Deliverables
D7.2 All ESRs to have completed 3 postgraduate courses and attended 1 scientific conference, as per their PCDP
D2.2 [ESR4] Fungal bioassay, transcriptomics and metabolomics of Saccharina and endophyte pathogensD6.4 PhD awarded to all ALFF ESRs
D3.8 [ESR9] Comparison of the data obtained by the mutant-driven approach with data generated my mass spectrometric identification of signalling molecules
D5.1 [ESR13] strategies for the storage and analysis of temporally- or spatially-resolved metagenomics data.
Supervisory Board of the network
D1.7 [ESR3] Test correlation between Pseudo-nitschzia infections, interrannual variation & toxicity events
D5.6 [ESR15] novel insights into Ectocarpus-Eurychasma interactions and potential effectors
D5.7 [ESR15] novel insights into Ectocarpus-Eurychasma interactions and potential effectors
D3.7 [ESR9] Transposon tagging bacterial mutants failing to induce diatom growth or carbohydrate secretionD37ESR9 Transposon tagging bacterial mutants failing to induce diatom growth or carbohydrate secretion
D2.6 [ESR6] Functional study of eukaryotic-bacterial interactions using DNA stable-isotope probingD4.3 [ESR10] Bacterial localization, transcriptomic & metabolomic profiling along a salinity gradient
Attendance to ALFF courses
"All ESRs to have attended the 6 courses organised by ALFF beneficiaries on 1) Algal Cutluring from the field to the lab; 2) ""Commercial Algal Culturing: technologies, markets and business skills""; 3) ""Metabolomics and experimental design in chemical ecology""; 4) ""Systems biology and bioinformatics""; 5) ""Regulatory Water Quality Monitoring""; 6) ""Science into business""."
D2.7 [ESR6] Insights in the ecological/evolutionary principles underlying the assembly & structure of complex microbial communities in CaulerpaD9.1 All outreach events delivered as per Section 3.3.1
D9.1 All outreach events delivered
D4.5 [ESR11] Transcriptomic & metabolomic profiling of young Ulva germlings during biofilm formationD4.5 [ESR11] Transcriptomic & metabolomic profiling of young Ulva germlings during biofilm formation
D4.7 [ESR12] Proteomic analysis of Marinobacter–algal culturesD4.4 [ESR11] Bioassays on algicidal/beneficial microorganism on development and morphogenesis of Ulva
D44ESR11 Bioassays on algicidalbeneficial microorganism on development and morphogenesis of Ulva
D1.2 Integration of transcriptomics and metabolomics to identify Paraphysoderma nutrients requirements [ESR1] and Seminavis robusta / bacteria [ESR2] interactions.Integration of transcriptomics and metabolomics to identify Paraphysoderma nutrients requirements [ESR1] and Seminavis robusta / bacteria [ESR2] interactions.
D1.5 [ESR2] Mechanisms and first applications of bacterial interference compounds on diatom signallingD2.5 [ESR6] Metagenomic characterization & localization of communities in native and invasive Caulerpa species
D25ESR6 Metagenomic characterization localization of communities in native and invasive Caulerpa species
D4.1 [ESR10] List of bacterial species and cultures necessary for E. subulatus acclimation to freshwaterD41ESR10 List of bacterial species and cultures necessary for E subulatus acclimation to freshwater
D5.3 [ESR14] effects of bacterial communities on Nannochloropsis pathwaysD4.2 [ESR10] Genome (expected nb: 5) sequencing and annotation of Ectocarpus-associated bacteria
D42ESR10 Genome expected nb 5 sequencing and annotation of Ectocarpusassociated bacteria
D3.4 [ESR8] Community composition and chemical nature of biofilms during cultivation of Nannochloropsis and IsochrysisD34ESR8 Community composition and chemical nature of biofilms during cultivation of Nannochloropsis and Isochrysis
D5.4 [ESR14] Public release of upgraded ORCAE platform, incl. systems biology tools & all relevant ALFF datasets
D5.5 [ESR15] Extended ORCAE version with integrated tools for variant (e.g. SNP) analysis
D5.6 [ESR15] Extended ORCAE version with integrated tools for variant (e.g. SNP) analysis
Publications
Author(s):
Hetty KleinJan, Christian Jeanthon, Catherine Boyen, Simon M. Dittami
Published in:
Frontiers in Microbiology, Issue 8, 2017, ISSN 1664-302X
Publisher:
Frontiers Media
DOI:
10.3389/fmicb.2017.02456
Author(s):
Céline C. Allewaert, Noreen Hiegle, Martina Strittmatter, Reinhoud de Blok, Tiago Guerra, Claire M.M. Gachon, Wim Vyverman
Published in:
Algal Research, Issue 31, 2018, Page(s) 282-290, ISSN 2211-9264
Publisher:
Elsevier BV
DOI:
10.1016/j.algal.2018.02.015
Author(s):
Emilio Cirri, Wim Vyverman, Georg Pohnert
Published in:
FEMS Microbiology Ecology, 2018, ISSN 0168-6496
Publisher:
Blackwell
DOI:
10.1093/femsec/fiy161
Author(s):
Sheng-Shan Wang, Rong-Kuen Chen, Kai-Yi Chen, Chu-Yin Liu, Shu-Min Kao, Chia-Lin Chung
Published in:
Breeding Science, Issue 67/4, 2017, Page(s) 340-347, ISSN 1344-7610
Publisher:
Japanese Society of Breeding
DOI:
10.1270/jsbbs.17007
Author(s):
Olivier De Clerck, Shu-Min Kao, Kenny A. Bogaert, Jonas Blomme, Fatima Foflonker, Michiel Kwantes, Emmelien Vancaester, Lisa Vanderstraeten, Eylem Aydogdu, Jens Boesger, Gianmaria Califano, Benedicte Charrier, Rachel Clewes, Andrea Del Cortona, Sofie D’Hondt, Noe Fernandez-Pozo, Claire M. Gachon, Marc Hanikenne, Linda Lattermann, Frederik Leliaert, Xiaojie Liu, Christine A. Maggs, Zoë A. Popper
Published in:
Current Biology, Issue 28/18, 2018, Page(s) 2921-2933.e5, ISSN 0960-9822
Publisher:
Cell Press
DOI:
10.1016/j.cub.2018.08.015
Author(s):
Joshua C. Stein, Yeisoo Yu, Dario Copetti, Derrick J. Zwickl, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna, Jianwei Zhang, Carlos E. M. Londono, Xiang Song, Seunghee Lee, Paul Sanchez, Andrea Zuccolo, Jetty S. S. Ammiraju, Jayson Talag, Ann Danowitz, Luis F. Rivera,
Published in:
Nature Genetics, Issue 50/2, 2018, Page(s) 285-296, ISSN 1061-4036
Publisher:
Nature Publishing Group
DOI:
10.1038/s41588-018-0040-0
Author(s):
Nelzo C. Ereful, Li-Yu Liu, Eric Tsai, Shu-Min Kao, Shalabh Dixit, Ramil Mauleon, Katrina Malabanan, Michael Thomson, Antonio Laurena, David Lee, Ian Mackay, Andy Greenland, Wayne Powell, Hei Leung
Published in:
Rice, Issue 9/1, 2016, ISSN 1939-8425
Publisher:
Springer Pub. Co.,
DOI:
10.1186/s12284-016-0123-4
Author(s):
Pedro Murúa, Frithjof C. Küpper, Liliana A. Muñoz, Miriam Bernard, Akira F. Peters
Published in:
Botanica Marina, Issue 61/4, 2018, Page(s) 343-354, ISSN 0006-8055
Publisher:
Walter de Gruyter GmbH & Co. KG
DOI:
10.1515/bot-2017-0095
Author(s):
Tatiana Yurchenko, Tereza Ševčíková, Pavel Přibyl, Khalid El Karkouri, Vladimír Klimeš, Raquel Amaral, Veronika Zbránková, Eunsoo Kim, Didier Raoult, Lilia M. A. Santos, Marek Eliáš
Published in:
The ISME Journal, Issue 12/9, 2018, Page(s) 2163-2175, ISSN 1751-7362
Publisher:
Nature Publishing Group
DOI:
10.1038/s41396-018-0177-y
Author(s):
Thomas Wichard
Published in:
Frontiers in Marine Science, Issue 3, 2016, ISSN 2296-7745
Publisher:
Frontiers in Marine Science
DOI:
10.3389/fmars.2016.00131
Author(s):
Yacine Badis, Tatyana A. Klochkova, Martina Strittmatter, Andrea Garvetto, Pedro Murúa, J. Craig Sanderson, Gwang Hoon Kim, Claire M. M. Gachon
Published in:
Journal of Applied Phycology, 2018, ISSN 0921-8971
Publisher:
Kluwer Academic Publishers
DOI:
10.1007/s10811-018-1641-9
Author(s):
Andrea Garvetto, Elisabeth Nézan, Yacine Badis, Gwenael Bilien, Paola Arce, Eileen Bresnan, Claire M. M. Gachon, Raffaele Siano
Published in:
Frontiers in Microbiology, Issue 9, 2018, ISSN 1664-302X
Publisher:
Frontiers Media
DOI:
10.3389/fmicb.2018.02918
Author(s):
Cecilia Rad-Menéndez, Mélanie Gerphagnon, Andrea Garvetto, Paola Arce, Yacine Badis, Télesphore Sime-Ngando, Claire M. M. Gachon
Published in:
Applied and Environmental Microbiology, Issue 84/23, 2018, ISSN 0099-2240
Publisher:
American Society for Microbiology
DOI:
10.1128/aem.01826-18
Author(s):
Miriam S. Bernard, Martina Strittmatter, Pedro Murúa, Svenja Heesch, Ga Youn Cho, Catherine Leblanc, Akira F. Peters
Published in:
European Journal of Phycology, Issue 54/1, 2018, Page(s) 39-51, ISSN 0967-0262
Publisher:
Taylor & Francis
DOI:
10.1080/09670262.2018.1502816
Author(s):
Tereza Ševčíková, Tatiana Yurchenko, Karen P Fawley, Raquel Amaral, Hynek Strnad, Lilia M A Santos, Marvin W Fawley, Marek Eliáš
Published in:
Genome Biology and Evolution, Issue 11/2, 2019, Page(s) 362-379, ISSN 1759-6653
Publisher:
Oxford University Press
DOI:
10.1093/gbe/evz004
Author(s):
Simon M Dittami, Enrique Arboleda, Jean-Christophe Auguet, Arite Bigalke, Enora Briand, Paco Cárdenas, Ulisse Cardini, Johan Decelle, Aschwin Engelen, Damien Eveillard, Claire M.M. Gachon, Sarah Griffiths, Tilmann Harder, Ehsan Kayal, Elena Kazamia, François H Lallier, Mónica Media, Ezequiel M. Marzinelli, Teresa Morganti, Laura Núñez Pons, Soizic Prado, José Pintado, Mahasweta Saha, Marc
Published in:
Peer J, 2019, ISSN 2167-8359
Publisher:
PeerJ
DOI:
10.7287/peerj.preprints.27519v1
Author(s):
Miriam Bernard, Sylvie Rousvoal, Bertrand Jacquemin, Marion Ballenghien, Akira F. Peters, Catherine Leblanc
Published in:
Journal of Applied Phycology, Issue 30/5, 2018, Page(s) 2901-2911, ISSN 0921-8971
Publisher:
Kluwer Academic Publishers
DOI:
10.1007/s10811-017-1367-0
Author(s):
Frederike Stock, Michail Syrpas, Shiri Graff van Creveld, Simon Backx, Lander Blommaert, Lachlan Dow, Willem Stock, Ewout Ruysbergh, Bernard Lepetit, Benjamin Bailleul, Koen Sabbe, Norbert De Kimpe, Anne Willems, Peter G. Kroth, Assaf Vardi, Wim Vyverman, Sven Mangelinckx
Published in:
ACS Chemical Biology, Issue 14/2, 2019, Page(s) 198-203, ISSN 1554-8929
Publisher:
American Chemical Society
DOI:
10.1021/acschembio.8b01101
Author(s):
Taghreed Alsufyani, Anne Weiss, Thomas Wichard
Published in:
Marine Drugs, Issue 15/1, 2017, Page(s) 14, ISSN 1660-3397
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/md15010014
Author(s):
Emilio Cirri, Katharina Grosser, Georg Pohnert
Published in:
Biofouling, Issue 32/2, 2016, Page(s) 145-153, ISSN 0892-7014
Publisher:
Taylor & Francis
DOI:
10.1080/08927014.2015.1130823
Author(s):
Tatiana Yurchenko, Tereza Ševčíková, Hynek Strnad, Anzhelika Butenko, Marek Eliáš
Published in:
Open Biology, Issue 6/11, 2016, Page(s) 160249, ISSN 2046-2441
Publisher:
Royal Society Publishing
DOI:
10.1098/rsob.160249
Author(s):
Kessler, Ralf W.; Weiss, Anne; Kuegler, Stefan; Hermes, Cornelia; Wichard, Thomas
Published in:
Molecular Ecology, Issue 2, 2018, ISSN 1365-294X
Publisher:
Wiley
DOI:
10.5281/zenodo.2580629
Author(s):
Emilio Cirri, Georg Pohnert
Published in:
Protocols for Macroalgae Research, 2018, Page(s) 31-321, ISBN 9781-351132954
Publisher:
Taylor & Francis
DOI:
10.1201/b21460
Author(s):
Gianmaria Califano, Thomas Wichard
Published in:
Protocols for Macroalgae Research, 2018
Publisher:
Francis & Taylor Group
DOI:
10.5281/zenodo.2578236
Author(s):
C Kuhlisch, G Califano, T Wichard, G Pohnert
Published in:
Protocols for Macroalgae Research, 2018
Publisher:
Francis & Taylor Group
DOI:
10.5281/zenodo.2578249
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