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Protein design from sub-domain sized fragments

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach (opens in new window)

Author(s): Sergio Romero-Romero, Miguel Costas, Daniel-Adriano Silva Manzano, Sina Kordes, Erendira Rojas-Ortega, Cinthya Tapia, Yasel Guerra, Sooruban Shanmugaratnam, Adela Rodríguez-Romero, David Baker, Birte Höcker, D. Alejandro Fernández-Velasco
Published in: Journal of Molecular Biology, Issue 433/18, 2021, Page(s) 167153, ISSN 0022-2836
Publisher: Academic Press
DOI: 10.1016/j.jmb.2021.167153

ProteinTools: a toolkit to analyze protein structures (opens in new window)

Author(s): Noelia Ferruz, Steffen Schmidt, Birte Höcker
Published in: Nucleic Acids Research, Issue 49/W1, 2021, Page(s) W559-W566, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkab375

Strategies for designing non-natural enzymes and binders (opens in new window)

Author(s): Horst Lechner, Noelia Ferruz, Birte Höcker
Published in: Current Opinion in Chemical Biology, Issue 47, 2018, Page(s) 67-76, ISSN 1367-5931
Publisher: Elsevier BV
DOI: 10.1016/j.cbpa.2018.07.022

Reconstructing the Remote Origins of a Fold Singleton from a Flavodoxin-Like Ancestor (opens in new window)

Author(s): Saacnicteh Toledo-Patiño, Manish Chaubey, Murray Coles, Birte Höcker
Published in: Biochemistry, Issue 58/48, 2019, Page(s) 4790-4793, ISSN 0006-2960
Publisher: American Chemical Society
DOI: 10.1021/acs.biochem.9b00900

Identification and Analysis of Natural Building Blocks for Evolution-Guided Fragment-Based Protein Design (opens in new window)

Author(s): Noelia Ferruz, Francisco Lobos, Dominik Lemm, Saacnicteh Toledo-Patino, José Arcadio Farías-Rico, Steffen Schmidt, Birte Höcker
Published in: Journal of Molecular Biology, 2020, ISSN 0022-2836
Publisher: Academic Press
DOI: 10.1016/j.jmb.2020.04.013

Fuzzle 2.0: Ligand Binding in Natural Protein Building Blocks (opens in new window)

Author(s): Noelia Ferruz, Florian Michel, Francisco Lobos, Steffen Schmidt, Birte Höcker
Published in: Frontiers in Molecular Biosciences, Issue 8, 2021, ISSN 2296-889X
Publisher: Frontiers Media S.A..
DOI: 10.3389/fmolb.2021.715972

Evolution, folding, and design of TIM barrels and related proteins (opens in new window)

Author(s): Sergio Romero-Romero, Sina Kordes, Florian Michel, Birte Höcker
Published in: Current Opinion in Structural Biology, Issue 68, 2021, Page(s) 94-104, ISSN 0959-440X
Publisher: Elsevier BV
DOI: 10.1016/j.sbi.2020.12.007

Protlego: A Python package for the analysis and design of chimeric proteins (opens in new window)

Author(s): Noelia Ferruz; Jakob Noske; Birte Hoecker
Published in: Bioinformatics, 2021, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1101/2020.10.04.325555

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