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Proteomics Standards International Molecular Exchange - Systematic Capture of Published Molecular Interaction Data

Objective

The aim of the PSIMEx proposal is to systematically make published molecular interaction data computationally accessible. We plan to further develop the existing standard for molecular interactions developed by the HUPO Proteomics Standards Initiative, and to promote its implementation in the entire chain from experiment planning via data formatting and analysis to data representation in journal publications and public databases. Key aspects will be the dissemination of and user training on minimum requirements for publication of molecular interaction data; the further development of the PSI-MI standard for representation of data fulfilling these minimal requirements; the specification of efficient data deposition tools and data flow from data producers to public repositories as part of the publication process; implementation of international data exchange among databases; training and exchange of curation staff in the participating databases; and the definition of analysis tools for the efficient use of data following the PSI-MI standards.

Field of science

  • /natural sciences/computer and information sciences/databases
  • /natural sciences/computer and information sciences/data science/data exchange
  • /natural sciences/biological sciences/biochemistry/biomolecules/proteins/proteomics

Call for proposal

FP7-HEALTH-2007-B
See other projects for this call

Funding Scheme

CSA-CA - Coordination (or networking) actions

Coordinator

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Address
Meyerhofstrasse 1
69117 Heidelberg
Germany
Activity type
Research Organisations
EU contribution
€ 859 341
Administrative Contact
Tom Ratcliff (Mr.)

Participants (14)

UNIVERSITA DEGLI STUDI DI ROMA TOR VERGATA
Italy
EU contribution
€ 191 530
Address
Via Cracovia 50
00133 Roma
Activity type
Higher or Secondary Education Establishments
Administrative Contact
Gianni Cesareni (Prof.)
THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
United States
EU contribution
€ 161 035
Address
Franklin Street 1111, 12 Floor
94607 Oakland Ca
Activity type
Higher or Secondary Education Establishments
Administrative Contact
Martha Hansen (Ms.)
SIB INSTITUT SUISSE DE BIOINFORMATIQUE
Switzerland
EU contribution
€ 63 130
Address
Rue Michel Servet 1 Cmu
1206 Geneve
Activity type
Research Organisations
Administrative Contact
Ioannis Xenarios (Dr.)
SPRINGER NATURE LIMITED
United Kingdom
Address
4 Crinan Street
RG21 6XS Basingstoke Hants
Activity type
Private for-profit entities (excluding Higher or Secondary Education Establishments)
Administrative Contact
Howard Ratner (Mr.)
WILEY-VCH VERLAG GMBH & CO KGAA
Germany
Address
Boschstrasse 12
69469 Weinheim
Activity type
Private for-profit entities (excluding Higher or Secondary Education Establishments)
Administrative Contact
Hans-Joachim Kraus (Dr.)
GE HEALTHCARE BIO-SCIENCES AB
Sweden
EU contribution
€ 31 244
Address
Bjorkgatan 30
751 84 Uppsala
Activity type
Private for-profit entities (excluding Higher or Secondary Education Establishments)
Administrative Contact
Christina Burtsoff Asp (Ms.)
THE UNIVERSITY OF EDINBURGH
United Kingdom
EU contribution
€ 31 030
Address
Old College, South Bridge
EH8 9YL Edinburgh
Activity type
Higher or Secondary Education Establishments
Administrative Contact
Angela Noble (Ms.)
University of Maryland Biotechnology Institute

Participation ended

United States
Address
East Pratt Street - Columbus Center, Suite 200 701
21202-3101 Baltimore
Activity type
Higher or Secondary Education Establishments
Administrative Contact
Dean Drake (Mr.)
FUNDACION DE INVESTIGACION DEL CANCER DE LA UNIVERSIDAD DE SALAMANCA
Spain
EU contribution
€ 26 750
Address
Campus Miguel De Unamuno
37007 Salamanca
Activity type
Research Organisations
Administrative Contact
Gerardo Arevalo Vicente (Mr.)
TECHNISCHE UNIVERSITAET MUENCHEN
Germany
EU contribution
€ 32 285
Address
Arcisstrasse 21
80333 Muenchen
Activity type
Higher or Secondary Education Establishments
Administrative Contact
Ulrike Ronchetti (Ms.)
HELMHOLTZ ZENTRUM MUENCHEN DEUTSCHES FORSCHUNGSZENTRUM FUER GESUNDHEIT UND UMWELT GMBH

Participation ended

Germany
EU contribution
€ 6 316
Address
Ingolstadter Landstrasse 1
85764 Neuherberg
Activity type
Research Organisations
Administrative Contact
Juergen Ertel (Dr.)
CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
France
EU contribution
€ 37 450
Address
Rue Michel Ange 3
75794 Paris
Activity type
Research Organisations
Administrative Contact
Nadine Brochet (Ms.)
SHANGHAI CENTER FOR BIOINFORMATION TECHNOLOGY
China
EU contribution
€ 19 260
Address
Qinzhou Road - Building 2 - Floor 4 100
200235 Shanghai
Activity type
Research Organisations
Administrative Contact
Zhiwei Cao (Prof.)
J. CRAIG VENTER INSTITUTE INC CORPORATION
United States
EU contribution
€ 17 013
Address
Medical Center Drive 9704
20814 Rockville Maryland
Activity type
Research Organisations
Administrative Contact
Leslie Bisignano (Ms.)