

Semantically enriched publications - The What, Who and How it changes research

Auteurs: Agosti D, Krug R, Benichou L et al.
Publié dans: Zenodo, 2024
Éditeur: Zenodo
DOI: 10.5281/zenodo.11802785

Joint statement by CETAF, SPNHC and BHL on DATA within scientific publications: clarification of [non]copyrightability

Auteurs: Benichou L, Agosti D, Egloff W et al.
Publié dans: Research Ideas and Outcomes, Numéro 9, 2023, Page(s) e115466, ISSN 2367-7163
Éditeur: Pensoft Publishers
DOI: 10.3897/rio.9.e115466

Global access to nomenclatural botanical resources: Evaluating open access availability

Auteurs: Nicolson N, Trekels M, Groom Q et al.
Publié dans: Plants, People, Planet, Numéro 5, 2023, Page(s) 899-907, ISSN 2572-2611
Éditeur: New Phytologist Foundation
DOI: 10.1002/ppp3.10438

Recommendations for interoperability among infrastructures

Auteurs: Meeus S, Addink W, Agosti D et al.
Publié dans: Research Ideas and Outcomes, Numéro 8, 2022, Page(s) e96180, ISSN 2367-7163
Éditeur: Pensoft Publishers
DOI: 10.3897/rio.8.e96180

Liberate the power of biodiversity literature as FAIR digital objects

Auteurs: Agosti D, Bénichou L, Casino A et al.
Publié dans: Research Ideas and Outcomes, Numéro 10, 2024, Page(s) e126586
Éditeur: Pensoft Publishers
DOI: 10.3897/rio.10.e126586

Recommendations for use of annotations and persistent identifiers in taxonomy and biodiversity publishing

Auteurs: Donat Agosti; Laurence Benichou; Wouter Addink; Christos Arvanitidis; Terence Catapano; Guy Cochrane; Mathias Dillen; Markus Döring; Teodor Georgiev; Isabelle Gérard; Quentin Groom; Puneet Kishor; Andreas Kroh; Jiří Kvaček; Patricia Mergen; Daniel Mietchen; Joana Pauperio; Guido Sautter; Lyubomir Penev
Publié dans: Research Ideas and Outcomes, Numéro 8, 2022, Page(s) e97374
Éditeur: Pensoft Publishers
DOI: 10.3897/rio.8.e97374

ELIXIR – A distributed infrastructure for life science data

Auteurs: Chua P, Heil K, Maccallum P et al.
Publié dans: F1000, Numéro 12, 2023, Page(s) 1212, ISSN 2046-1402
Éditeur: F1000 Research Ltd.
DOI: 10.7490/f1000research.1119629.1

Network analysis of specimen co-collection

Auteurs: Meeus S, August T, Trekels M, Reyserhove L, & Groom QJ
Publié dans: BioHackrXiv Preprints, 2021
Éditeur: BioHackrXiv Preprints
DOI: 10.37044/osf.io/4ahng

Joint statement on best practices for the citation of authorities of scientific names in taxonomy by CETAF, SPNHC and BHL

Auteurs: Benichou L, Buschbom J, Campbell M, Hermann E, Kvacek J, Mergen P, Mitchell L, Rinaldo C, Agosti D
Publié dans: Research Ideas and Outcomes, Numéro 10, 2022, Page(s) 1-7
Éditeur: Pensoft Publishers
DOI: 10.3897/rio.8.e94338

Uniting FAIR data through interlinked, machine-actionable infrastructures

Auteurs: Penev L, Groom Q, Casino A et al.
Publié dans: Research Ideas and Outcomes, Numéro 10, 2024, Page(s) e126588
Éditeur: Pensoft Publishers
DOI: 10.3897/rio.10.e126588

Harmonizing person names in Biodiversity Informatics using Wikidata

Auteurs: Dillen M, Groom Q, Plank A
Publié dans: Zenodo, 2024
Éditeur: Zenodo
DOI: 10.5281/zenodo.11119497

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