Computational Biophotonics for Endoscopic Cancer Diagnosis and Therapy

Analyzing Inverse Problems with Invertible Neural Networks

Autores: Lynton Ardizzone, Jakob Kruse, Sebastian Wirkert, Daniel Rahner, Eric W. Pellegrini, Ralf S. Klessen, Lena Maier-Hein, Carsten Rother, Ullrich Köthe
Publicado en: International Conference on Learning Representations, 2019
Editor: ICLR

Uncertainty handling in intra-operative multispectral imaging with invertible neural networks

Autores: Tim J. Adler, Lynton Ardizzone, Leonardo Ayala, Janek Gröhl, Anant Vemuri, Sebastian J. Wirkert, Beat P. Müller-Stich, Carsten Rother, Ullrich Köthe, Lena Maier-Hein
Publicado en: International Conference on Medical Imaging with Deep Learning, 2019
Editor: OpenReview.net

Freehand photoacoustic tomography for 3D angiography using local gradient information

Autores: Thomas Kirchner, Esther Wild, Klaus H. Maier-Hein, Lena Maier-Hein
Publicado en: Photons Plus Ultrasound: Imaging and Sensing 2016, 2016, Página(s) 97083G
Editor: SPIE
DOI: 10.1117/12.2209368

Tissue classification for laparoscopic image understanding based on multispectral texture analysis

Autores: Yan Zhang, Sebastian J. Wirkert, Justin Iszatt, Hannes Kenngott, Martin Wagner, Benjamin Mayer, Christian Stock, Neil T. Clancy, Daniel S. Elson, Lena Maier-Hein
Publicado en: Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling, 2016, Página(s) 978619
Editor: SPIE
DOI: 10.1117/12.2216090

Photoacoustic monitoring of blood oxygenation during neurosurgical interventions

Autores: Thomas Kirchner, Janek Gröhl, Niklas Holzwarth, Mildred A. Herrera, Adrián Hernández-Aguilera, Edgar Santos, Lena Maier-Hein
Publicado en: Photons Plus Ultrasound: Imaging and Sensing 2019, 2019, Página(s) 11, ISBN 9781510623996
Editor: SPIE
DOI: 10.1117/12.2509608

Confidence estimation for quantitative photoacoustic imaging

Autores: Janek Gröhl, Thomas Kirchner, Lena Maier-Hein
Publicado en: Photons Plus Ultrasound: Imaging and Sensing 2018, 2018, Página(s) 46, ISBN 9781510614741
Editor: SPIE
DOI: 10.1117/12.2288362

Reconstruction of initial pressure from limited view photoacoustic images using deep learning

Autores: Janek Gröhl, Dominik Waibel, Fabian Isensee, Thomas Kirchner, Klaus Maier-Hein, Lena Maier-Hein
Publicado en: Photons Plus Ultrasound: Imaging and Sensing 2018, 2018, Página(s) 98, ISBN 9781510614741
Editor: SPIE
DOI: 10.1117/12.2288353

Real-time blood oxygenation tomography with multispectral photoacoustics

Autores: Thomas Kirchner
Publicado en: 2019
Editor: University Heidelberg
DOI: 10.11588/heidok.00026696

Multispectral image analysis in laparoscopy – A machine learning approach to live perfusion monitoring

Autores: Sebastian J Wirkert
Publicado en: 2018
Editor: KIT Karlsruhe
DOI: 10.5445/ir/1000086188

Anser EMT: the first open-source electromagnetic tracking platform for image-guided interventions

Autores: Herman Alexander Jaeger, Alfred Michael Franz, Kilian O’Donoghue, Alexander Seitel, Fabian Trauzettel, Lena Maier-Hein, Pádraig Cantillon-Murphy
Publicado en: International Journal of Computer Assisted Radiology and Surgery, Edición 12/6, 2017, Página(s) 1059-1067, ISSN 1861-6410
Editor: Springer Verlag
DOI: 10.1007/s11548-017-1568-7

Light source calibration for multispectral imaging in surgery

Autores: Leonardo Ayala, Silvia Seidlitz, Anant Vemuri, Sebastian J. Wirkert, Thomas Kirchner, Tim J. Adler, Christina Engels, Dogu Teber, Lena Maier-Hein
Publicado en: International Journal of Computer Assisted Radiology and Surgery, Edición 15/7, 2020, Página(s) 1117-1125, ISSN 1861-6410
Editor: Springer Verlag
DOI: 10.1007/s11548-020-02195-y

Learned spectral decoloring enables photoacoustic oximetry

Autores: Janek Gröhl, Thomas Kirchner, Tim J. Adler, Lina Hacker, Niklas Holzwarth, Adrián Hernández-Aguilera, Mildred A. Herrera, Edgar Santos, Sarah E. Bohndiek, Lena Maier-Hein
Publicado en: Scientific Reports, Edición 11/1, 2021, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-021-83405-8

MITK-OpenIGTLink for combining open-source toolkits in real-time computer-assisted interventions

Autores: Martin Klemm, Thomas Kirchner, Janek Gröhl, Dominique Cheray, Marco Nolden, Alexander Seitel, Harald Hoppe, Lena Maier-Hein, Alfred M. Franz
Publicado en: International Journal of Computer Assisted Radiology and Surgery, Edición 12/3, 2017, Página(s) 351-361, ISSN 1861-6410
Editor: Springer Verlag
DOI: 10.1007/s11548-016-1488-y

Deep learning for biomedical photoacoustic imaging: A review

Autores: Janek Gröhl, Melanie Schellenberg, Kris Dreher, Lena Maier-Hein
Publicado en: Photoacoustics, Edición 22, 2021, Página(s) 100241, ISSN 2213-5979
Editor: Elsevier GmbH
DOI: 10.1016/j.pacs.2021.100241

Why rankings of biomedical image analysis competitions should be interpreted with care

Autores: Lena Maier-Hein, Matthias Eisenmann, Annika Reinke, Sinan Onogur, Marko Stankovic, Patrick Scholz, Tal Arbel, Hrvoje Bogunovic, Andrew P. Bradley, Aaron Carass, Carolin Feldmann, Alejandro F. Frangi, Peter M. Full, Bram van Ginneken, Allan Hanbury, Katrin Honauer, Michal Kozubek, Bennett A. Landman, Keno März, Oskar Maier, Klaus Maier-Hein, Bjoern H. Menze, Henning Müller, Peter F. Neher, Wiro N
Publicado en: Nature Communications, Edición 9/1, 2018, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-018-07619-7

Context encoding enables machine learning-based quantitative photoacoustics

Autores: Thomas Kirchner, Janek Gröhl, Lena Maier-Hein
Publicado en: Journal of Biomedical Optics, Edición 23/05, 2018, Página(s) 1, ISSN 1083-3668
Editor: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.23.5.056008

Tissue classification for laparoscopic image understanding based on multispectral texture analysis

Autores: Yan Zhang, Sebastian J. Wirkert, Justin Iszatt, Hannes Kenngott, Martin Wagner, Benjamin Mayer, Christian Stock, Neil T. Clancy, Daniel S. Elson, Lena Maier-Hein
Publicado en: Journal of Medical Imaging, Edición 4/1, 2017, Página(s) 015001, ISSN 2329-4302
Editor: SPIE
DOI: 10.1117/1.jmi.4.1.015001

Robust near real-time estimation of physiological parameters from megapixel multispectral images with inverse Monte Carlo and random forest regression

Autores: Sebastian J. Wirkert, Hannes Kenngott, Benjamin Mayer, Patrick Mietkowski, Martin Wagner, Peter Sauer, Neil T. Clancy, Daniel S. Elson, Lena Maier-Hein
Publicado en: International Journal of Computer Assisted Radiology and Surgery, Edición 11/6, 2016, Página(s) 909-917, ISSN 1861-6410
Editor: Springer Verlag
DOI: 10.1007/s11548-016-1376-5

Confidence Estimation for Machine Learning-Based Quantitative Photoacoustics

Autores: Janek Gröhl, Thomas Kirchner, Tim Adler, Lena Maier-Hein
Publicado en: Journal of Imaging, Edición 4/12, 2018, Página(s) 147, ISSN 2313-433X
Editor: MDPI
DOI: 10.3390/jimaging4120147

Uncertainty-aware performance assessment of optical imaging modalities with invertible neural networks

Autores: Tim J. Adler, Lynton Ardizzone, Anant Vemuri, Leonardo Ayala, Janek Gröhl, Thomas Kirchner, Sebastian Wirkert, Jakob Kruse, Carsten Rother, Ullrich Köthe, Lena Maier-Hein
Publicado en: International Journal of Computer Assisted Radiology and Surgery, Edición 14/6, 2019, Página(s) 997-1007, ISSN 1861-6410
Editor: Springer Verlag
DOI: 10.1007/s11548-019-01939-9

Surgical data science for next-generation interventions

Autores: Lena Maier-Hein, Swaroop S. Vedula, Stefanie Speidel, Nassir Navab, Ron Kikinis, Adrian Park, Matthias Eisenmann, Hubertus Feussner, Germain Forestier, Stamatia Giannarou, Makoto Hashizume, Darko Katic, Hannes Kenngott, Michael Kranzfelder, Anand Malpani, Keno März, Thomas Neumuth, Nicolas Padoy, Carla Pugh, Nicolai Schoch, Danail Stoyanov, Russell Taylor, Martin Wagner, Gregory D. Hager, Pierre
Publicado en: Nature Biomedical Engineering, Edición 1/9, 2017, Página(s) 691-696, ISSN 2157-846X
Editor: Springer
DOI: 10.1038/s41551-017-0132-7

Uncertainty-Aware Organ Classification for Surgical Data Science Applications in Laparoscopy

Autores: Moccia Sara, Wirkert Sebastian J., Kenngott Hannes, Vemuri Anant S., Apitz Martin, Mayer Benjamin, De Momi Elena, Mattos Leonardo S., Maier-Hein, Lena
Publicado en: IEEE Transactions on Biomedical Engineering, 2018, ISSN 0018-9294
Editor: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tbme.2018.2813015

Photoacoustics can image spreading depolarization deep in gyrencephalic brain

Autores: Thomas Kirchner, Janek Gröhl, Mildred A. Herrera, Tim Adler, Adrián Hernández-Aguilera, Edgar Santos, Lena Maier-Hein
Publicado en: Scientific Reports, Edición 9/1, 2019, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-019-44935-4

Signed Real-Time Delay Multiply and Sum Beamforming for Multispectral Photoacoustic Imaging

Autores: Thomas Kirchner, Franz Sattler, Janek Gröhl, Lena Maier-Hein
Publicado en: Journal of Imaging, Edición 4/10, 2018, Página(s) 121, ISSN 2313-433X
Editor: MDPI
DOI: 10.3390/jimaging4100121

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