Modern Approaches to the Monitoring of BiOdiversity

Informations projet

MAMBO

N° de convention de subvention: 101060639

DOI

10.3030/101060639

Date de signature de la CE 2 Juin 2022

Date de début 1 Septembre 2022

Date de fin 31 Août 2026

Financé au titre de

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Coût total

€ 3 703 783,75

Contribution de l’UE

€ 3 703 783,00

Coordonné par

AARHUS UNIVERSITET
Denmark

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Documents, reports (9)

Project identity, promotional materials pack and website running

(Project identity, promotional materials pack and website running)

Review of habitat condition metrics used across the EU, suitable for RS

(Review of habitat condition metrics used across the EU, suitable for RS)

Guidelines for data standards and technical specifications of MAMBO tools

(Guidelines for data standards and technical specifications of MAMBO tools )

Risk Management Plan

(Risk Management Plan)

Report on stakeholder mapping and network analysis

(Report on stakeholder mapping and network analysis)

Report on optimal positioning and linkage of MAMBO tools to KCBD and RI landscape

(Report on optimal positioning and linkage of MAMBO tools to KCBD and RI landscape )

Report on stakeholder needs

(Report on stakeholder needs)

Assessment of interoperability and maturity for upscaling habitat condition metrics

(Assessment of interoperability and maturity for upscaling habitat condition metrics )

Project Management and Quality Assurance Plan (Updated each reporting period)

(Project Management and Quality Assurance Plan (Updated each reporting period))

Other (1)

Open-source deep learning framework for habitat extent mapping - version 1.0

(Open-source deep learning framework for habitat extent mapping - version 1.0)

Publications

Other (2)

The GeoLifeCLEF 2023 Dataset to evaluate plant species distribution models at high spatial resolution across Europe

Auteurs: Christophe Botella, Benjamin Deneu, Diego Marcos, Maximilien Servajean, Joaquim Estopinan, et al..
Publié dans: ArXiv preprint - Populations and Evolution, 2023, ISSN 2331-8422
Éditeur: ArXiv.org
DOI: 10.48550/arXiv.2308.05121

A General Method for Detection and Segmentation of Terrestrial Arthropods in Images

Auteurs: Asger Svenning, Guillaume Mougeot, Jamie Alison, Daphne Chevalier, Nisa Luise Chavez Molina, Song-Quan Ong, Kim Bjerge, Juli Carrillo, Toke Thomas Hoeye, Quentin Geissmann
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.04.08.647223

Peer reviewed articles (12)

Modern Approaches to the Monitoring of Biоdiversity (MAMBO)

Auteurs: Høye TT, August T, Balzan MV, Biesmeijer K, Bonnet P, Breeze TD, Dominik C, Gerard F, Joly A, Kalkman V, Kissling WD, Metodiev T, Moeslund J, Potts S, Roy DB, Schweiger O, Senapathi D, Settele J, Stoev P, Stowell D
Publié dans: Research Ideas and Outcomes, Numéro 9, 2023, ISSN 2367-7163
Éditeur: Pensoft Publishers
DOI: 10.3897/RIO.COLL.223

Towards edge processing of images from insect camera traps

Auteurs: Kim Bjerge, Henrik Karstoft, Toke T. Høye
Publié dans: Remote Sensing in Ecology and Conservation, 2025, ISSN 2056-3485
Éditeur: Wiley
DOI: 10.1002/RSE2.70007

Data from three camera trapping pilots in the Amsterdam Water Supply Dunes of the Netherlands

Auteurs: Julian C. Evans, Rotem Zilber, W. Daniel Kissling
Publié dans: Data in Brief, Numéro 54, 2025, ISSN 2352-3409
Éditeur: Elsevier BV
DOI: 10.1016/J.DIB.2024.110544

Laserfarm – A high-throughput workflow for generating geospatial data products of ecosystem structure from airborne laser scanning point clouds

Auteurs: Kissling, W.D.; Shi, Y.; Koma, Z.; Meijer, C.; Ku, O.; Nattino, F.; Seijmonsbergen, A.C.; Grootes, M.W.
Publié dans: Ecological Informatics, Numéro v.72, 2022, ISSN 1574-9541
Éditeur: Elsevier
DOI: 10.1016/J.ECOINF.2022.101836

Diversity and Distributions

Auteurs: W. Daniel Kissling, Yifang Shi
Publié dans: Diversity and Distributions, Numéro v. 29, 2023, ISSN 1366-9516
Éditeur: Wiley
DOI: 10.1111/ddi.13760

Hierarchical classification of insects with multitask learning and anomaly detection

Auteurs: Bjerge, Kim; Geissmann, Quentin; Alison, Jamie; Mann, Hjalte M.R.; Høye, Toke Thomas; Dyrmann, Mads; Karstoft, Henrik
Publié dans: Ecological Informatics, Numéro v.77, 2023, ISSN 1574-9541
Éditeur: Elsevier BV
DOI: 10.1016/J.ECOINF.2023.102278

Accurate detection and identification of insects from camera trap images with deep learning

Auteurs: Kim Bjerge; Jamie Alison; Mads Dyrmann; Carsten Eie Frigaard; Hjalte M. R. Mann; Toke Thomas Høye
Publié dans: PLOS Sustainability and Transformation, 2023, ISSN 2767-3197
Éditeur: Public Library of Science
DOI: 10.1101/2022.10.25.513484

A deep learning pipeline for time-lapse camera monitoring of insects and their floral environments

Auteurs: Kim Bjerge, Henrik Karstoft, Hjalte M.R. Mann, Toke T. Høye
Publié dans: Ecological Informatics, Numéro 84, 2024, ISSN 1574-9541
Éditeur: Elsevier BV
DOI: 10.1016/J.ECOINF.2024.102861

Adapting a global plant identification model to detect invasive alien plant species in high-resolution road side images

Auteurs: Vincent Espitalier, Jean-Christophe Lombardo, Hervé Goëau, Christophe Botella, Toke Thomas Høye, Mads Dyrmann, Pierre Bonnet, Alexis Joly
Publié dans: Ecological Informatics, Numéro 89, 2025, ISSN 1574-9541
Éditeur: Elsevier BV
DOI: 10.1016/J.ECOINF.2025.103129

AI Species Identification Using Image and Sound Recognition for Citizen Science, Collection Management and Biomonitoring: From Training Pipeline to Large-Scale Models

Auteurs: Laurens Hogeweg, Ni Yan, Django Brunink, Khadija Ezzaki-Chokri, Wilfred Gerritsen, Rita Pucci, Burooj Ghani, Dan Stowell, Vincent Kalkman
Publié dans: Biodiversity Information Science and Standards, Numéro 8, 2024, ISSN 2535-0897
Éditeur: Pensoft Publishers
DOI: 10.3897/BISS.8.136839

A workflow for extracting ungulate trails in wetlands using 3D point clouds obtained from airborne laser scanning

Auteurs: Jinhu Wang, Perry Cornelissen, W. Daniel Kissling
Publié dans: Frontiers in Remote Sensing, Numéro 6, 2025, ISSN 2673-6187
Éditeur: Frontiers Media SA
DOI: 10.3389/FRSEN.2025.1599128

Performance of Computer Vision Algorithms for Fine‐Grained Classification Using Crowdsourced Insect Images

Auteurs: Rita Pucci, Vincent J. Kalkman, Dan Stowell
Publié dans: IET Computer Vision, Numéro 19, 2025, ISSN 1751-9632
Éditeur: Institution of Engineering and Technology (IET)
DOI: 10.1049/CVI2.70006

Conference proceedings (7)

Insect Identification in the Wild: The AMI Dataset

Auteurs: Aditya Jain, Fagner Cunha, Michael James Bunsen, Juan Sebastián Cañas, Léonard Pasi, Nathan Pinoy, Flemming Helsing, JoAnne Russo, Marc Botham, Michael Sabourin, Jonathan Fréchette, Alexandre Anctil, Yacksecari Lopez, Eduardo Navarro, Filonila Perez Pimentel, Ana Cecilia Zamora, José Alejandro Ramirez Silva, Jonathan Gagnon, Tom August, Kim Bjerge, Alba Gomez Segura, Marc Bélisle, Yves Basset, Kent P. McFarland, David Roy, Toke Thomas Høye, Maxim Larrivée, David Rolnick
Publié dans: Lecture Notes in Computer Science, Computer Vision – ECCV 2024, 2024
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72913-3_4

Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service

Auteurs: Pierre Bonnet , Antoine A.A. Affouard, Jean-Christophe J.-C. Lombardo , Mathias Chouet , Hugo Gresse , Vanessa Hequet , Remi Palard , Maxime Fromholtz , Vincent Espitalier , Hervé H.G. Goëau , Benjamin Deneu , Christophe Botella , Joaquim Estopinan , Césa
Publié dans: Biodiversity Information Science and Standards, 2023, ISSN 2535-0897
Éditeur: Pensoft Publishers
DOI: 10.3897/BISS.7.112545

Lecture Notes in Computer Science

Auteurs: Alexis Joly, Hervé Goëau, Stefan Kahl, Lukáš Picek, Christophe Botella, Diego Marcos, Milan Šulc, Marek Hrúz, Titouan Lorieul, Sara Si Moussi, Maximilien Servajean, Benjamin Kellenberger, Elijah Cole, Andrew Durso, Hervé Glotin, Robert Planqué, Willem-Pie
Publié dans: ECIR 2023 LNCS proceedings, 2023, ISSN 0302-9743
Éditeur: Springer
DOI: 10.1007/978-3-031-28241-6_65

Overview of GeoLifeCLEF 2023: Species composition prediction with high spatial resolution at continental scale using remote sensing

Auteurs: Christophe Botella, Benjamin Deneu, Diego Marcos, Maximilien Servajean, Théo Larcher, César Leblanc, Joaquim Estopinan, Pierre Bonnet, Alexis Joly
Publié dans: Working Notes of the Conference and Labs of the Evaluation Forum, 2023, ISSN 1613-0073
Éditeur: CEUR-WS

Overview of PlantCLEF 2023: Image-based Plant Identification at Global Scale

Auteurs: Hervé Goëau, Pierre Bonnet, Alexis Joly
Publié dans: Working Notes of the Conference and Labs of the Evaluation Forum, 2023, ISSN 1613-0073
Éditeur: CEUR-WS

Lecture Notes in Computer Science

Auteurs: Alexis Joly, Hervé Goëau, Stefan Kahl, Lukáš Picek, Christophe Botella, Diego Marcos, Milan Šulc, Marek Hrúz, Titouan Lorieul, Sara Si Moussi, Maximilien Servajean, Benjamin Kellenberger, Elijah Cole, Andrew Durso, Hervé Glotin, Robert Planqué, Willem-Pie
Publié dans: Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2023, ISSN 0302-9743
Éditeur: Springer
DOI: 10.1007/978-3-031-42448-9_27

Comparison between transformers and convolutional models for fine-grained classification of insects

Auteurs: Rita Pucci, Vincent J. Kalkman, Dan Stowell
Publié dans: Workshop Camera Traps, AI and Ecology, 2023
Éditeur: Computer Vision Group Jena
DOI: 10.48550/arXiv.2307.11112