Perseus Biomics has entered a rapid design and prototyping cycle, with a first prototype of the Perseus Biomics microbiome analyzer available in the Perseus Biomics headquarters, undergoing benchmarking studies. Early in the project, a key decision was made to build on off-the shelf components for the construction of the prototype, and this has allowed us to reach a functional prototype well within the foreseen timeframe. This prototype includes automated sample handling capacities and automated sample analysis of multiple microbiomes in a single run. The associated consumables have gone through the first step of industrialization, and are available for use on the prototype microbiome analyser. This included stability studies and formulation of the components of the Perseus Biomics chemoenzymatic process, the DNA deposition consumables and client side microbiome sampling consumables. Bespoke remote monitoring of the device is implemented, supporting global placement and servicing of the devices.