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Neuronal microscopy for cell behavioural examination and manipulation

Deliverables

Project handbook

The operational procedures will be summarized in the Project Handbook a summary of procedures for management quality assurance and quality control reporting and cost follow up to all actors in the project so as to facilitate effective and efficient contribution and reporting while complying with the contractual framework and best management practices

Plans for dissemination of the results and training activities

The objective for this deliverable is to describe the dissemination strategy of the project REVEAL For example the dissemination strategy will rely onCreating the project visual identity and publishing the public dissemination materials via a dedicated project websiteDesigning and circulation of all templates for external communication by the partners ensuring that no patentable information is disclosedKeeping track of all project publications and public disclosuresInforming all the partners of related events and conferences and encourage participation in the most relevant onesRaise policy makers and scientific awareness via the use of social networks Twitter LinkedIn to spread the project results into the outside worldThe firts deliverable will be delivered on M12 and an update will be provided on M24 and M36

Project Data Management Plan

The Data Management Plan DMP will describe how REVEAL will collect process share and protect the data produced by the project partners The DMP will be consistent with the intellectual property right IPR policy ie IP confidentiality and publication provisions to be defined in the Consortium Agreement at the beginning of the project and updated as any changes occur in the consortium policies

Publications

CNN-Based Cell Analysis: From Image to Quantitative Representation

Author(s): Cédric Allier Lionel Hervé Chiara Paviolo1 Ondrej Mandula1 Olivier Cioni William Pierré1 Francesca Andriani Kiran Padmanabhan Sophie Morales
Published in: Frontiers in Physics, 2022, ISSN 0000-0000
Publisher: -
DOI: 10.3389/fphy.2021.776805

Towards true volumetric refractive index investigation in tomographic phase microscopy at the cellular level

Author(s): Maria Baczewska, Martyna Mazur, Wojciech Krauze
Published in: Optics Continuum, 2023, ISSN 0000-0000
Publisher: Optica
DOI: 10.1364/optcon.481162

Volumetric segmentation of biological cells and subcellular structures for optical diffraction tomography images

Author(s): Martyna Mazur, Wojciech Krauze
Published in: Biomedical Optics Express, 2023, ISSN 0000-0000
Publisher: Optica Publishing Group
DOI: 10.1364/boe.498275

3D time-lapse imaging of a mouse embryo using intensity diffraction tomography embedded inside a deep learning framework

Author(s): William Pierré, Lionel Hervé, Chiara Paviolo, Ondrej Mandula, Vincent Remondiere, Sophie Morales, Sergei Grudinin, Pierre F. Ray, Magali Dhellemmes, Christophe Arnoult, and Cédric Allier
Published in: Applied Optics, 2022, ISSN 0000-0000
Publisher: Optica Publishing Group
DOI: 10.1364/ao.453910

Roadmap on Digital Holography-Based Quantitative Phase Imaging

Author(s): Vinoth Balasubramani, Małgorzata Kujawinska, Cédric Allier, Vijayakumar Anand, Chau-Jern Cheng, Christian Depeursinge, Nathaniel Hai, Saulius Juodkazis, Jeroen Kalkman, Arkadiusz Ku´s, Moosung Lee, Pierre J. Magistretti, Pierre Marquet, Soon Hock Ng, Joseph Rosen, Yong Keun Park, Michał Ziemczonok
Published in: Journal of imaging, 2021, ISSN 2313-433X
Publisher: MDPI
DOI: 10.3390/jimaging7120252

Numerical refractive index correction for the stitching procedure in tomographic quantitative phase imaging

Author(s): Piotr Stępień, Michał Ziemczonok, Małgorzata Kujawińska, Maria Baczewska, Luca Valenti, Alessandro Cherubini, Elia Casirati, and Wojciech Krauze
Published in: Biomedical Optics Express, 2022, ISSN 0000-0000
Publisher: Optica Publishing Group
DOI: 10.1364/boe.466403

Phase unwrapping using deep learning in holographic tomography

Author(s): Michał Gontarz, Vibekananda Dutta, Małgorzata Kujawińska, Wojciech Krauze
Published in: Optics Express, 2023, ISSN 0000-0000
Publisher: Optica Publishing Group
DOI: 10.1364/oe.486984

Multiscale and multipurpose phantoms for 2D/3D quantitative phase imaging

Author(s): Michał Ziemczonok, Małgorzata Kujawińska
Published in: Proceedings of SPIE, 2023
Publisher: SPIE
DOI: 10.1117/12.2649720

Deep learning-based phase unwrapping for holographic tomography

Author(s): Michał Gontarz, Vibekananda Dutta, Małgorzata Kujawińska
Published in: 2023
Publisher: -

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