High-throughput in vivo studies on posttranscriptional regulatory mechanisms mediated by bacterial 3'-UTRs

Project Information

ReguloBac-3UTR

Grant agreement ID: 646869

DOI

10.3030/646869

Project closed

EC signature date 15 June 2015

Start date 1 September 2015

End date 31 August 2020

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 876 778,00

EU contribution

€ 1 876 778,00

Coordinated by

AGENCIA ESTATAL CONSEJO SUPERIOR DE INVESTIGACIONES CIENTIFICAS
Spain

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Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (10)

RNA thermoswitches modulate Staphylococcus aureus adaptation to ambient temperatures

Author(s): Arancha Catalan-Moreno, Marta Cela, Pilar Menendez-Gil, Naiara Irurzun, Carlos J. Caballero, Isabelle Caldelari and Alejandro Toledo-Arana
Published in: Nucleic Acids Research, Issue 49/6, 2021, Page(s) 3409-3426, ISSN 1362-4962
Publisher: Oxford University Press
DOI: 10.1093/nar/gkab117

Staphylococcus aureus ftnA 3’-untranslated region modulates ferritin production facilitating growth under iron starvation conditions

Author(s): Pilar Menendez-Gil, Arancha Catalan-Moreno, Carlos J. Caballero and Alejandro Toledo-Arana
Published in: Frontiers in Microbiology, Issue 13, 2022, Page(s) 838042, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2022.838042

The regulon of the RNA chaperone CspA and its auto-regulation in Staphylococcus aureus

Author(s): Carlos J Caballero, Pilar Menendez-Gil, Arancha Catalan-Moreno, Marta Vergara-Irigaray, Begoña García, Víctor Segura, Naiara Irurzun, Maite Villanueva, Igor Ruiz de los Mozos, Cristina Solano, Iñigo Lasa, Alejandro Toledo-Arana
Published in: Nucleic Acids Research, Issue 46/3, 2018, Page(s) 1345-1361, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkx1284

Noncontiguous operon is a genetic organization for coordinating bacterial gene expression

Author(s): S. Sáenz-Lahoya, N. Bitarte, B. García, S. Burgui, M. Vergara-Irigaray, J. Valle, C. Solano, A. Toledo-Arana, I. Lasa
Published in: Proceedings of the National Academy of Sciences, Issue 116/5, 2019, Page(s) 1733-1738, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1812746116

A multifaceted small RNA modulates gene expression upon glucose limitation in Staphylococcus aureus

Author(s): Delphine Bronesky, Emma Desgranges, Anna Corvaglia, Patrice François, Carlos J Caballero, Laura Prado, Alejandro Toledo‐Arana, Inigo Lasa, Karen Moreau, François Vandenesch, Stefano Marzi, Pascale Romby, Isabelle Caldelari
Published in: The EMBO Journal, Issue 38/6, 2019, ISSN 0261-4189
Publisher: Nature Publishing Group
DOI: 10.15252/embj.201899363

Advances in bacterial transcriptome understanding: From overlapping transcription to the excludon concept

Author(s): Alejandro Toledo‐Arana, Iñigo Lasa
Published in: Molecular Microbiology, Issue 113/3, 2020, Page(s) 593-602, ISSN 0950-382X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mmi.14456

Differential evolution in 3′UTRs leads to specific gene expression in Staphylococcus

Author(s): Pilar Menendez-Gil, Carlos J Caballero, Arancha Catalan-Moreno, Naiara Irurzun, Inigo Barrio-Hernandez, Isabelle Caldelari, Alejandro Toledo-Arana
Published in: Nucleic Acids Research, Issue 48/5, 2020, Page(s) 2544-2563, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkaa047

One evolutionarily selected amino acid variation is sufficient to provide functional specificity in the cold shock protein paralogs of Staphylococcus aureus

Author(s): Arancha Catalan‐Moreno, Carlos J. Caballero, Naiara Irurzun, Sergio Cuesta, Jacinto López‐Sagaseta, Alejandro Toledo‐Arana
Published in: Molecular Microbiology, Issue 113, 2020, Page(s) 826-840, ISSN 0950-382X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mmi.14446

Regulation of Heterogenous LexA Expression in Staphylococcus aureus by an Antisense RNA Originating from Transcriptional Read-Through upon Natural Mispairings in the sbrBIntrinsic Terminator

Author(s): Laurène Bastet, Pilar Bustos-Sanmamed, Arancha Catalan-Moreno, Carlos J. Caballero, Sergio Cuesta, Leticia Matilla-Cuenca, Maite Villanueva, Jaione Valle, Iñigo Lasa and Alejandro Toledo-Arana
Published in: International Journal of Molecular Sciences, Issue 23, 2022, Page(s) 576, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23010576

Bacterial 3′UTRs: A Useful Resource in Post-transcriptional Regulation

Author(s): Pilar Menendez-Gil, Alejandro Toledo-Arana
Published in: Frontiers in Molecular Biosciences, Issue 7, 2021, ISSN 2296-889X
Publisher: Frontiers Media SA
DOI: 10.3389/fmolb.2020.617633

Conference proceedings (6)

An antisense RNA connects SOS-response to cellular stress

Author(s): L. Bastet, C. Caballero, M. Villanueva, I. Lasa y A. Toledo-Arana
Published in: FEMS 2017: 7th Congress of European Microbiologists, Issue 1, 2017
Publisher: FEMS

Identification and characterization of RNA-binding proteins in Staphylococcus aureus

Author(s): A. Catalán, C. Caballero and A. Toledo-Arana
Published in: FEMS 2017: 7th Congress of European Microbiologists, Issue 1, 2017
Publisher: FEMS

3’UTRs: new post-transcriptional regulatory elements in bacteria

Author(s): P. Menéndez-Gil, C. Caballero and A. Toledo-Arana
Published in: FEMS 2017: 7th Congress of European Microbiologists, Issue 1, 2017
Publisher: FEMS

Evolución diferencial de las 3'UTRs en bacterias

Author(s): P. Menendez-Gil, C. Caballero, A. Toledo-Arana
Published in: XI Molecular Microbiology Meeting of the Spanish Society of Microbiology, Issue 1, 2016
Publisher: SEM

Caracterización funcional de las chaperonas de RNA en Staphylococcus aureus

Author(s): C. Caballero, A. Catalán Moreno, M. Vergara-Irigaray, B. García, C. Solano Goñi, I. Lasa, A. Toledo-Arana
Published in: XI Molecular Microbiology Meeting of the Spanish Society of Microbiology, Issue 1, 2016
Publisher: SEM

Un tránscrito antisentido conecta el estrés celular con la respuesta SOS

Author(s): L. Bastet, C. Caballero, M. Villanueva, I. Lasa, A. Toledo-Arana
Published in: XI Molecular Microbiology Meeting of the Spanish Society of Microbiology, Issue 1, 2016
Publisher: SEM

Book chapters (1)

Fluorescent Molecular Beacons Mimicking RNA Secondary Structures to Study RNA Chaperone Activity

Author(s): Pilar Menendez-Gil, Carlos J. Caballero, Cristina Solano, Alejandro Toledo-Arana
Published in: RNA Chaperones - Methods and Protocols, Issue 2106, 2020, Page(s) 41-58, ISBN 978-1-0716-0230-0
Publisher: Springer US
DOI: 10.1007/978-1-0716-0231-7_3