Clinical recruitment has been completed and exceeded or almost met recruitment targets. Independent analysis of genetic, biochemical and metabolomic data revealed a spectrum of mitochondrially associated dysfunction in idiopathic Parkinson’s disease patients. It has been possible to stratify such patients by their degree of mitochondrial dysfunction as assessed by biochemical assays, however, in order to increase our confidence in this stratification, further work to complement the genetic and biochemical assays with metabolomic and integrative computational analyses is required. Computational modelling of neuronal metabolism has been used to predict a set of therapeutic targets for monogenic and idiopathic PD with mitochondrial dysfunction. In vitro phenotyping of stem cell derived cultures from monogenic PD patients with mitochondrial dysfunction has been challenging due to ostensibly intrinsic variability between cell lines. Nevertheless, partners have identified a number of repurposed compounds capable of ameliorating mitochondrial phenotypes observed in patient stem cell derived cell culture models. Furthermore, humanised mouse modelling has demonstrated a beneficial effect of a candidate neuroprotectant on Pink1 oxygenation profiles as assessed by live amperometry, a form of electrical readout made specific to oxygen levels. Integrative analysis of amperometry data together with metabolomic data on microdialysis samples is ongoing in an attempt to mechanistically underpin these amperometry results. Altogether, SysMedPD has begun to develop new candidate neuroprotection compounds that show promise to ameliorate the effects of monogenic PD with mitochondrial dysfunction. Whether these compounds can slow the progression of neurodegeneration in idiopathic Parkinson’s disease patients with mitochondrial dysfunction will require future research and development.