Publications Peer reviewed articles (22) Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages Author(s): Patrick A. de Jonge, F. A. Bastiaan von Meijenfeldt, Laura E. van Rooijen, Stan J. J. Brouns, Bas E. Dutilh Published in: Viruses, Issue 11/12, 2019, Page(s) 1085, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v11121085 An educational guide for nanopore sequencing in the classroom Author(s): Alex N. Salazar, Franklin L. Nobrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C. Haagsma, Anwar Hiralal, Ahmed Mahfouz, Rebecca E. McKenzie, Teunke van Rossum, Stan J. J. Brouns, Thomas Abeel Published in: PLOS Computational Biology, Issue 16/1, 2020, Page(s) e1007314, ISSN 1553-7358 Publisher: PLOS Computational Biology DOI: 10.1371/journal.pcbi.1007314 Direct Visualization of Native CRISPR Target Search in Live Bacteria Reveals Cascade DNA Surveillance Mechanism Author(s): Jochem N.A. Vink, Koen J.A. Martens, Marnix Vlot, Rebecca E. McKenzie, Cristóbal Almendros, Boris Estrada Bonilla, Daan J.W. Brocken, Johannes Hohlbein, Stan J.J. Brouns Published in: Molecular Cell, Issue 77/1, 2020, Page(s) 39-50.e10, ISSN 1097-2765 Publisher: Cell Press DOI: 10.1016/j.molcel.2019.10.021 Adsorption Sequencing as a Rapid Method to Link Environmental Bacteriophages to Hosts Author(s): Patrick A. de Jonge, F.A. Bastiaan von Meijenfeldt, Ana Rita Costa, Franklin L. Nobrega, Stan J.J. Brouns, Bas E. Dutilh Published in: iScience, Issue 23/9, 2020, Page(s) 101439, ISSN 2589-0042 Publisher: Elsevier DOI: 10.1016/j.isci.2020.101439 Harnessing type I CRISPR–Cas systems for genome engineering in human cells Author(s): Peter Cameron, Mary M. Coons, Sanne E. Klompe, Alexandra M. Lied, Stephen C. Smith, Bastien Vidal, Paul D. Donohoue, Tomer Rotstein, Bryan W. Kohrs, David B. Nyer, Rachel Kennedy, Lynda M. Banh, Carolyn Williams, Mckenzi S. Toh, Matthew J. Irby, Leslie S. Edwards, Chun-Han Lin, Arthur L. G. Owen, Tim Künne, John van der Oost, Stan J. J. Brouns, Euan M. Slorach, Chris K. Fuller, Scott Gradia, Stev Published in: Nature Biotechnology, Issue 37/12, 2019, Page(s) 1471-1477, ISSN 1087-0156 Publisher: Nature Publishing Group DOI: 10.1038/s41587-019-0310-0 Conserved motifs in the CRISPR leader sequence control spacer acquisition levels in Type I-D CRISPR-Cas systems Author(s): Sebastian N Kieper, Cristóbal Almendros, Stan J J Brouns Published in: FEMS Microbiology Letters, Issue 366/11, 2019, ISSN 1574-6968 Publisher: Oxford University Press DOI: 10.1093/femsle/fnz129 Systematic analysis of Type I‐E Escherichia coli CRISPR‐Cas PAM sequences ability to promote interference and primed adaptation Author(s): Olga Musharova, Vasily Sitnik, Marnix Vlot, Ekaterina Savitskaya, Kirill A. Datsenko, Andrey Krivoy, Ivan Fedorov, Ekaterina Semenova, Stan J. J. Brouns, Konstantin Severinov Published in: Molecular Microbiology, Issue 111/6, 2019, Page(s) 1558-1570, ISSN 0950-382X Publisher: Blackwell Publishing Inc. DOI: 10.1111/mmi.14237 Molecular and Evolutionary Determinants of Bacteriophage Host Range Author(s): Patrick A. de Jonge, Franklin L. Nobrega, Stan J.J. Brouns, Bas E. Dutilh Published in: Trends in Microbiology, Issue 27/1, 2019, Page(s) 51-63, ISSN 0966-842X Publisher: Elsevier BV DOI: 10.1016/j.tim.2018.08.006 Complete Genome Sequences of Two T4-Like Escherichia coli Bacteriophages Author(s): Ana Rita Costa, Stan J. J. Brouns, Franklin L. Nobrega Published in: Genome Announcements, Issue 6/26, 2018, ISSN 2169-8287 Publisher: American Society for Microbiology Journals DOI: 10.1128/genomea.00586-18 Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR–Cas effector complexes Author(s): Marnix Vlot, Joep Houkes, Silke J A Lochs, Daan C Swarts, Peiyuan Zheng, Tim Kunne, Prarthana Mohanraju, Carolin Anders, Martin Jinek, John van der Oost, Mark J Dickman, Stan J J Brouns Published in: Nucleic Acids Research, Issue 46/2, 2017, Page(s) 873-885, ISSN 0305-1048 Publisher: Oxford University Press DOI: 10.1093/nar/gkx1264 Cas4 Facilitates PAM-Compatible Spacer Selection during CRISPR Adaptation Author(s): Sebastian N. Kieper, Cristóbal Almendros, Juliane Behler, Rebecca E. McKenzie, Franklin L. Nobrega, Anna C. Haagsma, Jochem N.A. Vink, Wolfgang R. Hess, Stan J.J. Brouns Published in: Cell Reports, Issue 22/13, 2018, Page(s) 3377-3384, ISSN 2211-1247 Publisher: Cell Press DOI: 10.1016/j.celrep.2018.02.103 Complete Genome Sequence of the Escherichia coli Phage Ayreon Author(s): Marnix Vlot, Franklin L. Nobrega, Che F. A. Wong, Yue Liu, Stan J. J. Brouns Published in: Genome Announcements, Issue 6/2, 2018, ISSN 2169-8287 Publisher: American Society for Microbiology Journals DOI: 10.1128/genomea.01354-17 Repetitive DNA Reeling by the Cascade-Cas3 Complex in Nucleotide Unwinding Steps Author(s): Luuk Loeff, Stan J.J. Brouns, Chirlmin Joo Published in: Molecular Cell, Issue 70/3, 2018, Page(s) 385-394.e3, ISSN 1097-2765 Publisher: Cell Press DOI: 10.1016/j.molcel.2018.03.031 Role of nucleotide identity in effective CRISPR target escape mutations Author(s): Tim Künne, Yifan Zhu, Fausia da Silva, Nico Konstantinides, Rebecca E McKenzie, Ryan N Jackson, Stan JJ Brouns Published in: Nucleic Acids Research, Issue 46/19, 2018, Page(s) 10395-10404, ISSN 0305-1048 Publisher: Oxford University Press DOI: 10.1093/nar/gky687 CRISPR-Cas: Adapting to change Author(s): Simon A. Jackson, Rebecca E. McKenzie, Robert D. Fagerlund, Sebastian N. Kieper, Peter C. Fineran, Stan J. J. Brouns Published in: Science, Issue 356/6333, 2017, Page(s) eaal5056, ISSN 0036-8075 Publisher: American Association for the Advancement of Science DOI: 10.1126/science.aal5056 Molecular and Evolutionary Determinants of Bacteriophage Host Range Author(s): Patrick A. de Jonge, Franklin L. Nobrega, Stan J.J. Brouns, Bas E. Dutilh Published in: Trends in Microbiology, 2018, ISSN 0966-842X Publisher: Elsevier BV DOI: 10.1016/j.tim.2018.08.006 Targeting mechanisms of tailed bacteriophages Author(s): Franklin L. Nobrega, Marnix Vlot, Patrick A. de Jonge, Lisa L. Dreesens, Hubertus J. E. Beaumont, Rob Lavigne, Bas E. Dutilh, Stan J. J. Brouns Published in: Nature Reviews Microbiology, Issue 16, 2018, Page(s) 760 - 773, ISSN 1740-1526 Publisher: Nature Publishing Group DOI: 10.1038/s41579-018-0070-8 Cas3-Derived Target DNA Degradation Fragments Fuel Primed CRISPR Adaptation Author(s): Tim Künne, Sebastian N. Kieper, Jasper W. Bannenberg, Anne I.M. Vogel, Willem R. Miellet, Misha Klein, Martin Depken, Maria Suarez-Diez, Stan J.J. Brouns Published in: Molecular Cell, Issue 63/5, 2016, Page(s) 852-864, ISSN 1097-2765 Publisher: Cell Press DOI: 10.1016/j.molcel.2016.07.011 An updated evolutionary classification of CRISPR–Cas systems Author(s): Kira S. Makarova, Yuri I. Wolf, Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Sita J. Saunders, Rodolphe Barrangou, Stan J. J. Brouns, Emmanuelle Charpentier, Daniel H. Haft, Philippe Horvath, Sylvain Moineau, Francisco J. M. Mojica, Rebecca M. Terns, Michael P. Terns, Malcolm F. White, Alexander F. Yakunin, Roger A. Garrett, John van der Oost, Rolf Backofen, Eugene V. Koonin Published in: Nature Reviews Microbiology, Issue 13/11, 2015, Page(s) 722-736, ISSN 1740-1526 Publisher: Nature Publishing Group DOI: 10.1038/nrmicro3569 CRISPR interference and priming varies with individual spacer sequences Author(s): Chaoyou Xue, Arun S. Seetharam, Olga Musharova, Konstantin Severinov, Stan J. J. Brouns, Andrew J. Severin, Dipali G. Sashital Published in: Nucleic Acids Research, Issue 43/22, 2015, Page(s) 10831-10847, ISSN 0305-1048 Publisher: Oxford University Press DOI: 10.1093/nar/gkv1259 Using CAPTURE to detect spacer acquisition in native CRISPR arrays Author(s): Rebecca E. McKenzie, Cristóbal Almendros, Jochem N. A. Vink, Stan J. J. Brouns Published in: Nature Protocols, Issue 14/3, 2019, Page(s) 976-990, ISSN 1754-2189 Publisher: Nature Publishing Group DOI: 10.1038/s41596-018-0123-5 Cas4–Cas1 fusions drive efficient PAM selection and control CRISPR adaptation Author(s): Cristóbal Almendros, Franklin L Nobrega, Rebecca E McKenzie, Stan J J Brouns Published in: Nucleic Acids Research, Issue 47/10, 2019, Page(s) 5223-5230, ISSN 0305-1048 Publisher: Oxford University Press DOI: 10.1093/nar/gkz217 Non-peer reviewed articles (1) CRISPR sabotage Author(s): John van der Oost, Stan J. J. Brouns Published in: Genome Biology, Issue 16/1, 2015, Page(s) 1-3, ISSN 1474-760X Publisher: BioMed Central DOI: 10.1186/s13059-015-0820-0 Searching for OpenAIRE data... There was an error trying to search data from OpenAIRE No results available
