Rezultaty Other (19) D7.1 All ESRs to have completed 3 postgraduate courses and attended 1 scientific conference, as per their PCDP D7.2 All ESRs to have completed 3 postgraduate courses and attended 1 scientific conference, as per their PCDP D2.2 [ESR4] Fungal bioassay, transcriptomics and metabolomics of Saccharina and endophyte pathogens D6.4 PhD awarded to all ALFF ESRs D3.8 [ESR9] Comparison of the data obtained by the mutant-driven approach with data generated my mass spectrometric identification of signalling molecules D5.1 [ESR13] strategies for the storage and analysis of temporally- or spatially-resolved metagenomics data. Supervisory Board of the network D1.7 [ESR3] Test correlation between Pseudo-nitschzia infections, interrannual variation & toxicity events D5.6 [ESR15] novel insights into Ectocarpus-Eurychasma interactions and potential effectors D5.7 [ESR15] novel insights into Ectocarpus-Eurychasma interactions and potential effectors D3.7 [ESR9] Transposon tagging bacterial mutants failing to induce diatom growth or carbohydrate secretion D37ESR9 Transposon tagging bacterial mutants failing to induce diatom growth or carbohydrate secretion D2.6 [ESR6] Functional study of eukaryotic-bacterial interactions using DNA stable-isotope probing D4.3 [ESR10] Bacterial localization, transcriptomic & metabolomic profiling along a salinity gradient Attendance to ALFF courses "All ESRs to have attended the 6 courses organised by ALFF beneficiaries on 1) Algal Cutluring from the field to the lab; 2) ""Commercial Algal Culturing: technologies, markets and business skills""; 3) ""Metabolomics and experimental design in chemical ecology""; 4) ""Systems biology and bioinformatics""; 5) ""Regulatory Water Quality Monitoring""; 6) ""Science into business""." D2.7 [ESR6] Insights in the ecological/evolutionary principles underlying the assembly & structure of complex microbial communities in Caulerpa D9.1 All outreach events delivered as per Section 3.3.1 D9.1 All outreach events delivered D4.5 [ESR11] Transcriptomic & metabolomic profiling of young Ulva germlings during biofilm formation D4.5 [ESR11] Transcriptomic & metabolomic profiling of young Ulva germlings during biofilm formation D4.7 [ESR12] Proteomic analysis of Marinobacter–algal cultures D4.4 [ESR11] Bioassays on algicidal/beneficial microorganism on development and morphogenesis of Ulva D44ESR11 Bioassays on algicidalbeneficial microorganism on development and morphogenesis of Ulva D1.2 Integration of transcriptomics and metabolomics to identify Paraphysoderma nutrients requirements [ESR1] and Seminavis robusta / bacteria [ESR2] interactions. Integration of transcriptomics and metabolomics to identify Paraphysoderma nutrients requirements [ESR1] and Seminavis robusta / bacteria [ESR2] interactions. D1.5 [ESR2] Mechanisms and first applications of bacterial interference compounds on diatom signalling Documents, reports (6) D3.9 [ESR9] Mimicking the effects of identified substances on biofilm formation in biofilm growth chambers D2.5 [ESR6] Metagenomic characterization & localization of communities in native and invasive Caulerpa species D25ESR6 Metagenomic characterization localization of communities in native and invasive Caulerpa species D4.1 [ESR10] List of bacterial species and cultures necessary for E. subulatus acclimation to freshwater D41ESR10 List of bacterial species and cultures necessary for E subulatus acclimation to freshwater D5.3 [ESR14] effects of bacterial communities on Nannochloropsis pathways D4.2 [ESR10] Genome (expected nb: 5) sequencing and annotation of Ectocarpus-associated bacteria D42ESR10 Genome expected nb 5 sequencing and annotation of Ectocarpusassociated bacteria D3.4 [ESR8] Community composition and chemical nature of biofilms during cultivation of Nannochloropsis and Isochrysis D34ESR8 Community composition and chemical nature of biofilms during cultivation of Nannochloropsis and Isochrysis Websites, patent fillings, videos etc. (3) D8.1 Release of ALFF-derived Open Access resources in collaboration with the UNU-INWEH D5.4 [ESR14] Public release of upgraded ORCAE platform, incl. systems biology tools & all relevant ALFF datasets D5.5 [ESR15] Extended ORCAE version with integrated tools for variant (e.g. SNP) analysis D5.6 [ESR15] Extended ORCAE version with integrated tools for variant (e.g. SNP) analysis Publikacje Peer reviewed articles (22) Exploring the Cultivable Ectocarpus Microbiome Autorzy: Hetty KleinJan, Christian Jeanthon, Catherine Boyen, Simon M. Dittami Opublikowane w: Frontiers in Microbiology, Issue 8, 2017, ISSN 1664-302X Wydawca: Frontiers Media DOI: 10.3389/fmicb.2017.02456 Life history determinants of the susceptibility of the blood alga Haematococcu s to infection by Paraphysoderma sedebokerense (Blastocladiomycota) Autorzy: Céline C. Allewaert, Noreen Hiegle, Martina Strittmatter, Reinhoud de Blok, Tiago Guerra, Claire M.M. Gachon, Wim Vyverman Opublikowane w: Algal Research, Issue 31, 2018, Page(s) 282-290, ISSN 2211-9264 Wydawca: Elsevier BV DOI: 10.1016/j.algal.2018.02.015 Biofilm interactions – bacteria modulate sexual reproduction success of the diatom Seminavis robusta Autorzy: Emilio Cirri, Wim Vyverman, Georg Pohnert Opublikowane w: FEMS Microbiology Ecology, 2018, ISSN 0168-6496 Wydawca: Blackwell DOI: 10.1093/femsec/fiy161 Genetic mapping of the <i>qSBN7</i> locus, a QTL controlling secondary branch number per panicle in rice Autorzy: Sheng-Shan Wang, Rong-Kuen Chen, Kai-Yi Chen, Chu-Yin Liu, Shu-Min Kao, Chia-Lin Chung Opublikowane w: Breeding Science, Issue 67/4, 2017, Page(s) 340-347, ISSN 1344-7610 Wydawca: Japanese Society of Breeding DOI: 10.1270/jsbbs.17007 Insights into the Evolution of Multicellularity from the Sea Lettuce Genome Autorzy: Olivier De Clerck, Shu-Min Kao, Kenny A. Bogaert, Jonas Blomme, Fatima Foflonker, Michiel Kwantes, Emmelien Vancaester, Lisa Vanderstraeten, Eylem Aydogdu, Jens Boesger, Gianmaria Califano, Benedicte Charrier, Rachel Clewes, Andrea Del Cortona, Sofie D’Hondt, Noe Fernandez-Pozo, Claire M. Gachon, Marc Hanikenne, Linda Lattermann, Frederik Leliaert, Xiaojie Liu, Christine A. Maggs, Zoë A. Popper Opublikowane w: Current Biology, Issue 28/18, 2018, Page(s) 2921-2933.e5, ISSN 0960-9822 Wydawca: Cell Press DOI: 10.1016/j.cub.2018.08.015 Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza Autorzy: Joshua C. Stein, Yeisoo Yu, Dario Copetti, Derrick J. Zwickl, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna, Jianwei Zhang, Carlos E. M. Londono, Xiang Song, Seunghee Lee, Paul Sanchez, Andrea Zuccolo, Jetty S. S. Ammiraju, Jayson Talag, Ann Danowitz, Luis F. Rivera, Opublikowane w: Nature Genetics, Issue 50/2, 2018, Page(s) 285-296, ISSN 1061-4036 Wydawca: Nature Publishing Group DOI: 10.1038/s41588-018-0040-0 Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs Autorzy: Nelzo C. Ereful, Li-Yu Liu, Eric Tsai, Shu-Min Kao, Shalabh Dixit, Ramil Mauleon, Katrina Malabanan, Michael Thomson, Antonio Laurena, David Lee, Ian Mackay, Andy Greenland, Wayne Powell, Hei Leung Opublikowane w: Rice, Issue 9/1, 2016, ISSN 1939-8425 Wydawca: Springer Pub. Co., DOI: 10.1186/s12284-016-0123-4 Microspongium alariae in Alaria esculenta: a widely-distributed non-parasitic brown algal endophyte that shows cell modifications within its host Autorzy: Pedro Murúa, Frithjof C. Küpper, Liliana A. Muñoz, Miriam Bernard, Akira F. Peters Opublikowane w: Botanica Marina, Issue 61/4, 2018, Page(s) 343-354, ISSN 0006-8055 Wydawca: Walter de Gruyter GmbH & Co. KG DOI: 10.1515/bot-2017-0095 A gene transfer event suggests a long-term partnership between eustigmatophyte algae and a novel lineage of endosymbiotic bacteria Autorzy: Tatiana Yurchenko, Tereza Ševčíková, Pavel Přibyl, Khalid El Karkouri, Vladimír Klimeš, Raquel Amaral, Veronika Zbránková, Eunsoo Kim, Didier Raoult, Lilia M. A. Santos, Marek Eliáš Opublikowane w: The ISME Journal, Issue 12/9, 2018, Page(s) 2163-2175, ISSN 1751-7362 Wydawca: Nature Publishing Group DOI: 10.1038/s41396-018-0177-y Identification of Metallophores and Organic Ligands in the Chemosphere of the Marine Macroalga Ulva (Chlorophyta) and at Land-Sea Interfaces Autorzy: Thomas Wichard Opublikowane w: Frontiers in Marine Science, Issue 3, 2016, ISSN 2296-7745 Wydawca: Frontiers in Marine Science DOI: 10.3389/fmars.2016.00131 Novel species of the oomycete Olpidiopsis potentially threaten European red algal cultivation Autorzy: Yacine Badis, Tatyana A. Klochkova, Martina Strittmatter, Andrea Garvetto, Pedro Murúa, J. Craig Sanderson, Gwang Hoon Kim, Claire M. M. Gachon Opublikowane w: Journal of Applied Phycology, 2018, ISSN 0921-8971 Wydawca: Kluwer Academic Publishers DOI: 10.1007/s10811-018-1641-9 Novel Widespread Marine Oomycetes Parasitising Diatoms, Including the Toxic Genus Pseudo-nitzschia: Genetic, Morphological, and Ecological Characterisation Autorzy: Andrea Garvetto, Elisabeth Nézan, Yacine Badis, Gwenael Bilien, Paola Arce, Eileen Bresnan, Claire M. M. Gachon, Raffaele Siano Opublikowane w: Frontiers in Microbiology, Issue 9, 2018, ISSN 1664-302X Wydawca: Frontiers Media DOI: 10.3389/fmicb.2018.02918 Rediscovering Zygorhizidium affluens Canter: Molecular Taxonomy, Infectious Cycle, and Cryopreservation of a Chytrid Infecting the Bloom-Forming Diatom Asterionella formosa Autorzy: Cecilia Rad-Menéndez, Mélanie Gerphagnon, Andrea Garvetto, Paola Arce, Yacine Badis, Télesphore Sime-Ngando, Claire M. M. Gachon Opublikowane w: Applied and Environmental Microbiology, Issue 84/23, 2018, ISSN 0099-2240 Wydawca: American Society for Microbiology DOI: 10.1128/aem.01826-18 Diversity, biogeography and host specificity of kelp endophytes with a focus on the genera Laminarionema and Laminariocolax (Ectocarpales, Phaeophyceae) Autorzy: Miriam S. Bernard, Martina Strittmatter, Pedro Murúa, Svenja Heesch, Ga Youn Cho, Catherine Leblanc, Akira F. Peters Opublikowane w: European Journal of Phycology, Issue 54/1, 2018, Page(s) 39-51, ISSN 0967-0262 Wydawca: Taylor & Francis DOI: 10.1080/09670262.2018.1502816 Plastid Genomes and Proteins Illuminate the Evolution of Eustigmatophyte Algae and Their Bacterial Endosymbionts Autorzy: Tereza Ševčíková, Tatiana Yurchenko, Karen P Fawley, Raquel Amaral, Hynek Strnad, Lilia M A Santos, Marvin W Fawley, Marek Eliáš Opublikowane w: Genome Biology and Evolution, Issue 11/2, 2019, Page(s) 362-379, ISSN 1759-6653 Wydawca: Oxford University Press DOI: 10.1093/gbe/evz004 A community perspective on the concept of marine holobionts: state-of-the-art, challenges, and future directions Autorzy: Simon M Dittami, Enrique Arboleda, Jean-Christophe Auguet, Arite Bigalke, Enora Briand, Paco Cárdenas, Ulisse Cardini, Johan Decelle, Aschwin Engelen, Damien Eveillard, Claire M.M. Gachon, Sarah Griffiths, Tilmann Harder, Ehsan Kayal, Elena Kazamia, François H Lallier, Mónica Media, Ezequiel M. Marzinelli, Teresa Morganti, Laura Núñez Pons, Soizic Prado, José Pintado, Mahasweta Saha, Marc Opublikowane w: Peer J, 2019, ISSN 2167-8359 Wydawca: PeerJ DOI: 10.7287/peerj.preprints.27519v1 qPCR-based relative quantification of the brown algal endophyte Laminarionema elsbetiae in Saccharina latissima: variation and dynamics of host—endophyte interactions Autorzy: Miriam Bernard, Sylvie Rousvoal, Bertrand Jacquemin, Marion Ballenghien, Akira F. Peters, Catherine Leblanc Opublikowane w: Journal of Applied Phycology, Issue 30/5, 2018, Page(s) 2901-2911, ISSN 0921-8971 Wydawca: Kluwer Academic Publishers DOI: 10.1007/s10811-017-1367-0 N -Acyl Homoserine Lactone Derived Tetramic Acids Impair Photosynthesis in Phaeodactylum tricornutum Autorzy: Frederike Stock, Michail Syrpas, Shiri Graff van Creveld, Simon Backx, Lander Blommaert, Lachlan Dow, Willem Stock, Ewout Ruysbergh, Bernard Lepetit, Benjamin Bailleul, Koen Sabbe, Norbert De Kimpe, Anne Willems, Peter G. Kroth, Assaf Vardi, Wim Vyverman, Sven Mangelinckx Opublikowane w: ACS Chemical Biology, Issue 14/2, 2019, Page(s) 198-203, ISSN 1554-8929 Wydawca: American Chemical Society DOI: 10.1021/acschembio.8b01101 Time Course Exo-Metabolomic Profiling in the Green Marine Macroalga Ulva (Chlorophyta) for Identification of Growth Phase-Dependent Biomarkers Autorzy: Taghreed Alsufyani, Anne Weiss, Thomas Wichard Opublikowane w: Marine Drugs, Issue 15/1, 2017, Page(s) 14, ISSN 1660-3397 Wydawca: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/md15010014 A solid phase extraction based non-disruptive sampling technique to investigate the surface chemistry of macroalgae Autorzy: Emilio Cirri, Katharina Grosser, Georg Pohnert Opublikowane w: Biofouling, Issue 32/2, 2016, Page(s) 145-153, ISSN 0892-7014 Wydawca: Taylor & Francis DOI: 10.1080/08927014.2015.1130823 The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite Autorzy: Tatiana Yurchenko, Tereza Ševčíková, Hynek Strnad, Anzhelika Butenko, Marek Eliáš Opublikowane w: Open Biology, Issue 6/11, 2016, Page(s) 160249, ISSN 2046-2441 Wydawca: Royal Society Publishing DOI: 10.1098/rsob.160249 Macroalgal-bacterial interactions: Role of dimethylsulfoniopropionate in microbial gardening by Ulva (Chlorophyta) Autorzy: Kessler, Ralf W.; Weiss, Anne; Kuegler, Stefan; Hermes, Cornelia; Wichard, Thomas Opublikowane w: Molecular Ecology, Issue 2, 2018, ISSN 1365-294X Wydawca: Wiley DOI: 10.5281/zenodo.2580629 Monographic books (1) Protocols for Macroalgae Research Autorzy: Emilio Cirri, Georg Pohnert Opublikowane w: Protocols for Macroalgae Research, 2018, Page(s) 31-321, ISBN 9781-351132954 Wydawca: Taylor & Francis DOI: 10.1201/b21460 Book chapters (2) Preparation of axenic cultures in Ulva (Chlorophyta) Autorzy: Gianmaria Califano, Thomas Wichard Opublikowane w: Protocols for Macroalgae Research, 2018 Wydawca: Francis & Taylor Group DOI: 10.5281/zenodo.2578236 Metabolomics of intra- and extracellular metabolites from micro- and macroalgae using GC-MS and LC-MS Autorzy: C Kuhlisch, G Califano, T Wichard, G Pohnert Opublikowane w: Protocols for Macroalgae Research, 2018 Wydawca: Francis & Taylor Group DOI: 10.5281/zenodo.2578249 Wyszukiwanie danych OpenAIRE... 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