leveraging the European compute infrastructures for data-intensive research guided by FAIR principles

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EuroScienceGateway data management and contingency management plan

A data management plan (DMP) will be developed for the project, taking ethical and legal compliance measures into account, and incorporate all relevant project components from each work package. The DMP will evolve during the project and will be constantly updated. The consortium will enforce the use of open source licensed tools, packages and libraries, following the OSI recommendations. All scientific publications will be published Open Access and generated artefacts (tools, workflows), as well as services will be registered in EOSC supported registries.

Dissemination and exploitation plan

A dissemination and exploitation plan will be developed in the first months of the project and execute a communication strategy, including:●Develop and update the project website.●Blog regularly on the consortium website as well as through the channels of the consortium partners to reach out to all stakeholders.●Participate in user conferences.●Make use of well established community channels in Twitter and other social media to share relevant news, use cases and other novelties.●Fostering community building by identifying and promoting user success stories, e.g. achievements, papers that have been enabled by EuroScienceGateway.

Community onboarding cookbook published

Publication of Community onboarding cookbook

Publications

FAIR and Scalable Education

Auteurs: Anika Erxleben-Eggenhofer,Bérénice Batut,Teresa Müller
Publié dans: 1st Conference on Research Data Infrastructure, 2023
Éditeur: TIB
DOI: 10.52825/cordi.v1i.422

The Galaxy Platform: Applications to Catalysis Workflows

Auteurs: P. Austin, A. Gonzalez-Beltran and L. Liborio, from STFC, UKRI, UK. And A. Nieva de la Hidalga, from the UK Catalysis Hub, Research Complex at Harwell, UK
Publié dans: GALAXY PROJECT, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8114859

EuroScienceGateway: WP2 introduction

Auteurs: Stian Soiland-Reyes; Carole Goble
Publié dans: EOSC, 2022
Éditeur: EOSC
DOI: 10.5281/zenodo.7152762

Interactive Tools (IT) in Galaxy

Auteurs: Tunc Kayikcioglu University of Freiburg,Sanjay Kumar Srikakulam University of Freiburg, Wolfgang Maier University of Freiburg ,Björn Grüning University of Freiburg
Publié dans: 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities, 2023
Éditeur: TIB
DOI: 10.52825/cordi.v1i.419

Evaluating FAIR Digital Object and Linked Data as distributed object systems

Auteurs: Stian Soiland-Reyes, Carole Goble, Paul Groth
Publié dans: arXiv, 2023
Éditeur: CORNELL UNIVERSITY
DOI: 10.48550/arXiv.2306.07436

BioHackEU22 Report: Enhancing Research Data Management in Galaxy and Data Stewardship Wizard by utilising RO-Crates

Auteurs: Ignacio Eguinoa, Marek Suchánek, Vojtěch Knaisl, Jan Slifka, Paul De Geest, David López, Björn Grüning, Simone Leo, Stian Soiland-Reyes
Publié dans: BioHackrXiv, 2023
Éditeur: BioHackrXiv Preprints
DOI: 10.37044/osf.io/24jst

RO-Crate: packaging metadata love notes into FAIR Digital Objects

Auteurs: Carole Goble, Stian Soiland-Reyes
Publié dans: Helmholtz Metadata Collaboration | Conference 2022, 2022
Éditeur: HMC
DOI: 10.5281/zenodo.7147703

PLoS Biology

Auteurs: Saskia Hiltemann , Helena Rasche , Simon Gladman †, Hans-Rudolf Hotz, Delphine Larivière, Daniel Blankenberg, Pratik D. Jagtap, Thomas Wollmann, Anthony Bretaudeau, Nadia Goué, Timothy J. Griffin, Coline Ro
Publié dans: PLOS Computational Biology, 2023, ISSN 1544-9173
Éditeur: Public Library of Science
DOI: 10.1371/journal.pcbi.1010752

Integrative meta-omics in Galaxy and beyond

Auteurs: Valerie C. Schiml,Francesco Delogu,Praveen Kumar,Benoit Kunath,Bérénice Batut,Subina Mehta,James E. Johnson,Björn Grüning,Phillip B. Pope,Pratik D. Jagtap,Timothy J. Griffin,Magnus Ø. Arntzen
Publié dans: Environmental Microbiome, 2023, ISSN 2524-6372
Éditeur: BMC
DOI: 10.1186/s40793-023-00514-9

Genome Research - The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond

Auteurs: Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
Publié dans: Genome Research, 2023, ISSN 1088-9051
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.276963.122

Training Infrastructure as a Service

Auteurs: Helena Rasche,Cameron Hyde,John Davis,Simon Gladman,Nate Coraor,Anthony Bretaudeau,Gianmauro Cuccuru,Wendi Bacon,Beatriz Serrano-Solano,Jennifer Hillman-Jackson,Saskia Hiltemann,Miaomiao Zhou,Björn Grüning,Andrew Stubbs
Publié dans: Gigascience, 2023, ISSN 2047-217X
Éditeur: Oxford University Press
DOI: 10.1093/gigascience/giad048

Finding workflows in the Galaxy universe: integrating a global ecosystem using workflow registries

Auteurs: Gustafsson, Ove Johan Ragnar; Soranzo, Nicola; Gruening, Bjoern; van den Beek, Marius; Bacall, Finn; Goble, Carole; Zaib Khan, Farah; Price, Gareth; Ward, Nigel; Christiansen, Jeff
Publié dans: GALAXY AUSTRALIA, 2023
Éditeur: GALAXY AUSTRALIA
DOI: 10.5281/zenodo.8157531

An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy

Auteurs: Anup Kumar, Gianmauro Cuccuru, Björn Grüning, Rolf Backofen
Publié dans: Gigascience, 2023, ISSN 2047-217X
Éditeur: Oxford University Press
DOI: 10.1093/gigascience/giad028

Der europäische Galaxy-Server demokratisiert die Analyse biowissenschaftlicher Daten

Auteurs: Erxleben-Eggenhofer, Anika
Publié dans: Laborjournal, 2023, ISSN 1612-8354
Éditeur: LJ-Verlag Herfort und Sailer
DOI: 10.3030/101057388

Making workflow provenance FAIR across workflow systems with Workflow Run RO-Crate

Auteurs: Simone Leo; Laura Rodríguez-Navas; José M. Fernández; Paul De Geest; Luca Pireddu; Michael R. Crusoe; Daniel Garijo; Iacopo Colonnelli; Raül Sirvent; Stian Soiland-Reyes
Publié dans: F1000RESEARCH, 2023
Éditeur: F1000RESEARCH
DOI: 10.5281/zenodo.8004793

Enabling an operational, open and FAIR EOSC ecosystem

Auteurs: Sebastian Schaaf,Anika Erxleben-Eggenhofer, Björn Grüning, The EuroScienceGateway Project
Publié dans: F1000, 2023
Éditeur: ELIXIR
DOI: 10.7490/f1000research.1119627.1

EuroScienceGateway: robust, scalable, and integrated open infrastructure for data-driven research within EOSC

Auteurs: Volodymyr Savchenko
Publié dans: SKAO, 2023
Éditeur: SKAO

Using FAIR and Open Science practices to better understand vegetation browning in Troms and Finnmark (Norway)

Auteurs: Jean Iaquinta, Anne Fouilloux
Publié dans: ADS, 2023
Éditeur: ADS
DOI: 10.5194/egusphere-egu23-2579

Galaxy Genome Annotation: Galaxy as a platform for the annotation of genomes

Auteurs: Anthony Bretaudeau, Helena Rasche
Publié dans: GGA, 2023
Éditeur: F1000
DOI: 10.7490/f1000research.1119590.1

Galaxy and RDM

Auteurs: Sebastian Schaaf, Anika Erxleben-Eggenhofer, Bjoern Gruening
Publié dans: Vol. 1 (2023): 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities, 2023
Éditeur: 1st Conference on Research Data Infrastructure
DOI: 10.52825/cordi.v1i.421

Galaxy and Scientific Communities: How to Incorporate New Ones, Uplift Engaged Ones and Maintain Mature Ones

Auteurs: L. Liborio; P. Austin; A. Gonzalez-Beltran; E. Chadwick; V. Savchenko; A. Neronov; J. Iaquinta; A. Bretaudeau
Publié dans: PASC DAVOS, 2023
Éditeur: PASC DAVOS
DOI: 10.5281/zenodo.8114821

MuonGalaxy - tools, workflows and more for muons and materials science

Auteurs: Austin, Patrick; Davies, Joel; Gonzalez-Beltran, Alejandra; Liborio, Leandro
Publié dans: GALAXY PROJECT, 2023
Éditeur: GALAXY PROJEC
DOI: 10.5281/zenodo.8116071

Making EOSC Research Objects FAIR with RO-Crate: A common metadata overlay for EOSC repositories

Auteurs: Justin Clark-Casey; Stian Soiland-Reyes
Publié dans: EOSC, 2022
Éditeur: EOSC
DOI: 10.5281/zenodo.7323480

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