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Autonomous Cellular Computers for Diagnosis

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Publications

Differentially optimized cell-free buffer enables robust expression from unprotected linear DNA in exonuclease-deficient extracts

Author(s): Angelo Cardoso Batista, Antoine Levrier, Paul Soudier, Peter L. Voyvodic, Tatjana Achmedov, Tristan Reif-Trauttmansdorff, Angelique DeVisch, Martin Cohen Gonsaud, Jean-Loup Faulon, VChase L. Beisel, Jerome Bonnet, Manish Kushwaha
Published in: BioRxiv, 2021
Publisher: Cold Spring Harbor
DOI: 10.1101/2021.09.07.459228

Scalable composition frameworks for multicellular logic

Author(s): Sarah Guiziou, Pauline Mayonove, Federico Ulliana, Violaine Moreau, Michel Leclere, Jerome Bonnet
Published in: Biorxiv-The preprint server for biology, 2017
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/150987

Exploring the design space of recombinase logic circuits

Author(s): Sarah Guiziou, Guillaume Pérution-Kihli, Federico Ulliana, Michel Leclère, Jérôme Bonnet
Published in: BioRxiv, 2019
Publisher: Cold Spring Harbor
DOI: 10.1101/711374

Programmable receptors enable bacterial biosensors to detect pathological biomarkers in clinical samples.

Author(s): Chang HJ, Zúñiga A, Conejero I, Voyvodic PL, Gracy J, Fajardo-Ruiz E, Cohen-Gonsaud M, Cambray G, Pageaux GP, Meszaros M, Meunier L, Bonnet J.
Published in: Nature Communications, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-25538-y

Hierarchical composition of reliable recombinase logic devices

Author(s): Guiziou S, Mayonove P, Bonnet J.
Published in: Nature Communications, 2019, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-019-08391-y

Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors

Author(s): Peter L. Voyvodic, Amir Pandi, Mathilde Koch, Ismael Conejero, Emmanuel Valjent, Philippe Courtet, Eric Renard, Jean-Loup Faulon & Jerome Bonnet
Published in: Nature Communications, 2019, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-019-09722-9

A Modular Receptor Platform To Expand the Sensing Repertoire of Bacteria

Author(s): Hung-Ju Chang, Pauline Mayonove, Agustin Zavala, Angelique De Visch, Philippe Minard, Martin Cohen-Gonsaud, Jerome Bonnet
Published in: ACS Synthetic Biology, 7/1, 2017, Page(s) 166-175, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.7b00266

An Automated Design Framework for Multicellular Recombinase Logic

Author(s): Sarah Guiziou, Federico Ulliana, Violaine Moreau, Michel Leclere, Jerome Bonnet
Published in: ACS Synthetic Biology, 7/5, 2018, Page(s) 1406-1412, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.8b00016

A part toolbox to tune genetic expression in Bacillus subtilis

Author(s): Sarah Guiziou, Vincent Sauveplane, Hung-Ju Chang, Caroline Clerté, Nathalie Declerck, Matthieu Jules, Jerome Bonnet
Published in: Nucleic Acids Research, 2016, Page(s) gkw624, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkw624

Rational programming of history-dependent logic in cellular populations.

Author(s): Zúñiga A, Guiziou S, Mayonove P, Meriem ZB, Camacho M, Moreau V, Ciandrini L, Hersen P, Bonnet J.
Published in: Nature Communications, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-18455-z.

Microbially derived biosensors for diagnosis, monitoring and epidemiology

Author(s): Hung-Ju Chang, Peter L. Voyvodic, Ana Zúñiga, Jérôme Bonnet
Published in: Microbial Biotechnology, 10/5, 2017, Page(s) 1031-1035, ISSN 1751-7915
Publisher: Wiley
DOI: 10.1111/1751-7915.12791

Cell-free biosensors for biomedical applications

Author(s): Voyvodic PL, Bonnet J
Published in: Current Opinion In Biomedical Engineering, 2020, ISSN 2468-4511
Publisher: Elsevier
DOI: 10.1016/j.cobme.2019.08.005

Synthetic receptors to understand and control cellular functions.

Author(s): Chang HJ, Bonnet J.
Published in: Methods in Enzymology, 2020
Publisher: Elsevier
DOI: 10.1016/bs.mie.2019.11.011.