Datasets for specific TF and histones modification in the developing zebrafish embryo.
CAGE RNA-seq datasets for the early zebrafish embryo
ESR16 together with ESR15 will write a manuscript for publication to open the DCC data, for example in the “Scientific Data” journal. due date: manuscript for submission ready November 2018
Methods to profile epigenome and transcriptome of low cell number populations and single cells
RNA-seq datasets from zebrafish developmental transitions, including lncRNAs and mobile genomic elements.
Reports on functional validation of zebrafish and human sequence variants
ESR3 and ESR14 collected zebrafish sequencing data from the ZENCODE-ITN members together with structured data annotation. The pilot study showed that scaling up of this effort toward the whole zebrafish community will require large efforts for the curation of the collected data and the collected data annotation. ESR15 as research assistant will conduct the careful data annotation which will facilitate the establishment of the most comprehensive zebrafish sequencing data repository
Searching for OpenAIRE data...
Author(s): Swarnima Joshi, Sanamjeet Virdi, Christelle Etard, Robert Geisler, Uwe Strähle
Published in: PLOS ONE, 13/11, 2018, Page(s) e0207747, ISSN 1932-6203
Publisher: Public Library of Science
Author(s): Hyun-Woo Jeong, Benjamín Hernández-Rodríguez, JungMo Kim, Kee-Pyo Kim, Rocio Enriquez-Gasca, Juyong Yoon, Susanne Adams, Hans R. Schöler, Juan M. Vaquerizas, Ralf H. Adams
Published in: Nature Communications, 8/1, 2017, ISSN 2041-1723
Publisher: Nature Publishing Group
Author(s): Clemens B. Hug, Juan M. Vaquerizas
Published in: Trends in Genetics, 34/12, 2018, Page(s) 903-914, ISSN 0168-9525
Publisher: Elsevier BV
Author(s): Kai Kruse, Clemens B. Hug, Benjamín Hernández-Rodríguez, Juan M. Vaquerizas
Published in: Bioinformatics, 32/20, 2016, Page(s) 3190-3192, ISSN 1367-4803
Publisher: Oxford University Press