Biodiversity Digital Twin for Advanced Modelling, Simulation and Prediction Capabilities

Project Information

BioDT

Grant agreement ID: 101057437

DOI

10.3030/101057437

Project closed

EC signature date 31 May 2022

Start date 1 June 2022

End date 31 May 2025

Funded under

• Research infrastructures

Total cost

€ 11 059 061,00

EU contribution

€ 11 059 061,00

Coordinated by

CSC-TIETEEN TIETOTEKNIIKAN KESKUS OY
Finland

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (36)

A digital twin for real-time biodiversity forecasting with citizen science data

Author(s): Otso Ovaskainen, Steven Winter, Gleb Tikhonov, Patrik Lauha, Ari Lehtiö, Ossi Nokelainen, Nerea Abrego, Anni Aroluoma, Jesse Patrick Harrison, Mikko Heikkinen, Aleksi Kallio, Anniina Koliseva, Aleksi Lehikoinen, Tomas Roslin, Panu Somervuo, Allan Tainá Souza, Jemal Tahir, Jussi Talaskivi, Alpo Turunen, Aurélie Vancraeyenest, Gabriela Zuquim, Hannu Autto, Jari Hänninen, Jasmin Inkinen, Outa Kalttopää, Janne Koskinen, Matti Kotakorpi, Kim Kuntze, John Loehr, Marko Mutanen, Mikko Oranen, Riku Paavola, Risto Renkonen, Pauliina Schiestl-Aalto, Mikko Sipilä, Maija Sujala, Janne Sundell, Saana Tepsa, Esa-Pekka Tuominen, Joni Uusitalo, Mikko Vallinmäki, Emma Vatka, Silja Veikkolainen, Phillip C. Watts, David Dunson
Published in: Nature Ecology & Evolution, 2026, ISSN 2397-334X
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41559-025-02966-3

Dataspace Integration for Agrobiodiversity Digital Twins with RO-Crate

Author(s): Claus Weiland, Jonas Grieb, Daniel Bauer, Desalegn Chala, Erik Kusch, Carrie Andrew, Dag Endresen
Published in: Biodiversity Information Science and Standards, Issue 8, 2024, ISSN 2535-0897
Publisher: Pensoft Publishers
DOI: 10.3897/BISS.8.134479

Evaluating FAIR Digital Object and Linked Data as distributed object systems

Author(s): Soiland-Reyes S, Goble C, Groth P.
Published in: PeerJ Comput Sci, 2024, ISSN 2376-5992
Publisher: San Diego CA: PeerJ Inc
DOI: 10.48550/arXiv.2306.07436

Prototype biodiversity digital twin: Forest biodiversity dynamics

Author(s): Afsar B, Eyvindson K, Rossi T, Versluijs M, Ovaskainen O
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/rio.10.e125086

rdata: A Python library for R datasets

Author(s): Carlos Ramos-Carreño, Tuomas Rossi
Published in: Journal of Open Source Software, Issue 9, 2024, ISSN 2475-9066
Publisher: Journal of Open Source Software
DOI: 10.21105/JOSS.07540

High-resolution spatiotemporal forecasting of the European crane migration

Author(s): De Koning K, Nilsson L, Månsson J, Ovaskainen O, Kranstauber B, Arp M, Schakel JK
Published in: Ecological Modelling, Issue 498, 2024, ISSN 0304-3800
Publisher: Elsevier BV
DOI: 10.1016/j.ecolmodel.2024.110884

Prototype biodiversity digital twin: honey bees in agricultural landscapes

Author(s): Groeneveld V, Martinovic T, Rossi T, Salamon O, Sara-aho K, Grimm V
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/rio.10.e125167

Expanding the Scope of the Bumblebee Model <scp>BEE</scp>‐<scp>STEWARD</scp>: A Simple Foraging Module Facilitates the Parameterization

Author(s): Max Luttermann, Reinhard Prestele, Volker Grimm, Jürgen Groeneveld
Published in: Ecology and Evolution, Issue 15, 2025, ISSN 2045-7758
Publisher: Wiley
DOI: 10.1002/ECE3.71468

Prototype Digital Twin: Recreation and biodiversity cultural ecosystem services

Author(s): Rolph S, Andrews C, Carbone D, Lopez Gordillo J, Martinovič T, Oostervink N, Pleiter D, Sara-aho K, Watkins J, Wohner C, Bolton W, Dick J
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/ARPHAPREPRINTS.E125515

TwinEco: A unified framework for dynamic data-driven digital twins in ecology

Author(s): Taimur Khan, Koen de Koning, Dag Endresen, Desalegn Chala, Erik Kusch
Published in: Ecological Informatics, Issue 91, 2025, ISSN 1574-9541
Publisher: Elsevier BV
DOI: 10.1016/J.ECOINF.2025.103407

A Mobile Application–Based Citizen Science Product to Compile Bird Observations

Author(s): Ossi Nokelainen, Patrik Lauha, Sebastian Andrejeff, Jari Hänninen, Jasmin Inkinen, Aleksi Kallio, Harry J. Lehto, Marko Mutanen, Riku Paavola, Pauliina Schiestl-Aalto, Panu Somervuo, Janne Sundell, Jussi Talaskivi, Mikko Vallinmäki, Aurélie Vancraeyenest, Ari Lehtiö, Otso Ovaskainen
Published in: Citizen Science: Theory and Practice, Issue 9, 2024, ISSN 2057-4991
Publisher: Ubiquity Press, Ltd.
DOI: 10.5334/CSTP.710

Digital twins: dynamic model-data fusion for ecology

Author(s): de Koning K, Broekhuijsen J, Kühn I, Ovaskainen O, Taubert F, Endresen D, Schigel D, Grimm V
Published in: Trends in Ecology & Evolution, Issue 38, 2023, ISSN 0169-5347
Publisher: Elsevier BV
DOI: 10.1016/J.TREE.2023.04.010

The role of seasonality in shaping the interactions of honeybees with other taxa

Author(s): Helena Wirta, Mirkka Jones, Pablo Peña‐Aguilera, Camilo Chacón‐Duque, Eero Vesterinen, Otso Ovaskainen, Nerea Abrego, Tomas Roslin
Published in: Ecology and Evolution, Issue 13, 2023, ISSN 2045-7758
Publisher: Wiley
DOI: 10.1002/ECE3.10580

Prototype Biodiversity Digital Twin: Real-time bird monitoring with citizen-science data

Author(s): Ovaskainen O, Lauha P, Lopez Gordillo J, Nokelainen O, Rahman AU, Souza AT, Talaskivi J, Tikhonov G, Vancraeyenest A, Lehtiö A
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/ARPHAPREPRINTS.E124640

Recording provenance of workflow runs with RO-Crate

Author(s): Leo S, Crusoe M, Rodríguez-Navas L, Sirvent R, Kanitz A, De Geest P, Wittner R, Pireddu L, Garijo D, Fernández J, Colonnelli I, Gallo M, Ohta T, Suetake H, Capella-Gutierrez S, de Wit R, Kinoshita B, Soiland-Reyes S
Published in: PLOS One, Issue 19(9), 2024, ISSN 1932-6203
Publisher: PLOS
DOI: 10.48550/ARXIV.2312.07852

Prototype biodiversity digital twin: crop wild relatives genetic resources for food security

Author(s): Chala D, Kusch E, Weiland C, Andrew C, Grieb J, Rossi T, Martinovic T, Endresen D
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/rio.10.e125192

Brood indicators are an early warning indicator of honey bee colony loss — a simulation-based study

Author(s): Groeneveld J, Odemer R, Requier F
Published in: PLoS One, Issue 19, 2024, ISSN 1932-6203
Publisher: Public Library of Science (PLOS)
DOI: 10.1371/journal.pone.0302907

Prototype biodiversity digital twin: disease outbreaks

Author(s): Ingenloff K, Ben Aziza S, Weiland C, Nikolova N, Thulke H-H, Lange M, Reichold A, Schigel D
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/rio.10.e125521

Prototype Biodiversity Digital Twin: grassland biodiversity dynamics

Author(s): Taubert F, Rossi T, Wohner C, Venier S, Martinovič T, Khan T, Gordillo J, Banitz T
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/ARPHAPREPRINTS.E125077

Prototype Biodiversity Digital Twin: Phylogenetic Diversity

Author(s): Mikryukov V, Abarenkov K, Jeppesen TS, Schigel D, Frøslev T
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/rio.10.e124988

FDO as an Interoperability Framework for the Biodiversity Digital Twin Project

Author(s): Julian Lopez Gordillo, Sharif Islam
Published in: Open Conference Proceedings, Issue 5, 2025, ISSN 2749-5841
Publisher: TIB Open Publishing
DOI: 10.52825/OCP.V5I.1190

WorkflowHub: a registry for computational workflows

Author(s): Ove Johan Ragnar Gustafsson, Sean R. Wilkinson, Finn Bacall, Stian Soiland-Reyes, Simone Leo, Luca Pireddu, Stuart Owen, Nick Juty, José M. Fernández, Tom Brown, Hervé Ménager, Björn Grüning, Salvador Capella-Gutierrez, Frederik Coppens, Carole Goble
Published in: Scientific Data, Issue 12, 2025, ISSN 2052-4463
Publisher: Springer Nature Limited
DOI: 10.48550/ARXIV.2410.06941

Experimental evidence that root‐associated fungi improve plant growth at high altitude

Author(s): Skylar Burg; Otso Ovaskainen; Brendan Furneaux; Natalia Ivanova; Arusyak Abrahamyan; Pekka Niittynen; Panu Somervuo; Nerea Abrego
Published in: Molecular Ecology, Issue 33, 2024, ISSN 1365-294X
Publisher: Wiley
DOI: 10.1111/MEC.17376

Prototype Biodiversity Digital Twin: Invasive Alien Species

Author(s): Khan T, El-Gabbas A, Golivets M, Souza AT, Gordillo J, Kierans D, Kühn I
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/rio.10.e124579

Implementing FAIR Semantic Mappings Leveraging on RO-Crate

Author(s): Jonas Grieb, Claus Weiland, Alexander Wolodkin, Julian Lopez Gordillo, Sharif Islam
Published in: Open Conference Proceedings, Issue 5, 2025, ISSN 2749-5841
Publisher: TIB Open Publishing
DOI: 10.52825/OCP.V5I.1179

Bridging Data Standards and FAIR Principles in Biodiversity Digital Twinning: Prototyping, Challenges, Lessons Learned, and Future Plans

Author(s): Sharif Islam, Julian Lopez Gordillo, Dag Endresen, Carrie Andrew
Published in: Biodiversity Information Science and Standards, Issue 8, 2024, ISSN 2535-0897
Publisher: Pensoft Publishers
DOI: 10.3897/BISS.8.133089

Enhancing data integration with existing FAIR enabling resources: a case for using the Darwin Core and its extensions to integrate eLTER biosphere data with other biodiversity data

Author(s): Kate Ingenloff
Published in: ARPHA Conference Abstracts, Issue 8, 2025, ISSN 2603-3925
Publisher: Pensoft Publishers
DOI: 10.3897/ACA.8.E151692

FAIR Digital Twins for Biodiversity: Enabling Data, Model, and Workflow Integration

Author(s): Sharif Islam, Hanna Koivula, Carrie Andrew, Julian Lopez Gordillo, Claus Weiland, Dmitry Schigel, Dag Endresen, Christos Arvanitidis, Eli Chadwick & Stian Soiland-Reyes
Published in: npj Biodiversity, 2026, ISSN 2731-4243
Publisher: npj Biodiversity - Nature
DOI: 10.1038/S44185-025-00116-3

Building Biodiversity Digital Twins

Author(s): Dmitry Schigel
Published in: Biodiversity Information Science and Standards, Issue 8, 2024, ISSN 2535-0897
Publisher: Pensoft Publishers
DOI: 10.3897/BISS.8.139100

Fragmented Networks: Challenges in communication and cohesion of European Biodiversity Research Infrastructures

Author(s): Souza A, Martinovič T, Andrew C, Gan Y-M, Kusch E
Published in: Biodiversity Data Journal, Issue 13, 2025, ISSN 1314-2828
Publisher: Pensoft
DOI: 10.5281/ZENODO.13903241

Digital twin challenges in biodiversity modelling

Author(s): Trantas A, Plug R, Pileggi P, Lazovik E
Published in: Ecological Informatics, Issue 78, 2023, ISSN 1574-9541
Publisher: Elsevier BV
DOI: 10.1016/j.ecoinf.2023.102357

Prototype Biodiversity Digital Twin: prioritisation of DNA metabarcoding sampling locations

Author(s): Frøslev T, Boyd R, Schigel D
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft
DOI: 10.3897/rio.10.e124978

Identifying key components for multiobjective forest management decisions: A case study of state-owned Finnish forests

Author(s): Bekir Afsar, Johanna Silvennoinen, Kyle Eyvindson, Kaisa Miettinen, Otso Ovaskainen
Published in: Forest Policy and Economics, Issue 182, 2026, ISSN 1389-9341
Publisher: Elsevier BV
DOI: 10.1016/J.FORPOL.2025.103681

Graphical User Interface for Biodiversity Digital Twins: Data Challenges

Author(s): Tomáš Martinovič, Kata Sara-aho, Ondrej Salamon, Simon Rolph, Allan Souza
Published in: Biodiversity Information Science and Standards, Issue 8, 2024, ISSN 2535-0897
Publisher: Pensoft Publishers
DOI: 10.3897/BISS.8.135092

Developing Prototype Digital Twins for biodiversity conservation and management: achievements, challenges and perspectives

Author(s): Damien Lecarpentier, Timea Biro, Dag Endresen, Marina Golivets, Volker Grimm, Sharif Islam, Hanna Koivula, Dirk Pleiter, Tuomas Rossi, Dmitry Schigel, Christoph Wohner, Gabriela Zuquim, Jesse Harrison
Published in: Research Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft Publishers
DOI: 10.3897/RIO.10.E133474

Accelerating joint species distribution modelling with Hmsc-HPC by GPU porting

Author(s): Anis Ur Rahman, Gleb Tikhonov, Jari Oksanen, Tuomas Rossi, Otso Ovaskainen
Published in: PLOS Computational Biology, Issue 20, 2024, ISSN 1553-7358
Publisher: Public Library of Science (PLoS)
DOI: 10.1371/JOURNAL.PCBI.1011914

Other (55)

"Presentation ""Digital Twin Empowered Biodiversity Conservation: Sustainable Forest Management"", presented at the World Biodiversity Forum 2024"

Author(s): Afsar B, Versluijs M, Eyvindson K, Ovaskainen O
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/ZENODO.15623398

"Abstract ""Digital twin enabled forest management with multiobjective optimization"", IBFRA 2023: Climate resilient and sustainable forest management"

Author(s): Afsar B, Eyvindson K, Versluijs M, Ovaskainen O
Published in: IBFRA Conference 2023: Book of abstracts, Issue 77, 2023, ISSN 2342-7639
Publisher: Natural Resources Institute Finland (Luke)

"Abstract ""Can hive weight from monitoring campaigns (TRACHTNET) be predicted by land cover products and weather data?"", 71. Jahrestagung der Arbeitsgemeinschaft der Institute für Bienenforschung e.V."

Author(s): Groeneveld J, Wendt A, Grimm V
Published in: Book of Abstracts of 71. Jahrestagung der Arbeitsgemeinschaft der Institute für Bienenforschung e.V., 2024
Publisher: Association of the German Bee Research Institutes

Survey and Monitoring Data Quick-Start Guide A how-to for updating a Darwin Core dataset using the Humboldt Extension

Author(s): Ingenloff K
Published in: 2025
Publisher: GBIF Secretariat: Copenhagen
DOI: 10.35035/DOC-7T3P-VE38

"Presentation ""Adapting the Digital Twin Paradigm to the Requirements of Biodiversity"", presented at the World Biodiversity Forum 2024"

Author(s): Nikolova N & Brewster C
Published in: 2025
Publisher: Zenodo
DOI: 10.5281/ZENODO.15601987

"Abstract ""Mapping.bio: Piloting FAIR semantic mappings for biodiversity digital twins"", TDWG 2023"

Author(s): Wolodkin A, Weiland C, Grieb J 
Published in: Biodiversity Information Science and Standards , Issue 7, 2023, ISSN 2535-0897
Publisher: Pensoft
DOI: 10.3897/BISS.7.111979

"Poster ""Creating lightweight FAIR Digital Objects with RO-Crate and FAIR Signposting"", 1st International Conference on FAIR Digital Objects"

Author(s): Soiland-Reyes S, Sefton P, Castro LJ, Coppens F, Garijo D, Leo S, Portier M, Groth P, Goble C
Published in: 1st International Conference on FAIR Digital Objects, Issue 1ST, 2022
Publisher: Zenodo
DOI: 10.5281/zenodo.7245315

Guide for publishing biological survey data to GBIF

Author(s): Ingenloff K, Svenningsen C, Earl C, Shimabukuro PHF, Sica Y, Gan Y-M, Kachian ZR, Brenton P, Hochachka W, Wieczorek J, Stevenson R, Kazem A, Baskauf S, Zermoglio PF, Bloom D, Rodrigues A, Gamboa Martínez J & Schigel D.
Published in: 2025
Publisher: GBIF Secretariat: Copenhagen
DOI: 10.35035/DOC-YNVS-EH84

"Presentation ""TwinEco: A unified framework for dynamic data-driven digital twins in ecology"", presentation of the TwinEco paper at the World Biodiversity Forum 2024"

Author(s): Khan T
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/ZENODO.15575560

"Abstract ""Die Honigbiene in Agrarlandschaften: Simulationen mit dem Model BEEHAVE"", Bienen und Landwirtschaft: Strategiekonferen 2024"

Author(s): Groeneveld J, Grimm V
Published in: Book of Abstracts of Strategiekonferenz der Deutschen Agrarforschungsallianz, 2024
Publisher: Deutsche Agrarforschungsallianz (DAFA)

"Presentation ""Building diverse collections using RO-Crate"", ELIXIR All Hands 2023"

Author(s): Soiland-Reyes S, Goble C
Published in: ELIXIR All Hands 2023, 2023
Publisher: F1000Research
DOI: 10.7490/f1000research.1119466.1

"Abstract ""Data Standards and Interoperability Challenges for Biodiversity Digital Twin: A novel and transformative approach to biodiversity research and application"", TDWG 2023"

Author(s): Islam S, Koivula H, Endresen D, Kusch E, Schigel D, Addink W 
Published in: Biodiversity Information Science and Standards, Issue 7, 2023, ISSN 2535-0897
Publisher: Pensoft
DOI: 10.3897/BISS.7.112373

"Abstract ""The Importance of Interoperability in European Research Infrastructures"", ACCC-FASN Science Conference 2023"

Author(s): Souza A, Rasilo T, Bäck J 
Published in: Report Series Aerosol Science, Abstract Book of the ACCC-FASN Science Conference 2023, Issue 271, 2023, ISSN 2814-4236
Publisher: The Finnish Association for Aerosol Research (FAAR)

"Poster ""Biodiversity Digital Twin: Implementation Status and Extension Opportunities"", 2nd Destination Earth User eXchange"

Author(s): Harrison J, Aalto T, Oostervink N, Geenen T
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/zenodo.12722280

"Poster ""eLTER and BioDT: Creating Interactive Digital Twins with R Shiny"", presented at eLTER Consortia meeting, 3-7 June 2024"

Author(s): Souza A., Sara-aho K, Rolph S, Salamon O, Martinovič T
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/ZENODO.15269900

"Abstract ""Connecting people and nature to ensure resilient landscapes"", BES Symposium 2024"

Author(s): Dick J, Rolph S, Andrews C
Published in: Resilient Landscapes for People, Nature Climate. BES Symposium Book of Abstracts, 2024
Publisher: British Ecological Society (BES)

"Poster ""Biodiversity Digital Twin: Advancing predictive biodiversity modelling"", 3rd Destination Earth User eXchange"

Author(s): Aalto T, Sara-aho K, Zuquim G, Pleiter D, Geenen T
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/ZENODO.13938825

BioDT poster at ISC High Performance 2023

Author(s): Martinovic T, Drago F
Published in: ISC High Performance 2023, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.8033683

"Abstract ""Transforming Knowledge into Practice: Science, Technology and Innovation in Support of the UN SDGs"", Science Summit 2024"

Author(s): Arvanitidis C, Barov B, Basset A, Deneudt K, González Ferreiro M, Drago F, Huertas Olivares C, Kirrane D, Koureas D, Manola N, Mietchen D, Pade N, Penev L, Zuquim G, Ioannidis Y
Published in: Reseach Ideas and Outcomes, Issue 10, 2024, ISSN 2367-7163
Publisher: Pensoft

"Presentation ""Designing Dynamic Data-Driven Digital Twin Systems in Ecology"" from the same-titled workshop at ECEM 2023"

Author(s): Khan T
Published in: 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.8313904

Metabarcoding Data Toolkit – user guide

Author(s): Frøslev T
Published in: 2025
Publisher: GBIF Secretariat: Copenhagen
DOI: 10.35035/DOC-WKPC-M352

"Presentation ""Biodiversity Digital Twin for Advanced Modelling, Simulation and Prediction Capabilities"", presented at the Netherlands Biodiversity Information Facility (NLBIF) Day 2023"

Author(s): Islam S
Published in: Biodiversity Digital Twin for Advanced Modelling, Simulation and Prediction Capabilities, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.8144429

"Abstract ""Mobilising Long-Term Natural Environment and Biodiversity Data and Exposing it for Federated, Semantic Queries"", TDWG 2023"

Author(s): Koivula H, Wohner C, Magagna B, d`Aragona P, Oggioni A 
Published in: Biodiversity Information Science and Standards , Issue 7, 2023, ISSN 2535-0897
Publisher: Pensoft
DOI: 10.3897/BISS.7.112221

"Presentation of the Crop Wild Relative use case: ""Crop wild relatives Digital Twin: where data flow meets computation to revolutionize agricultural research"", Living Norway Colloquium 2023"

Author(s): Chala, D
Published in: Living Norway Colloquium 2023, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.8040132

"Abstract of conference paper ""Digital Twin and Foundation Models: A New Frontier"", 16th International Conference on Agents and Artificial Intelligence (ICAART 2024)"

Author(s): Trantas A & Pileggi P
Published in: ICAART 2024 Final Program and Book of Abstracts, 2024
Publisher: SCITEPRESS - Science and Technology Publications

"Presentation ""Updating Linked Data practices for FAIR Digital Object principles"", 1st International Conference on FAIR Digital Objects"

Author(s): Soiland-Reyes S, Castro LJ, Garijo D, Portier M, Goble C, Groth P
Published in: 1st International Conference on FAIR Digital Objects, Issue 1ST, 2022
Publisher: Zenodo
DOI: 10.5281/zenodo.7256428

"Abstract and presentation ""Monitoring and protecting biodiversity with Digital Twins"", ECEM 2023"

Author(s): Taubert F, De Bakke M, Banitz T, Grimm V, Groeneveld J, Ovaskainen O
Published in: ECEM 2023 Book of Abstracts, 2023
Publisher: Helmholtz Centre for Environmental Research GmbH (UFZ)
DOI: 10.5281/ZENODO.15553252

"Presentation ""The Digital Twin Paradigm for Biodiversity Research Data"" at FAIR Digital Objects Forum lecture Concept of Digital Twins /Surrogates"

Author(s): Islam S
Published in: FAIR Digital Objects Forum lecture Concept of Digital Twins /Surrogate, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.7852889

Biodiversity data standards for the organization and dissemination of complex research projects and digital twins: a guide

Author(s): Andrew C, Islam S, Weiland C, Endresen D
Published in: 2024, ISSN 2331-8422
Publisher: ArXiv / Cornell University
DOI: 10.48550/ARXIV.2405.19857

"Poster ""The Importance of Interoperability in European Research Infrastructures"", ACCC-FASN Science Conference 2023"

Author(s): Souza A, Rasilo T, Bäck J
Published in: 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.10203382

"Poster ""FAIR Dataspace Integration for Agrobiodiversity Digital Twins"", 3rd Destination Earth User eXchange"

Author(s): Bauer D, Kusch E, Weiland C, Grieb J, Chala D, Endresen D 
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/ZENODO.13928655

"Poster ""Upscaling Biodiversity Modelling from Laptops to Supercomputers"" presented at the 2025 Nordic-RSE conference"

Author(s): Rossi T & Martinovič T 
Published in: 2025
Publisher: Zenodo
DOI: 10.5281/ZENODO.15536282

"Poster ""Making workflow provenance FAIR across workflow systems with Workflow Run RO-Crate"", ELIXIR All Hands 2023"

Author(s): Leo S, Rodríguez-Navas L, Fernández JM, De Geest P, Pireddu L, Crusoe MR, Garijo D, Colonnelli I, Sirvent R, Soiland-Reyes S
Published in: 2023
Publisher: Zenodo
DOI: 10.5281/ZENODO.8004793

"Abstract ""Towards a digital twin to simulate bee health for Germany"", High Performance Computing Conference 2023"

Author(s): Groeneveld J, Krebs J, Martinovic T, Rossi T, Wendt A, Grimm V
Published in: NHR Conference '23 Book of Abstracts, 2023
Publisher: National High Performance Computing (NHR Alliance)

"Presentation ""How can we better understand the impact of global change on bees using mechanistic simulation models and monitoring campaigns?"" presented at the GfÖ 2024 Annual Meeting"

Author(s): Groeneveld, J.
Published in: 2025
Publisher: Zenodo
DOI: 10.5281/ZENODO.15409988

"Poster ""Digital twin linking cultural ecosystem services of recreational potential and biodiversity in the Cairngorms National Park"", workshop Assessing and Preserving Soundscapes in National Parks"

Author(s): Dick J, Rolph S, Andrews C, Watkins J
Published in: workshop at Cairngorms National Park, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.8038537

"Presentation ""Challenges in Data and Model Integration for Biodiversity Digital Twin Applications"", presented at the ELIXIR Biodiversity Community (monthly meeting), 23 October 2024 "

Author(s): Islam S
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/ZENODO.13982672

"Presentation ""Biodiversity Digital Twin for Advanced Modelling, Simulation and Prediction Capabilities"", presented at eLTER Consortia meeting 2024"

Author(s): Zuquim G
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/ZENODO.12166859

"Presentation ""Overview of FAIR data publishing with bioschemas & RO-Crate"", ELIXIR All Hands 2023"

Author(s): Soiland-Reyes S, Castro LJ
Published in: Overview of FAIR data publishing with bioschemas & RO-Crate, 2023
Publisher: F1000 Research
DOI: 10.7490/f1000research.1119459.1

"Presentation ""A digital twin linking recreational potential and biodiversity in the Cairngorms National Park"", workshop Assessing and Preserving Soundscapes in National Parks"

Author(s): Dick J, Andrews C, Rolph S, Watkins J
Published in: A digital twin linking recreational potential and biodiversity in the Cairngorms National Park, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.8038203

"Presentation ""Digitalisation for Sustainable Nature"", presented for the European Environment Agency"

Author(s): Broekhuijsen, J
Published in: Digitalisation for Sustainable Nature, 2022
Publisher: Zenodo
DOI: 10.5281/zenodo.8135415

"Poster ""Simulating the effect of landscape structure and land use change on honey bee vitality for Germany"", 2023 Annual meeting of the Ecological Society (GfÖ)"

Author(s): Groeneveld J, Krebs J, Martinovic T, Rossi T, Wendt A, Grimm V
Published in: 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.12580924

BioDT poster at EuroHPC Summit 2023

Author(s): Drago, Federico; Pleiter, Dirk; Martinovic, Tomas
Published in: EuroHPC 2023, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.7754745

"Presentation ""A Digital Twin of grassland ecosystems"", presented at the World Biodiversity Forum 2024"

Author(s): Taubert F, Banitz T, Rossi T, Wohner C, Venier S, Martinovič T, Khan T, Lopez Gordillo, J
Published in: 2025
Publisher: Zenodo

"Abstract ""eLTER and its role of providing in-situ data to large scale research projects for modelling biodiversity dynamics"", EGU General Assembly 2024"

Author(s): Wohner C, Oggioni A, Tagliolato P, Taubert F, Banitz T, Venier S, Trembath P and Peterseil J
Published in: 2024
Publisher: European Geosciences Union (EGU)
DOI: 10.5194/egusphere-egu24-1555

"Poster ""Sharing data as machine-actionable objects using RO-Crate, Bioschemas and Signposting"", ELIXIR All Hands 2023"

Author(s): Soiland-Reyes S, Leo S, Castro LJ, Sefton P, Goble C
Published in: ELIXIR, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.8004796

"Presentation ""Show and Tell: BioDT and DISSCo Perspective"" at FAIR-IMPACT Workshop: Why Mappings Matter and how to make them FAIR?"

Author(s): Le Franc Y,  Harmse H, De Santis L, Jeffery K, Matentzoglu N, Weiland C
Published in: 2023
Publisher: Zenodo
DOI: 10.5281/ZENODO.8162873

"Presentation ""Sharing research artefacts as FAIR Digital Objects using RO-Crate"", presented at Brookhaven National Laboratory"

Author(s): Goble C, Soiland-Reyes S
Published in: Sharing research artefacts as FAIR Digital Objects using RO-Crate, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.7915818

"Presentation materials ""Building diverse FDO Collections using RO-Crate: An overview of the RO-Crate concept and its implementations"" from FAIR Digital Object Forum workshop Defining FDO Collections"

Author(s): Soiland-Reyes S, Goble C
Published in: Building diverse FDO Collections using RO-Crate: An overview of the RO-Crate concept and its implementations, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.7915603

"Poster ""Applying the Digital Twin Concept to Ecological Reality: Challenges and Lessons Learned"", BES Annual Meeting 2024"

Author(s): Rolph, S., Andrews, C., Carbone, D., Gordillo, J. L., Martinovič, T., Oostervink, N., Pleiter, D., Sara-aho, K., Wohner, C., Williams, M., Tigli, M., Marsh Rossney, J., Watkins, J., & Dick, J.
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/ZENODO.14331464

"Abstract ""Modelling Research Expeditions in Wikidata: Best Practice for Standardisation and Contextualisation"", TDWG 2023"

Author(s): von Mering S, Braun PJ-C, Cubey RWN, Groom Q, Haston EM, Hendriksen A, Johaadien R, Leachman S, Marsden L, Rainer H, Santos J, Endresen D
Published in: Biodiversity Information Science and Standards , Issue 7, 2023, ISSN 2535-0897
Publisher: Pensoft
DOI: 10.3897/biss.7.111427

"Abstract ""How do honeybees respond to landscape structure and other stressors?"", ECEM 2023"

Author(s): Groeneveld J, Wendt A, Krebs J, Grimm V
Published in: ECEM 2023 Book of Abstracts, 2023
Publisher: Helmholtz Centre for Environmental Research GmbH (UFZ)

"Presentation ""Utilizing digital twins for crop wild relatives: advancing food security and conservation efforts"", Nordic stakeholder workshop Long-term Conservation and Access to Nordic Crop Wild Relatives"

Author(s): Chala, D
Published in: 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.10055794 

"Abstract ""From data pipelines to FAIR data infrastructures: A vision for the new horizons of bio- and geodiversity data for scientific research"", 1st International Conference on FAIR Digital Objects"

Author(s): Islam S, Weiland C, Addink W
Published in: Research Ideas and Outcomes, Issue 8, 2022, ISSN 2367-7163
Publisher: Pensoft Publishers
DOI: 10.3897/RIO.8.E93816

"Presentation ""FAIR Data and Models in Biodiversity Digital Twins"", presented at the World Biodiversity Forum 2024"

Author(s): Islam S
Published in: 2025
Publisher: Zenodo
DOI: 10.5281/ZENODO.15553776

Conference proceedings (4)

Visualization Techniques and Tools for Developing Digital Twins of Ecosystems: State-of-the-Art and Selection

Author(s): Ashraf, Adeela; Belleman, Robert; Zhao, Zhiming
Published in: 2023 IEEE Smart World Congress (SWC), 2024
Publisher: IEEE
DOI: 10.1109/SWC57546.2023.10448753

Realising Distributed Digital Twins within Federated Digital Infrastructures

Author(s): Kierans D & Pleiter D
Published in: Proceedings of the First International Workshop on Distributed Digital Twins (DiDit 2024) co-located with the 19th International Federated Conference on Distributed Computing Techniques (DisCoTec 2024), Issue Vol 3755, 2024, ISSN 1613-0073
Publisher: CEUR Workshop Proceedings, CEUR-WS.org

Uncertainty Quantification for Metamodels

Author(s): Okánik M, Trantas A, de Bakker M.P, Lazovik E
Published in: Proceedings of the Thirteenth Symposium on Conformal and Probabilistic Prediction with Applications, Issue 230, 2024, ISSN 2640-3498
Publisher: ML Research Press

Digital Twin and Foundation Models: A New Frontier

Author(s): Trantas A & Pileggi P
Published in: Proceedings of the 16th International Conference on Agents and Artificial Intelligence , Issue 3, 2024, ISSN 2184-433X
Publisher: SCITEPRESS - Science and Technology Publications
DOI: 10.5220/0012427000003636