Harnessing the microbial potential of fermented foods for healthy and sustainable food systems

Información del proyecto

DOMINO

Identificador del acuerdo de subvención: 101060218

DOI

10.3030/101060218

Fecha de la firma de la CE 5 Diciembre 2022

Fecha de inicio 1 Marzo 2023

Fecha de finalización 29 Febrero 2028

Financiado con arreglo a

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Coste total

€ 10 878 273,25

Aportación de la UE

€ 10 815 148,25

Coordinado por

INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT
France

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Documents, reports (8)

Design and Final version of the FMD

Comprehensive food microbiome database generated at species-level and strain-level with public datasets and with data generated by the Consortium

Communication, Dissemination, Exploitation plan including project website

Strategic activities will be planned to maximise the impact of the project. This first CDE plan will include the project website development. It will be updated throughout the project.

Report on consumer perception of FFs

Results of a multi-country consumer survey on the perception and acceptance of FF. Results of sensory experiments measuring product acceptance, hedonic liking, and willingness to pay in blind and full information rounds using selected case studies. Consumer perception.

Living Lab manual

Manual with scripts and reporting templates for living lab sessions and results of rapid literature reviews.

Practice abstracts – batch 1

This deliverable contains 1 initial practice abstract.

Report on outcomes Living Lab sessions; phase 1

Report on outcomes Living Lab sessions up till end of phase 1.

First update of the communication, dissemination and exploitation plan

The report will provide a summary of activities implemented and outline the plans for the rest of the project at EU level and in each Living Lab country in cooperation with the Living Lab coordinators.

Report on current market developments and innovation potential of FF products – secondary market research

Results of a survey that focuses on changes in the production system that are necessary to facilitate FF innovations. Secondary market analysis.

Data Management Plan (1)

First DOMINO Data Management Plan

DOMINO Data Management Plan

Data sets, microdata, etc (1)

First data on food metagenomic and genomic diversity of new microbial strains.

Several hundreds of food metagenomic and genomic data of microbial strains, related to the six food case studies of the project, are delivered to our database for consortia design

Publicaciones

Peer reviewed articles (11)

Mining of food metagenomes reveals an unexplored diversity of dsDNA bacteriophages

Autores: Liam H. Walsh, Viyal Soni, Joseph Ancla, Vincent Somerville, Nicola Segata, Susan Joyce, Douwe van Sinderen, Jennifer Mahony, Andrey N. Shkoporov, John G. Kenny, Paul D. Cotter, Orla O’Sullivan
Publicado en: npj Biofilms and Microbiomes, 2026, ISSN 2055-5008
Editor: Springer Science and Business Media LLC
DOI: 10.1038/S41522-026-00941-9

Fermented foods, their microbiome and its potential in boosting human health

Autores: Vincenzo Valentino, Raffaele Magliulo, Dominic Farsi, Paul D. Cotter, Orla O'Sullivan, Danilo Ercolini, Francesca De Filippis
Publicado en: Microbial Biotechnology, Edición 17, 2024, ISSN 1751-7915
Editor: Wiley
DOI: 10.1111/1751-7915.14428

Microbiome metabolic modeling as a tool for innovation in fermented foods

Autores: Elham Karimi, Julien Tap, Marie-Christine Champomier-Vergès, Stéphane Chaillou
Publicado en: Current Opinion in Food Science, Edición 67, 2025, ISSN 2214-7993
Editor: Elsevier BV
DOI: 10.1016/J.COFS.2025.101368

F1000 Research

Autores: Eka Bobokhidze; Michelle Weech; Katerina Petropoulou; Thomas Wilson; Jennifer Pugh; Rosalind Fallaize; Isabel Garcia-Perez; Frank P.-W. Lo; Adrian R Solis; Juliet Vickar; Stamatia Giannarou; George Mylonas; Benny Lo; Amanda J Lloyd; Albert Koulman; Manfred Beckmann; John Draper; Gary Frost; Julie A Lovegrove
Publicado en: F1000Research, 2024, ISSN 2046-1402
Editor: London: F1000Research
DOI: 10.12688/F1000RESEARCH.155683.1

Gut microbial metabolic signatures in diabetes mellitus and potential preventive and therapeutic applications

Autores: Enriqueta Garcia-Gutierrez; A. Kate O’Mahony; Reinaldo Sousa Dos Santos; Laura Marroquí; Paul D. Cotter
Publicado en: Gut Microbes, 2024, ISSN 1949-0984
Editor: Taylor & Francis Online
DOI: 10.1080/19490976.2024.2401654

Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries

Autores: Elisa Piperni, Long H. Nguyen, Paolo Manghi, Hanseul Kim, Edoardo Pasolli, Sergio Andreu-Sánchez, Alberto Arrè, Kate M. Bermingham, Aitor Blanco-Míguez, Serena Manara, Mireia Valles-Colomer, Elco Bakker, Fabio Busonero, Richard Davies, Edoardo Fiorillo, Francesca Giordano, George Hadjigeorgiou, Emily R. Leeming, Monia Lobina, Marco Masala, Andrea Maschio, Lauren J. McIver, Mauro Pala, Maristella Pitzalis, Jonathan Wolf, Jingyuan Fu, Alexandra Zhernakova, Simone M. Cacciò, Francesco Cucca, Sarah E. Berry, Danilo Ercolini, Andrew T. Chan, Curtis Huttenhower, Tim D. Spector, Nicola Segata, Francesco Asnicar
Publicado en: Cell, Edición 187, 2024, ISSN 0092-8674
Editor: Elsevier BV
DOI: 10.1016/j.cell.2024.06.018

Draft genome sequences of two strains of <i>Starmerella bacillaris</i> of enological interest, FC54 and MUT5705

Autores: Paola Di Gianvito; Miguel Morard; Francesca Cristetti; Luca Cocolin; Kalliopi Rantsiou; Amparo Querol; Vasileios Englezos
Publicado en: Microbiology Resource Announcements, 2025, ISSN 2576-098X
Editor: American Society for Microbiology
DOI: 10.1128/MRA.01009-25

Monitoring the yeasts ecology and volatiles profile throughout the spontaneous fermentation of Taggiasca cv. table olives through culture-dependent and independent methods

Autores: Chiara Traina, Ilario Ferrocino, Ambra Bonciolini, Vladimiro Cardenia, Xinping Lin, Kalliopi Rantsiou, Luca Cocolin
Publicado en: International Journal of Food Microbiology, Edición 417, 2024, ISSN 0168-1605
Editor: Elsevier BV
DOI: 10.1016/j.ijfoodmicro.2024.110688

Design of a proteolytic module for improved metabolic modeling of <i>Bacteroides caccae</i>

Autores: Paulay, Amandine; Grimaud, Ghjuvan M.; Caballero, Raphaël; Laroche, Béatrice; Leclerc, Marion; Labarthe, Simon; Maguin, Emmanuelle
Publicado en: mSystems, 2024, ISSN 2379-5077
Editor: ASM Journals
DOI: 10.1128/MSYSTEMS.00153-24

A genomics-based investigation of acetic acid bacteria across a global fermented food metagenomics dataset

Autores: Zhang, Erkang; Breselge, Samuel; Carlino, Niccolò; Segata, Nicola; Claesson, Marcus J.; Cotter, Paul D.
Publicado en: iScience, 2025, ISSN 2589-0042
Editor: Scien Direct
DOI: 10.1016/J.ISCI.2025.112139

Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome

Autores: Niccolò Carlino; Aitor Blanco-Míguez; Michal Punčochář; Claudia Mengoni; Federica Pinto; Alessia Tatti; Paolo Manghi; Federica Armanini; Michele Avagliano; Coral Barcenilla; Samuel Breselge; Raul Cabrera-Rubio; Inés Calvete-Torre; Mairéad Coakley; José F. Cobo-Díaz; Francesca De Filippis; Hrituraj Dey; John Leech; Eline S. Klaassens; Stephen Knobloch; Dominic O’Neil; Narciso M. Quijada; Carlos Sabater; Sigurlaug Skírnisdóttir; Vincenzo Valentino; Liam Walsh; Avelino Alvarez-Ordóñez; Pablo Alvarez; Livio Antonielli; Elke Arendt; Federica Armanini; Aurelie Aubry; Jacob Baelum; Coral Barcenilla; Alejandro Belanche; Yaiza Benavent-Gil; Tony Blake; Aitor Blanco-Míguez; Radhika Bongoni; Mickael Boyer; Fiona Brennan; Samuel Breselge; Helgi Briem; Derek Butler; Inés Calvete-Torre; Omar Cristobal Carballo; Mireille Cardinal; Niccolò Carlino; Christian Chervaux; Christine Chopin; Natallia Clotaire; Mairead Coakley; José Francisco Cobo-Díaz; Jim Codd; Stephen Conroy; Karla Fabiola Corral-Jara; Karla-Fabiola Corral-Jara; Paul D. Cotter; Gerard Coyne; Gerard Coyne; Chris Creevey; Patricia D. Cuevas; Brendan Curran; Susana Delgado; Liesbeth Derde; Muriel Derrien; Danilo Ercolini; Ruth Gomez Exposito; María Mercedes López Fernández; Francesca De Filippis; Daniel Fordham; Hubert Galy; Asimenia Gavriilidou; Oddur Gunnarsson; Buck Hanson; Gerben Hermes; Rongcai Huang; Sharon Huws; Israel Ikoyi; Alice Jaeger; Ian Jeffery; Marc Jérôme; Pierre-Alexandre Juan; David Kenny; Annelies Kers; Karim-Franck Khinouche; Stuart Kirwan; Eline S. Klaassens; Stephen Knobloch; Kristinn Kolbeinsson; Laetitia Kolypczuk; Tanja Kostic; Fabio Ledda; John Leech; Doerte Lehmann; Françoise Leroi; Eva Lewis; Johanna Ley; Eva Lucic; Kieran Lynch; Sabrina Mace; Iain MacLaren-Lee; Lisa Mahler de Sanchez; Juergen Marchart; Abelardo Margolles; Viggó Thór Marteinsson; Giulia Masetti; Fiona McGovern; Noirin McHugh; Steven McLoughlin; Dara Meehan; Lars Mølbak; Thomas Monin; Javier Moreno; Diego Morgavi; Steven Morrison; Steffen Müench; Ana Rute Ramos Neves; Emma Neylon; Laura Nyhan; Rhona O’Kelly; Dominic O’Neil; Paul O’Toole; Abimael Ortiz-Chura; Juan Manuel Palma; Edoardo Pasolli; Delphine Passerini; Milica Pastar; Federica Pinto; Walter Pirovano; Olga Plans; Marion Policht; Aurel Pop; Bianca Pop; Milka Popova; Miguel Prieto; Narciso M. Quijada; Antje Reiss; Pedro Romero; Patricia Ruas-Madiedo; Francesco Rubino; Raul Cabrera Rubio; Lorena Ruiz; Angela Ryan; Clodagh Ryan; Carlos Sabater; Aylin Sahin; Cecile Salaun; Fernanda Godoy Santos; Carolin Schneider; Nicola Segata; Evelyne Selberherr; Angela Sessitsch; Sigurlaug Skírnisdóttir; Hauke Smidt; Paul Smith; Markus Sprenger-Haussels; Ilma Tapio; Julien Tap; Vincenzo Valentino; Martin Wagner; Aaron Walsh; Liam Walsh; Sinead M. Waters; Spike Willcocks; David R. Yáñez-Ruiz; Tianhai Yan; Min Yap; Emanuele Zannini; Véronique Zuliani; Avelino Alvarez-Ordóñez; Francesco Asnicar; Gloria Fackelmann; Vitor Heidrich; Abelardo Margolles; Viggó Thór Marteinsson; Omar Rota Stabelli; Martin Wagner; Danilo Ercolini; Paul D. Cotter; Nicola Segata; Edoardo Pasolli
Publicado en: Cell, 2024, ISSN 1097-4172
Editor: Elsevier Inc.
DOI: 10.1016/J.CELL.2024.07.039

Other (2)

The power of fermented foods: Levers for healthier and sustainable nutrition

Autores: Rieke Sproten
Publicado en: AgroFOOD Industry Hi Tech, Edición Vol. 34(2)2023 September, 2023
Editor: Teknoscienze

Which factors drive consumers’ evaluation of fermented foods and drinks? A protocol for a Systematic Map

Autores: Rene Geiss, Jutta Roosen
Publicado en: Open Science Framework, Edición 15.06.2024, 2024
Editor: Center for Open Science, Inc.
DOI: 10.17605/OSF.IO/VNKST

Conference proceedings (1)

Microbiomas y sostenibilidad de la cadena alimentaria: oportunidades basadas en microbiomas para valorizar subproductos agroalimentarios

Autores: Ruiz García, Lorena
Publicado en: XXIII Congreso Nacional de Microbiología de los Alimentos, 2025
Editor: Universidad Politécnica de Cartagena
DOI: 10.31428/10317/17525