COMBATTING DIET RELATED NON-COMMUNICABLE DISEASE THROUGH ENHANCED SURVEILLANCE

Informations projet

CoDiet

N° de convention de subvention: 101084642

DOI

10.3030/101084642

Date de signature de la CE 17 Octobre 2022

Date de début 1 Janvier 2023

Date de fin 31 Decembre 2026

Financé au titre de

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Coût total

€ 7 330 589,25

Contribution de l’UE

€ 7 330 589,25

Coordonné par

FUNDACION AZTI - AZTI FUNDAZIOA
Spain

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Documents, reports (7)

Extending PGMs towards time-series

We will describe the methodological aspects of working with time series in probabilistic graphical models and computing the conditional expectations therein. This will be accompanied by open-source code at github.com.

Communication and Dissemination plan

Details strategy to implement and evaluate activities to maximise project impact. Considered a living document to be updated regularly over the course of the project lifetime

Communication and dissemination plan update RP1

Updated Communication and Dissemination Plan (updates will consider re-evaluation of KPIs, target audiences, and implementation and evaluation of activities etc).

Legal and ethical aspects of personalised nutrition

We will present both an overview of the legal and ethical aspects of personalized nutrition and develop a set of suggestions for implementing it going forwards.

Kick-off meeting report

Detailed summary of project set-up at inaugural consortium assembly

Practice abstract batch 1

This deliverable contains five practical abstracts related to two areas of the WP1 and WP2: 1. One presenting the results of the AI systematic reviews carried out on the relationship between diet and non-communicable disease 2. Three presenting the dietary intake assessment ( i camera, ii sensors and iii multi omics) and including the initial thoughts on a population based dietary assessment package3. One presenting the review of public health policy and personal nutrition

Report on update to Food-EPI assessments describing policy scenarios

Based on the countries’ Food-EPI assessments, a report will be produced summarising a range of policy scenarios combining the strengths of approaches adopted in the countries observed in several key policy areas, for evaluation in task 6.3.

Data Management Plan (2)

Data management plan update RP1

Updated data management plan encompassing both data collected in WP2 and data collected previously, as explained in WP1.

Data management plan

We will present a data management plan encompassing both data collected in WP2 and data collected previously, as explained in WP1.

Websites, patent fillings, videos etc. (1)

Project website

Launched online. Freely accessible platform for all audiences to access publicly available CoDiet resources and data.

Data sets, microdata, etc (2)

Stratified list of precision medicine initiatives, ranked according to their potential synergy with CoDiet

A structured document detailing the cohort characteristics, meta data and data availability of precision medicine initiatives relevant to CoDiet. These data will be used, subject to availability, for initial development of methods and models in WP3 and WP4.

Release of an automatically annotated and manually verified corpus of 1,000 Open Access articles

A dataset consisting of annotated BioC JSON documents of Open Access publications with dietary variables, phenotypes, genes, transcripts, proteins, metabolites, microbes and pathways annotated, and relations between these mapped.

Demonstrators, pilots, prototypes (1)

A prototype in causal discovery

We will develop a first prototype of the causal discovery with irregularly sampled time series and latent confounders. This will be open-source software at gihub.com.

Publications

Conference proceedings (19)

Energy Efficient Scheduling for Serverless Systems

Auteurs: Michail Tsenos, Aristotelis Peri, Vana Kalogeraki
Publié dans: Proceedings of the IEEE International Conference on Autonomic Computing and Self-Organizing Systems (ACSOS), 2023, ISSN 2473-2001
Éditeur: IEEE
DOI: 10.1109/ACSOS58161.2023.00020

Orchestrating the Execution of Serverless Functions in Hybrid Clouds

Auteurs: Aristotelis Peri, Michail Tsenos, Vana Kalogeraki
Publié dans: Proceedings of the IEEE International Conference on Autonomic Computing and Self-Organizing Systems (ACSOS), 2023, ISSN 2473-2001
Éditeur: IEEE
DOI: 10.1109/ACSOS58161.2023.00032

Exploring GPU-Based Workload Scheduling Techniques for Edge Computing

Auteurs: Michail Tsenos, Vana Kalogeraki
Publié dans: 2025 IEEE International Conference on Cloud Engineering (IC2E), 2025
Éditeur: IEEE
DOI: 10.1109/IC2E65552.2025.00042

Efficient Dataset Distillation via Minimax Diffusion

Auteurs: Jianyang Gu, Saeed Vahidian, Vyacheslav Kungurtsev, Haonan Wang, Wei Jiang, Yang You, Yiran Chen
Publié dans: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2024
Éditeur: Arxiv

Reinforcement Learning with Adaptive Regularization for Safe Control of Critical Systems

Auteurs: Haozhe Tian, Homayoun Hamedmoghadam, Robert Shorten, Pietro Ferraro
Publié dans: Neurips 2024
Éditeur: N/A

IgNITE: Scheduling Pipeline-Parallel DNN Training Jobs on Heterogeneous Infrastructures

Auteurs: Phivos Dadamis, Dimitrios Tomaras, Vana Kalogeraki, Dimitrios Gunopulos
Publié dans: Proceedings of the 19th ACM International Conference on Distributed and Event-based Systems, 2025
Éditeur: ACM
DOI: 10.1145/3701717.3734461

Advancing phenotype named entity recognition and normalization for dysmorphology physical examination reports

Auteurs: Kim, Kim, Sohn, Beck, Rei, Kim, Simpson, Posma, Lain, Sung, Kang
Publié dans: Proceedings of the BioCreative VIII Challenge and Workshop: Curation and Evaluation in the era of Generative Models, 2023
Éditeur: Zenodo

From Medical Literature to Predictive Features: An Evidence-based Knowledge Graph Approach

Auteurs: Donghee Choi, Antoine D Lain, Joram M. Posma, Mark Kozdoba, Binyamin Perets, Shie Mannor
Publié dans: ICLR 2025 Workshop LMRL Submission, 2025
Éditeur: OpenReview

Learning Hidden Markov Models When the Locations of Missing Observations are Unknown

Auteurs: Mark Kozdoba, Binyamin Perets, Shie Mannor
Publié dans: International Conference on Machine Learning, PMLR, 2023., 2023
Éditeur: Arxiv

Sobolev Space Regularised Pre Density Models

Auteurs: Mark Kozdoba, Binyamin Perets, Shie Mannor
Publié dans: International Conference on Machine Learning, PMLR, 2024., 2024
Éditeur: PMLR

Prediction-driven resource provisioning for serverless container runtimes

Auteurs: Dimitrios Tomaras, Michail Tsenos, Vana Kalogeraki
Publié dans: Proceedings of the IEEE International Conference on Autonomic Computing and Self-Organizing Systems (ACSOS), 2023, ISSN 2473-2001
Éditeur: IEEE
DOI: 10.1109/ACSOS58161.2023.00033

"""Unnormalized Density Estimation with Root Sobolev Norm Regularization"""

Auteurs: Mark Kozdoba, Binyamin Perets, Shie Mannor
Publié dans: NeurIPS 2023 Second Table Representation Learning Workshop. 2023., 2023
Éditeur: OpenReview

"""TIMBER: On supporting data pipelines in Mobile Cloud Environments """

Auteurs: Dimitrios Tomaras, Michail Tsenos, Vana Kalogeraki, Dimitrios Gunopulos
Publié dans: Proceedings of the 25th IEEE International Conference on Mobile Data Management (MDM), 2024, ISSN 2375-0324
Éditeur: IEEE
DOI: 10.1109/MDM61037.2024.00032

Unnormalized Density Estimation with Root Sobolev Norm Regularization

Auteurs: Mark Kozdoba, Binyamin Perets, Shie Mannor
Publié dans: OPT 2023: Optimization for Machine Learning. 2023, NeuRIPS Workshop, 2023
Éditeur: OpenReview

Trustworthy Scheduling for Big Data Applications

Auteurs: Dimitrios Tomaras, Vana Kalogeraki, Dimitrios Gunopulos
Publié dans: Proceedings of the 13th IEEE International Conference on Big Data (IEEE BigData 2025), 2025
Éditeur: IEEE

Comparative Analyses of Multilingual Drug Entity Recognition Systems for Clinical Case Reports In Cardiology

Auteurs: Lee, Simpson, Posma, Lain
Publié dans: Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2024), 2024, ISSN 1613-0073
Éditeur: CEUR-WS

STRATA: Random Forests going Serverless

Auteurs: Dimitrios Tomaras, Sebastian Buschjäger, Vana Kalogeraki, Katharina Morik, Dimitrios Gunopulos
Publié dans: Proceedings of the 25th International Middleware Conference, 2024
Éditeur: ACM
DOI: 10.1145/3652892.3654791

Dynamic Storage Selection for Mitigating Tail Latency in Serverless Pipelines

Auteurs: Michail Tsenos, Aristotelis Peri, Vana Kalogeraki
Publié dans: 2024 IEEE International Conference on Autonomic Computing and Self-Organizing Systems (ACSOS), 2024
Éditeur: IEEE
DOI: 10.1109/ACSOS61780.2024.00029

Vertical Scaling Can Save Time: Optimizing Container Scheduling to Handle Sudden Bursts

Auteurs: Aristotelis Peri, Michail Tsenos, Vana Kalogeraki
Publié dans: Proceedings of the 19th ACM International Conference on Distributed and Event-based Systems, 2025
Éditeur: ACM
DOI: 10.1145/3701717.3730549

Peer reviewed articles (7)

Dried blood spot technique for dietary fat assessment in a human nutritional intervention focused on oily fish intake

Auteurs: Laura Garcia-Urtiaga, Ainara Cano, Mercedes Caro, Jaione Pagaldai, Javier Amezaga, Itziar Tueros, Sara Arranz
Publié dans: Nutrition & Metabolism, Numéro 22, 2025, ISSN 1743-7075
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/S12986-025-00983-4

OBEClust: joining forces to prevent obesity

Auteurs: Manuel Tena-Sempere, Dimitrios-Dionyssios Koutsouris, George Dedoussis, Jeroen Lakerveld, Karl-Heinz Wagner, Itziar Tueros, Philippe Froguel, Torsten Bohn, Paulo J. Oliveira
Publié dans: Nature Reviews Endocrinology, Numéro 22, 2026, ISSN 1759-5029
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/S41574-025-01212-X

TransformDDI: The Transformer-Based Joint Multi-Task Model for End-to-End Drug-Drug Interaction Extraction

Auteurs: Dimitrios Zaikis, Ioannis Vlahavas
Publié dans: IEEE Journal of Biomedical and Health Informatics, Numéro 29, 2025, ISSN 2168-2194
Éditeur: Institute of Electrical and Electronics Engineers (IEEE)
DOI: 10.1109/JBHI.2024.3507738

Vocabulary Matters: An Annotation Pipeline and Four Deep Learning Algorithms for Enzyme Named Entity Recognition

Auteurs: Wang, Vijayaraghavan, Beck, Posma
Publié dans: Journal of Proteome Research, 2024, ISSN 1535-3907
Éditeur: ACS
DOI: 10.1101/2023.06.23.546229

Topological embedding and directional feature importance in ensemble classifiers for multi-class classification

Auteurs: Eloisa Rocha Liedl, Shabeer Mohamed Yassin, Melpomeni Kasapi, Joram M. Posma
Publié dans: Computational and Structural Biotechnology Journal, Numéro 23, 2026, ISSN 2001-0370
Éditeur: American Association for the Advancement of Science (AAAS)
DOI: 10.1101/2024.08.01.605982V1

Gut microbiome signatures of vegan, vegetarian and omnivore diets and associated health outcomes across 21,561 individuals

Auteurs: Gloria Fackelmann, Paolo Manghi, Niccolò Carlino, Vitor Heidrich, Gianmarco Piccinno, Liviana Ricci, Elisa Piperni, Alberto Arrè, Elco Bakker, Alice C. Creedon, Lucy Francis, Joan Capdevila Pujol, Richard Davies, Jonathan Wolf, Kate M. Bermingham, Sarah E. Berry, Tim D. Spector, Francesco Asnicar, Nicola Segata
Publié dans: Nature Microbiology, Numéro 10, 2025, ISSN 2058-5276
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/S41564-024-01870-Z

Learning of Linear Dynamical Systems as a Noncommutative Polynomial Optimization Problem

Auteurs: Zhou and Mareček
Publié dans: IEEE Transactions on Automatic Control, 2024, ISSN 1558-2523
Éditeur: IEEE
DOI: 10.48550/arXiv.2002.01444

Other (2)

Microbial Named Entity Recognition and Normalisation for AI-assisted Literature Review and Meta-Analysis

Auteurs: Dhylan Patel, Antoine D. Lain, Avish Vijayaraghavan, Nazanin Faghih Mirzaei, Monica N. Mweetwa, Meiqi Wang, Tim Beck, Joram M. Posma
Publié dans: 2025
Éditeur: openRxiv
DOI: 10.1101/2025.08.29.671515

High-precision Biomedical Text Corpora for Multi-Entity Recognition: A CoDiet study

Auteurs: Antoine D. Lain, Stephanie Go, Alisha Mahmud, Shruti Rajendra, Ainara Cano San José, Katerina Loupasaki, Georgios Theodoridis, Maider Bizkarguenaga Uribiarte, Yajie Gu, Olga Deda, Ricardo Diogo Alves Conde, Nieves Embade, Ángela de Diego Rodríguez, Nerea Burguera, Danai Rossiou, Rubén Gil Redondo, Domniki Gallou, Itziar Tueros, Rakesh Velmurugan, Vasiliki Gkanali, Mercedes Caro Burgos, Petros Pousinis, George Alektoridis, Sara Arranz, Nasos Nikolopoulos, Xingchen Yan, Rebeca Fernández Carrión, Thomas Rowlands, Donghee Choi, Marek Rei, Chris Cave-Ayland, Adrian D’Alessandro, null null, Tim Beck, Joram M. Posma
Publié dans: 2025
Éditeur: openRxiv
DOI: 10.1101/2025.09.04.673740