Adaptive immunity in prokaryotes: how Bacteria do not forgive and do not forget their enemies

Publicaciones

Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages

Autores: Patrick A. de Jonge, F. A. Bastiaan von Meijenfeldt, Laura E. van Rooijen, Stan J. J. Brouns, Bas E. Dutilh
Publicado en: Viruses, Edición 11/12, 2019, Página(s) 1085, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v11121085

An educational guide for nanopore sequencing in the classroom

Autores: Alex N. Salazar, Franklin L. Nobrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C. Haagsma, Anwar Hiralal, Ahmed Mahfouz, Rebecca E. McKenzie, Teunke van Rossum, Stan J. J. Brouns, Thomas Abeel
Publicado en: PLOS Computational Biology, Edición 16/1, 2020, Página(s) e1007314, ISSN 1553-7358
Editor: PLOS Computational Biology
DOI: 10.1371/journal.pcbi.1007314

Direct Visualization of Native CRISPR Target Search in Live Bacteria Reveals Cascade DNA Surveillance Mechanism

Autores: Jochem N.A. Vink, Koen J.A. Martens, Marnix Vlot, Rebecca E. McKenzie, Cristóbal Almendros, Boris Estrada Bonilla, Daan J.W. Brocken, Johannes Hohlbein, Stan J.J. Brouns
Publicado en: Molecular Cell, Edición 77/1, 2020, Página(s) 39-50.e10, ISSN 1097-2765
Editor: Cell Press
DOI: 10.1016/j.molcel.2019.10.021

Adsorption Sequencing as a Rapid Method to Link Environmental Bacteriophages to Hosts

Autores: Patrick A. de Jonge, F.A. Bastiaan von Meijenfeldt, Ana Rita Costa, Franklin L. Nobrega, Stan J.J. Brouns, Bas E. Dutilh
Publicado en: iScience, Edición 23/9, 2020, Página(s) 101439, ISSN 2589-0042
Editor: Elsevier
DOI: 10.1016/j.isci.2020.101439

Harnessing type I CRISPR–Cas systems for genome engineering in human cells

Autores: Peter Cameron, Mary M. Coons, Sanne E. Klompe, Alexandra M. Lied, Stephen C. Smith, Bastien Vidal, Paul D. Donohoue, Tomer Rotstein, Bryan W. Kohrs, David B. Nyer, Rachel Kennedy, Lynda M. Banh, Carolyn Williams, Mckenzi S. Toh, Matthew J. Irby, Leslie S. Edwards, Chun-Han Lin, Arthur L. G. Owen, Tim Künne, John van der Oost, Stan J. J. Brouns, Euan M. Slorach, Chris K. Fuller, Scott Gradia, Stev
Publicado en: Nature Biotechnology, Edición 37/12, 2019, Página(s) 1471-1477, ISSN 1087-0156
Editor: Nature Publishing Group
DOI: 10.1038/s41587-019-0310-0

Conserved motifs in the CRISPR leader sequence control spacer acquisition levels in Type I-D CRISPR-Cas systems

Autores: Sebastian N Kieper, Cristóbal Almendros, Stan J J Brouns
Publicado en: FEMS Microbiology Letters, Edición 366/11, 2019, ISSN 1574-6968
Editor: Oxford University Press
DOI: 10.1093/femsle/fnz129

Systematic analysis of Type I‐E Escherichia coli CRISPR‐Cas PAM sequences ability to promote interference and primed adaptation

Autores: Olga Musharova, Vasily Sitnik, Marnix Vlot, Ekaterina Savitskaya, Kirill A. Datsenko, Andrey Krivoy, Ivan Fedorov, Ekaterina Semenova, Stan J. J. Brouns, Konstantin Severinov
Publicado en: Molecular Microbiology, Edición 111/6, 2019, Página(s) 1558-1570, ISSN 0950-382X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/mmi.14237

Molecular and Evolutionary Determinants of Bacteriophage Host Range

Autores: Patrick A. de Jonge, Franklin L. Nobrega, Stan J.J. Brouns, Bas E. Dutilh
Publicado en: Trends in Microbiology, Edición 27/1, 2019, Página(s) 51-63, ISSN 0966-842X
Editor: Elsevier BV
DOI: 10.1016/j.tim.2018.08.006

Complete Genome Sequences of Two T4-Like Escherichia coli Bacteriophages

Autores: Ana Rita Costa, Stan J. J. Brouns, Franklin L. Nobrega
Publicado en: Genome Announcements, Edición 6/26, 2018, ISSN 2169-8287
Editor: American Society for Microbiology Journals
DOI: 10.1128/genomea.00586-18

Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR–Cas effector complexes

Autores: Marnix Vlot, Joep Houkes, Silke J A Lochs, Daan C Swarts, Peiyuan Zheng, Tim Kunne, Prarthana Mohanraju, Carolin Anders, Martin Jinek, John van der Oost, Mark J Dickman, Stan J J Brouns
Publicado en: Nucleic Acids Research, Edición 46/2, 2017, Página(s) 873-885, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkx1264

Cas4 Facilitates PAM-Compatible Spacer Selection during CRISPR Adaptation

Autores: Sebastian N. Kieper, Cristóbal Almendros, Juliane Behler, Rebecca E. McKenzie, Franklin L. Nobrega, Anna C. Haagsma, Jochem N.A. Vink, Wolfgang R. Hess, Stan J.J. Brouns
Publicado en: Cell Reports, Edición 22/13, 2018, Página(s) 3377-3384, ISSN 2211-1247
Editor: Cell Press
DOI: 10.1016/j.celrep.2018.02.103

Complete Genome Sequence of the Escherichia coli Phage Ayreon

Autores: Marnix Vlot, Franklin L. Nobrega, Che F. A. Wong, Yue Liu, Stan J. J. Brouns
Publicado en: Genome Announcements, Edición 6/2, 2018, ISSN 2169-8287
Editor: American Society for Microbiology Journals
DOI: 10.1128/genomea.01354-17

Repetitive DNA Reeling by the Cascade-Cas3 Complex in Nucleotide Unwinding Steps

Autores: Luuk Loeff, Stan J.J. Brouns, Chirlmin Joo
Publicado en: Molecular Cell, Edición 70/3, 2018, Página(s) 385-394.e3, ISSN 1097-2765
Editor: Cell Press
DOI: 10.1016/j.molcel.2018.03.031

Role of nucleotide identity in effective CRISPR target escape mutations

Autores: Tim Künne, Yifan Zhu, Fausia da Silva, Nico Konstantinides, Rebecca E McKenzie, Ryan N Jackson, Stan JJ Brouns
Publicado en: Nucleic Acids Research, Edición 46/19, 2018, Página(s) 10395-10404, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gky687

CRISPR-Cas: Adapting to change

Autores: Simon A. Jackson, Rebecca E. McKenzie, Robert D. Fagerlund, Sebastian N. Kieper, Peter C. Fineran, Stan J. J. Brouns
Publicado en: Science, Edición 356/6333, 2017, Página(s) eaal5056, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.aal5056

Targeting mechanisms of tailed bacteriophages

Autores: Franklin L. Nobrega, Marnix Vlot, Patrick A. de Jonge, Lisa L. Dreesens, Hubertus J. E. Beaumont, Rob Lavigne, Bas E. Dutilh, Stan J. J. Brouns
Publicado en: Nature Reviews Microbiology, Edición 16, 2018, Página(s) 760 - 773, ISSN 1740-1526
Editor: Nature Publishing Group
DOI: 10.1038/s41579-018-0070-8

Cas3-Derived Target DNA Degradation Fragments Fuel Primed CRISPR Adaptation

Autores: Tim Künne, Sebastian N. Kieper, Jasper W. Bannenberg, Anne I.M. Vogel, Willem R. Miellet, Misha Klein, Martin Depken, Maria Suarez-Diez, Stan J.J. Brouns
Publicado en: Molecular Cell, Edición 63/5, 2016, Página(s) 852-864, ISSN 1097-2765
Editor: Cell Press
DOI: 10.1016/j.molcel.2016.07.011

An updated evolutionary classification of CRISPR–Cas systems

Autores: Kira S. Makarova, Yuri I. Wolf, Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Sita J. Saunders, Rodolphe Barrangou, Stan J. J. Brouns, Emmanuelle Charpentier, Daniel H. Haft, Philippe Horvath, Sylvain Moineau, Francisco J. M. Mojica, Rebecca M. Terns, Michael P. Terns, Malcolm F. White, Alexander F. Yakunin, Roger A. Garrett, John van der Oost, Rolf Backofen, Eugene V. Koonin
Publicado en: Nature Reviews Microbiology, Edición 13/11, 2015, Página(s) 722-736, ISSN 1740-1526
Editor: Nature Publishing Group
DOI: 10.1038/nrmicro3569

CRISPR interference and priming varies with individual spacer sequences

Autores: Chaoyou Xue, Arun S. Seetharam, Olga Musharova, Konstantin Severinov, Stan J. J. Brouns, Andrew J. Severin, Dipali G. Sashital
Publicado en: Nucleic Acids Research, Edición 43/22, 2015, Página(s) 10831-10847, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkv1259

Using CAPTURE to detect spacer acquisition in native CRISPR arrays

Autores: Rebecca E. McKenzie, Cristóbal Almendros, Jochem N. A. Vink, Stan J. J. Brouns
Publicado en: Nature Protocols, Edición 14/3, 2019, Página(s) 976-990, ISSN 1754-2189
Editor: Nature Publishing Group
DOI: 10.1038/s41596-018-0123-5

Cas4–Cas1 fusions drive efficient PAM selection and control CRISPR adaptation

Autores: Cristóbal Almendros, Franklin L Nobrega, Rebecca E McKenzie, Stan J J Brouns
Publicado en: Nucleic Acids Research, Edición 47/10, 2019, Página(s) 5223-5230, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkz217

CRISPR sabotage

Autores: John van der Oost, Stan J. J. Brouns
Publicado en: Genome Biology, Edición 16/1, 2015, Página(s) 1-3, ISSN 1474-760X
Editor: BioMed Central
DOI: 10.1186/s13059-015-0820-0

Buscando datos de OpenAIRE...

Publicaciones

Compartir esta página

Descargar