Biodiversity Digital Twin for Advanced Modelling, Simulation and Prediction Capabilities

Livrables

The DMP will evolve during the lifetime of the project in order to present the status of the projects reflections on data management

Plan for dissemination & exploitation including communication activities

This report presents the plan for targeted engagement and all outreach exploitation and communication strategies

Architecture and implementation plan

Describes the architecture for the Digital Twin platform core components and shared services Documents information security practices and more detailed implementation plan

Publications

"Article ""Evaluating FAIR Digital Object and Linked Data as distributed object systems"""

Auteurs: Soiland-Reyes Stian, Goble C, Groth P
Publié dans: 2023
Éditeur: ArXiV
DOI: 10.48550/arXiv.2306.07436

"Poster ""Creating lightweight FAIR Digital Objects with RO-Crate and FAIR Signposting"", 1st International Conference on FAIR Digital Objects"

Auteurs: Soiland-Reyes S, Sefton P, Castro LJ, Coppens F, Garijo D, Leo S, Portier M, Groth P, Goble C
Publié dans: 2022
Éditeur: Zenodo
DOI: 10.5281/zenodo.7245315

"Presentation ""Building diverse collections using RO-Crate"", ELIXIR All Hands 2023"

Auteurs: Soiland-Reyes S, Goble C
Publié dans: 2023
Éditeur: F1000Research
DOI: 10.7490/f1000research.1119466.1

BioDT poster at ISC High Performance 2023

Auteurs: Martinovic T, Drago F
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8033683

"Presentation ""Biodiversity Digital Twin for Advanced Modelling, Simulation and Prediction Capabilities"", presented at the Netherlands Biodiversity Information Facility (NLBIF) Day 2023"

Auteurs: Islam S
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8144429

"Presentation of the Crop Wild Relative use case: ""Crop wild relatives Digital Twin: where data flow meets computation to revolutionize agricultural research"", Living Norway Colloquium 2023"

Auteurs: Chala, D
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8040132

"Presentation ""Updating Linked Data practices for FAIR Digital Object principles"", 1st International Conference on FAIR Digital Objects"

Auteurs: Soiland-Reyes S, Castro LJ, Garijo D, Portier M, Goble C, Groth P
Publié dans: 2022
Éditeur: Zenodo
DOI: 10.5281/zenodo.7256428

"Presentation ""The Digital Twin Paradigm for Biodiversity Research Data"" at FAIR Digital Objects Forum lecture Concept of Digital Twins /Surrogates"

Auteurs: Islam S
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7852889

"Poster ""Making workflow provenance FAIR across workflow systems with Workflow Run RO-Crate"", ELIXIR All Hands 2023"

Auteurs: Leo S, Rodríguez-Navas L, Fernández JM, De Geest P, Pireddu L, Crusoe MR, Garijo D, Colonnelli I, Sirvent R, Soiland-Reyes S
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8004793

"Poster ""Digital twin linking cultural ecosystem services of recreational potential and biodiversity in the Cairngorms National Park"""

Auteurs: Dick J, Rolph S, Andrews C, Watkins J
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8038537

"Presentation ""Overview of FAIR data publishing with bioschemas & RO-Crate"", ELIXIR All Hands 2023"

Auteurs: Soiland-Reyes S, Castro LJ
Publié dans: 2023
Éditeur: F1000 Research
DOI: 10.7490/f1000research.1119459.1

"Presentation ""A digital twin linking recreational potential and biodiversity in the Cairngorms National Park"", workshop Assessing and Preserving Soundscapes in National Parks"

Auteurs: Dick J, Andrews C, Rolph S, Watkins J
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8038203

"Presentation ""Digitalisation for Sustainable Nature"", presented for the European Environment Agency"

Auteurs: Broekhuijsen, J
Publié dans: 2022
Éditeur: Zenodo
DOI: 10.5281/zenodo.8135415

BioDT poster at EuroHPC Summit 2023

Auteurs: Drago, Federico; Pleiter, Dirk; Martinovic, Tomas
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7754745

"Poster ""Sharing data as machine-actionable objects using RO-Crate, Bioschemas and Signposting"", ELIXIR All Hands 2023"

Auteurs: Soiland-Reyes S, Leo S, Castro LJ, Sefton P, Goble C
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8004796

"Presentation ""Show and Tell: BioDT and DISSCo Perspective"" at FAIR-IMPACT Workshop: Why Mappings Matter and how to make them FAIR?"

Auteurs: Le Franc Y, Harmse H, De Santis L, Jeffery K, Matentzoglu N, Weiland C
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8162873

"Presentation ""Sharing research artefacts as FAIR Digital Objects using RO-Crate"", presented at Brookhaven National Laboratory"

Auteurs: Goble C, Soiland-Reyes S
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7915818

"Presentation materials ""Building diverse FDO Collections using RO-Crate: An overview of the RO-Crate concept and its implementations"" from FAIR Digital Object Forum workshop Defining FDO Collections"

Auteurs: Soiland-Reyes S, Goble C
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7915603

Digital twins: dynamic model-data fusion for ecology

Auteurs: de Koning K, Broekhuijsen J, Kühn I, Ovaskainen O, Taubert F, Endresen D, Schigel D, Grimm V
Publié dans: Trends in Ecology & Evolution, 2023, ISSN 1872-8383
Éditeur: Cell Press
DOI: 10.1016/j.tree.2023.04.010

"Conference abstract ""From data pipelines to FAIR data infrastructures: A vision for the new horizons of bio- and geodiversity data for scientific research"", 1st International Conference on FAIR Digital Objects"

Auteurs: Islam S, Weiland C, Addink W
Publié dans: Research Ideas and Outcomes, Numéro 8, 2022, ISSN 2367-7163
Éditeur: Pensoft Publishers
DOI: 10.3897/rio.8.e93816

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