Capacity Building at InBIO for Research and Innovation Using Environmental Metagenomics

Livrables

Report on the information for Horizon 2020 Key Performance Indicators

Report all publications (in the particular field of research) of the coordinator and of InBIO during the three years preceding the start date of the project, in order to prepare baseline information on Key Performance Indicators, as described in Task 1.3.

Data Management Plan

Document detailing the Data Management Plan, including information on what data the project will generate, how it will be exploited and made accessible for verification and re-use, and how it will be curated and preserved.

Minutes of Kick-off Meeting

Document providing the minutes of the kick-off meeting of the project.

Second Media Clipping of InBIO and EnvMetaGen impact

Report documenting how the ERA Chair and InBIO has featured in the media (newspapers, journals, TV, Radio), during the second 24-month period of the project.

Final Report

Final report of the project, detailing how each task was developed, and how the project fulfilled its objectives, meeting the overall goal of raising the capacity of InBIO, and its profile in the ERA.

Protocol for field collection and preservation of eDNA samples

Document detailing the development of best practice regarding the collection and conservation of eDNA samples, focusing on a wide range of potential applications that can help boosting InBIO’s capacity (e.g., water from lentic and lotic environments, bulk samples of terrestrial and freshwater organisms, vertebrate faecal material), as described in Task 4.2.

Protocol for next-gen analysis of eDNA samples

Document detailing the development of best practice for analysing eDNA samples, including procedures to solve outstanding challenges that have recently been identified.

Quality Plan

Document detailing the quality procedures and standards for all major project activities, as described in Task 1.1.

Protocol for the processing of DNA sequence data generated by next-gen platforms

Document detailing the development of best practice for analysing the outputs of next-gen DNA sequencing platforms, as described in Task 4.2.

First Progress Report

Report detailing the progress of the project during the first 15 months.

Second Progress Report

Report detailing the progress of the project during the first 36 months.

First Media Clipping of InBIO and EnvMetaGen impact

Report documenting how the ERA Chair and InBIO has featured in the media (newspapers, journals, TV, Radio), during the first 24 months of the project.

Protocol for building and organising reference collections of DNA sequences

Document detailing the development of best practice for building DNA reference collections of voucher specimens identified by specialised taxonomists, as detailed in Task 4.2.

Report on the selection process of the ERA Chair holder

Report on the selection process of the ERA Chair holder, including the text of the vacancy notice, places of publication, composition of the selection panel, CVs of applicants, minutes of selection panel meeting(s) as well as any other document allowing for a full assessment of the openness of the selection procedure.

Publications

A Conserved Notochord Enhancer Controls Pancreas Development in Vertebrates

Auteurs: João Pedro Amorim, Ana Gali-Macedo, Hugo Marcelino, Renata Bordeira-Carriço, Silvia Naranjo, Solangel Rivero-Gil, Joana Teixeira, Mafalda Galhardo, Joana Marques, José Bessa
Publié dans: Cell Reports, Numéro 32/1, 2020, Page(s) 107862, ISSN 2211-1247
Éditeur: Cell Press
DOI: 10.1016/j.celrep.2020.107862

Speeding up the detection of invasive aquatic species using environmental DNA and nanopore sequencing

Auteurs: Bastian Egeter, Joana Veríssimo, Manuel Lopes-Lima, Joana Pinto, Nicoletta Riccardi, Pedro Beja and Nuno A Fonseca
Publié dans: bioRxiv, 2020, ISSN 0362-4331
Éditeur: New York Times Company

The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese Diptera 01

Auteurs: Sonia Ferreira, Rui Andrade, Ana Gonçalves, Pedro Sousa, Joana Paupério, Nuno Fonseca, Pedro Beja
Publié dans: Biodiversity Data Journal, Numéro 8, 2020, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.8.e49985

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

Auteurs: Jan Pawlowski, Mary Kelly-Quinn, Florian Altermatt, Laure Apothéloz-Perret-Gentil, Pedro Beja, Angela Boggero, Angel Borja, Agnès Bouchez, Tristan Cordier, Isabelle Domaizon, Maria Joao Feio, Ana Filipa Filipe, Riccardo Fornaroli, Wolfram Graf, Jelger Herder, Berry van der Hoorn, J. Iwan Jones, Marketa Sagova-Mareckova, Christian Moritz, Jose Barquín, Jeremy J. Piggott, Maurizio Pinna, Frederic
Publié dans: Science of The Total Environment, Numéro 637-638, 2018, Page(s) 1295-1310, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2018.05.002

The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera

Auteurs: Sonia Ferreira, José Manuel Tierno de Figueroa, Filipa Martins, Joana Verissimo, Lorenzo Quaglietta, José Manuel Grosso-Silva, Pedro Lopes, Pedro Sousa, Joana Paupério, Nuno Fonseca, Pedro Beja
Publié dans: Biodiversity Data Journal, Numéro 8, 2020, ISSN 1314-2828
Éditeur: Pensoft Publisher
DOI: 10.3897/bdj.8.e55137

Complete Genome Sequences of Walnut-Associated Xanthomonas euroxanthea Strains CPBF 367 and CPBF 426 Obtained by Illumina/Nanopore Hybrid Assembly

Auteurs: Miguel Teixeira, Leonor Martins, Camila Fernandes, Cátia Chaves, Joana Pinto, Fernando Tavares, Nuno A. Fonseca
Publié dans: Microbiology Resource Announcements, Numéro 9/45, 2020, ISSN 2576-098X
Éditeur: American Society for Microbiology
DOI: 10.1128/mra.00902-20

High‐resolution multi‐marker DNA metabarcoding reveals sexual dietary differentiation in a bird with minor dimorphism

Auteurs: Luís P. Silva, Vanessa A. Mata, Pedro B. Lopes, Ricardo J. Lopes, Pedro Beja
Publié dans: Ecology and Evolution, Numéro 10/19, 2020, Page(s) 10364-10373, ISSN 2045-7758
Éditeur: John Wiley and Sons Ltd
DOI: 10.1002/ece3.6687

Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring – the need for calibration experiments

Auteurs: Rosetta Blackman, Elvira Mächler, Florian Altermatt, Amanda Arnold, Pedro Beja, Pieter Boets, Bastian Egeter, Vasco Elbrecht, Ana Filipa Filipe, John Jones, Jan Macher, Markus Majaneva, Filipa Martins, Cesc Múrria, Kristian Meissner, Jan Pawlowski, Paul Schmidt Yáñez, Vera Zizka, Florian Leese, Benjamin Price, Kristy Deiner
Publié dans: Metabarcoding and Metagenomics, Numéro 3, 2019, ISSN 2534-9708
Éditeur: Pensoft Publishers
DOI: 10.3897/mbmg.3.34735

Responses of soil microbiota and nematodes to application of organic and inorganic fertilizers in grassland columns

Auteurs: Israel Ikoyi, Bastian Egeter, Cátia Chaves, Mohammed Ahmed, Andrew Fowler, Achim Schmalenberger
Publié dans: Biology and Fertility of Soils, Numéro 56/5, 2020, Page(s) 647-662, ISSN 0178-2762
Éditeur: Springer Verlag
DOI: 10.1007/s00374-020-01440-5

Efficient assessment of nocturnal flying insect communities by combining automatic light traps and DNA metabarcoding

Auteurs: Vanessa A. Mata, Sónia Ferreira, Rebeca M. Campos, Luís P. Silva, Joana Veríssimo, Martin F. V. Corley, Pedro Beja
Publié dans: Environmental DNA, 2020, ISSN 2637-4943
Éditeur: Wiley Online Library
DOI: 10.1002/edn3.125

Gastric Microbiome Diversities in Gastric Cancer Patients from Europe and Asia Mimic the Human Population Structure and Are Partly Driven by Microbiome Quantitative Trait Loci

Auteurs: Bruno Cavadas, Rui Camacho, Joana C. Ferreira, Rui M. Ferreira, Ceu Figueiredo, Alvis Brazma, Nuno A. Fonseca, Luísa Pereira
Publié dans: Microorganisms, Numéro 8/8, 2020, Page(s) 1196, ISSN 2076-2607
Éditeur: MDPI
DOI: 10.3390/microorganisms8081196

Origin and history of Phoxinus (Cyprinidae) introductions in the Douro Basin (Iberian Peninsula): an update inferred from genetic data

Auteurs: Aina Garcia-Raventós, Filipa M. S. Martins, Amilcar Teixeira, Ronaldo Sousa, Elsa Froufe, Simone Varandas, Manuel Lopes-Lima, Pedro Beja, Ana Filipa Filipe
Publié dans: Biological Invasions, Numéro 22/8, 2020, Page(s) 2409-2419, ISSN 1387-3547
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10530-020-02279-5

First complete mitochondrial genomes of molossid bats (Chiroptera: Molossidae)

Auteurs: Vanessa A. Mata, Francisco Amorim, Antonio Guillén-Servent, Pedro Beja, Hugo Rebelo
Publié dans: Mitochondrial DNA Part B, Numéro 2/1, 2017, Page(s) 152-154, ISSN 2380-2359
Éditeur: Taylor and Francis Online
DOI: 10.1080/23802359.2017.1298419

Modelling technical and biological biases in macroinvertebrate community assessment from bulk preservative using multiple metabarcoding markers

Auteurs: Filipa M. S. Martins, Miguel Porto, Maria J. Feio, Bastian Egeter, Aurélie Bonin, Sónia R. Q. Serra, Pierre Taberlet, Pedro Beja
Publié dans: Molecular Ecology, 2020, ISSN 0962-1083
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/mec.15620

Species detection from aquatic eDNA: Assessing the importance of capture methods

Auteurs: Sara Peixoto, Cátia Chaves, Guillermo Velo‐Antón, Pedro Beja, Bastian Egeter
Publié dans: Environmental DNA, 2020, ISSN 2637-4943
Éditeur: John Wiley & Sons Ltd/Wiley Online Library
DOI: 10.1002/edn3.130

How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis

Auteurs: Vanessa A. Mata, Hugo Rebelo, Francisco Amorim, Gary F. McCracken, Simon Jarman, Pedro Beja
Publié dans: Molecular Ecology, Numéro 28/2, 2018, Page(s) 165-175, ISSN 0962-1083
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/mec.14779

DNA barcoding of Sialis sp. (Megaloptera) in Portugal: the missing tool to species identification

Auteurs: Sónia Ferreira, Joana Paupério, José Manuel Grosso-Silva, Pedro Beja
Publié dans: Aquatic Insects, Numéro 40/2, 2019, Page(s) 173-184, ISSN 0165-0424
Éditeur: Swets & Zeitlinger
DOI: 10.1080/01650424.2019.1571612

Glacial cycles drive rapid divergence of cryptic field vole species

Auteurs: Nicholas K. Fletcher, Pelayo Acevedo, Jeremy S. Herman, Joana Paupério, Paulo C. Alves, Jeremy B. Searle
Publié dans: Ecology and Evolution, Numéro 9/24, 2019, Page(s) 14101-14113, ISSN 2045-7758
Éditeur: John Wiley and Sons Ltd
DOI: 10.1002/ece3.5846

Drivers of survival in a small mammal of conservation concern: An assessment using extensive genetic non-invasive sampling in fragmented farmland

Auteurs: António Proença-Ferreira, Clara Ferreira, Inês Leitão, Joana Paupério, Helena Sabino-Marques, Soraia Barbosa, Xavier Lambin, Paulo Célio Alves, Pedro Beja, Francisco Moreira, António Mira, Ricardo Pita
Publié dans: Biological Conservation, Numéro 230, 2019, Page(s) 131-140, ISSN 0006-3207
Éditeur: Elsevier BV
DOI: 10.1016/j.biocon.2018.12.021

What Is the Giant Wall Gecko Having for Dinner? Conservation Genetics for Guiding Reserve Management in Cabo Verde

Auteurs: Catarina Pinho, Bárbara Santos, Vanessa Mata, Mariana Seguro, Maria Romeiras, Ricardo Lopes, Raquel Vasconcelos
Publié dans: Genes, Numéro 9/12, 2018, Page(s) 599, ISSN 2073-4425
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes9120599

Hidden in our pockets: building of a DNA barcode library unveils the first record of Myotis alcathoe for Portugal

Auteurs: Hugo Rebelo, Sónia Ferreira, Francisco Amorim, Pedro Horta, Helena Raposeira, Helena Santos, Pedro Beja, Vanessa Mata
Publié dans: Biodiversity Data Journal, Numéro 8, 2020, ISSN 1314-2828
Éditeur: Pensoft Publisher
DOI: 10.3897/bdj.8.e54479

New and interesting Portuguese Lepidoptera records from 2018 (Insecta: Lepidoptera)

Auteurs: MFV Corley, J Nunes, J Rosete and S Ferreira
Publié dans: SHILAP Revista de lepidopterología, 2019, ISSN 0300-5267
Éditeur: Sociedad Hispano-Luso-Americana de Lepidopterologia

Intricate trophic links between threatened vertebrates confined to a small island in the Atlantic Ocean

Auteurs: Ricardo J. Lopes, Catarina J. Pinho, Bárbara Santos, Mariana Seguro, Vanessa A. Mata, Bastian Egeter, Raquel Vasconcelos
Publié dans: Ecology and Evolution, Numéro 9/8, 2019, Page(s) 4994-5002, ISSN 2045-7758
Éditeur: John Wiley and Sons Ltd
DOI: 10.1002/ece3.5105

A taxonomic revision of the Western Palaearctic genus Cacochroa Heinemann, 1870 (Lepidoptera, Depressariidae, Cryptolechiinae) with description of a new genus and a new species

Auteurs: MARTIN CORLEY, SÓNIA FERREIRA
Publié dans: Zootaxa, Numéro 4683/2, 2019, Page(s) 197-214, ISSN 1175-5326
Éditeur: Magnolia Press
DOI: 10.11646/zootaxa.4683.2.2

Genetic non-invasive sampling (gNIS) as a cost-effective tool for monitoring elusive small mammals

Auteurs: Clara Mendes Ferreira, Helena Sabino-Marques, Soraia Barbosa, Pedro Costa, Cláudia Encarnação, Russell Alpizar-Jara, Ricardo Pita, Pedro Beja, António Mira, Jeremy B. Searle, Joana Paupério, Paulo Célio Alves
Publié dans: European Journal of Wildlife Research, Numéro 64/4, 2018, ISSN 1612-4642
Éditeur: Springer Verlag
DOI: 10.1007/s10344-018-1188-8

Taxonomic notes on Portuguese Microlepidoptera II. Cochylimorpha punctiferana (Ragonot, 1881) stat. rev., a neglected Portuguese species (Lepidoptera: Tortricidae)

Auteurs: MFV Corely and S Ferreira
Publié dans: SHILAP Revista de lepidopterología, 2020, ISSN 0300-5267
Éditeur: Sociedad Hispano-Luso-Americana de Lepidopterologia

Optimised scat collection protocols for dietary DNA metabarcoding in vertebrates

Auteurs: Julie C. McInnes, Rachael Alderman, Bruce E. Deagle, Mary-Anne Lea, Ben Raymond, Simon N. Jarman
Publié dans: Methods in Ecology and Evolution, 2016, ISSN 2041-210X
Éditeur: John Wiley and Sons Inc.
DOI: 10.1111/2041-210X.12677

Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal

Auteurs: Martin F.V. Corley, Sónia Ferreira, Alexander L. Lvovsky, Jorge Rosete
Publié dans: Nota Lepidopterologica, Numéro 40/1, 2017, Page(s) 15-24, ISSN 0342-7536
Éditeur: Apollo Books
DOI: 10.3897/nl.40.10938

DNA Barcoding reveals sexual dimorphism in Isotrias penedana Trematerra, 2013 (Lepidoptera: Tortricidae, Chlidanotinae)

Auteurs: MARTIN FRANCIS VANNER CORLEY, SÓNIA FERREIRA
Publié dans: Zootaxa, Numéro 4221/5, 2017, Page(s) 594, ISSN 1175-5326
Éditeur: Magnolia Press
DOI: 10.11646/zootaxa.4221.5.7

Complete Genomic Sequences of Rabbit Hemorrhagic Disease Virus G1 Strains Isolated in the European Rabbit Original Range

Auteurs: J. Abrantes, A. M. Lopes, P. J. Esteves
Publié dans: Journal of Virology, Numéro 0022538X, 2012, Page(s) 13886-13886, ISSN 0022-538X
Éditeur: American Society for Microbiology
DOI: 10.1128/JVI.02683-12

Identification, Rearing, and Distribution of Stick Insects of Madeira Island: An Example of Raising Biodiversity Awareness

Auteurs: António M. F. Aguiar, Dora Aguin Pombo, Ysabel M. Gonçalves
Publié dans: Journal of Insect Science, Numéro 15362442, 2014, Page(s) 1-13, ISSN 1536-2442
Éditeur: Library of the University of Arizona
DOI: 10.1673/031.014.49

Pathways for resilience in Mediterranean cork oak land use systems

Auteurs: Vanda Acácio, Milena Holmgren
Publié dans: Annals of Forest Science, Numéro 12864560, 2014, Page(s) 5-13, ISSN 1286-4560
Éditeur: Springer Verlag
DOI: 10.1007/s13595-012-0197-0

Cryptic Speciation Patterns in Iranian Rock Lizards Uncovered by Integrative Taxonomy

Auteurs: Faraham Ahmadzadeh, Morris Flecks, Miguel A. Carretero, Omid Mozaffari, Wolfgang Böhme, D. James Harris, Susana Freitas, Dennis Rödder
Publié dans: PLoS ONE, Numéro 19326203, 2013, Page(s) e80563, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0080563

Shifting protected areas: scheduling spatial priorities under climate change

Auteurs: Diogo Alagador, Jorge Orestes Cerdeira, Miguel Bastos Araújo
Publié dans: Journal of Applied Ecology, Numéro 00218901, 2014, Page(s) 703-713, ISSN 0021-8901
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1365-2664.12230

Climate, social factors and research disturbance influence population dynamics in a declining sociable weaver metapopulation

Auteurs: Res Altwegg, Claire Doutrelant, Mark D. Anderson, Claire N. Spottiswoode, Rita Covas
Publié dans: Oecologia, Numéro 00298549, 2014, Page(s) 413-425, ISSN 0029-8549
Éditeur: Springer Verlag
DOI: 10.1007/s00442-013-2768-7

Genetic diversity of Plasmodium falciparum and distribution of drug resistance haplotypes in Yemen

Auteurs: Salama Al-Hamidhi, Mohammed AK Mahdy, Zainab Al-Hashami, Hissa Al-Farsi, Abdulsalam M Al-mekhlafi, Mohamed A Idris, Albano Beja-Pereira, Hamza A Babiker
Publié dans: Malaria Journal, Numéro 14752875, 2013, Page(s) 244, ISSN 1475-2875
Éditeur: BioMed Central
DOI: 10.1186/1475-2875-12-244

Indicators of movement and space use for two co-occurring invasive crayfish species

Auteurs: P.M. Anastácio, F. Banha, C. Capinha, J.M. Bernardo, A.M. Costa, A. Teixeira, S. Bruxelas
Publié dans: Ecological Indicators, Numéro 1470160X, 2015, Page(s) 171-181, ISSN 1470-160X
Éditeur: Elsevier BV
DOI: 10.1016/j.ecolind.2015.01.019

Genetic diversity, structure and conservation of the endangered Cantabrian Capercaillie in a unique peripheral habitat

Auteurs: Fernando Alda, Manuel A. González, Pedro P. Olea, Vicente Ena, Raquel Godinho, Sergei V. Drovetski
Publié dans: European Journal of Wildlife Research, Numéro 16124642, 2013, Page(s) 719-728, ISSN 1612-4642
Éditeur: Springer Verlag
DOI: 10.1007/s10344-013-0727-6

Designing Optimized Multi-Species Monitoring Networks to Detect Range Shifts Driven by Climate Change: A Case Study with Bats in the North of Portugal

Auteurs: Francisco Amorim, Sílvia B. Carvalho, João Honrado, Hugo Rebelo
Publié dans: PLoS ONE, Numéro 19326203, 2014, Page(s) e87291, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0087291

Effects of hunting management on Mediterranean farmland birds

Auteurs: JESÚS CARO, MIGUEL DELIBES-MATEOS, ALBA ESTRADA, RUI BORRALHO, LUÍS GORDINHO, LUÍS REINO, PEDRO BEJA, BEATRIZ ARROYO
Publié dans: Bird Conservation International, Numéro 09592709, 2015, Page(s) 166-181, ISSN 0959-2709
Éditeur: Cambridge University Press
DOI: 10.1017/S0959270914000197

Sete Cidades and Furnas lake eutrophication (São Miguel, Azores): Analysis of long-term monitoring data and remediation measures

Auteurs: J. Virgílio Cruz, Dina Pacheco, João Porteiro, Raquel Cymbron, Sandra Mendes, Andrea Malcata, César Andrade
Publié dans: Science of The Total Environment, Numéro 00489697, 2015, Page(s) 168-186, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2015.03.052

Conifer-plantation thinning restores reptile biodiversity in Mediterranean landscapes

Auteurs: Jairo S. Azor, Xavier Santos, Juan M. Pleguezuelos
Publié dans: Forest Ecology and Management, Numéro 03781127, 2015, Page(s) 185-189, ISSN 0378-1127
Éditeur: Elsevier BV
DOI: 10.1016/j.foreco.2015.06.020

Revisiting the Iberian honey bee ( Apis mellifera iberiensis ) contact zone: maternal and genome-wide nuclear variations provide support for secondary contact from historical refugia

Auteurs: Julio Chávez-Galarza, Dora Henriques, J. Spencer Johnston, Miguel Carneiro, José Rufino, John C. Patton, M. Alice Pinto
Publié dans: Molecular Ecology, Numéro 09621083, 2015, Page(s) 2973-2992, ISSN 0962-1083
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/mec.13223

exonsampler : a computer program for genome-wide and candidate gene exon sampling for targeted next-generation sequencing

Auteurs: Ted Cosart, Albano Beja-Pereira, Gordon Luikart
Publié dans: Molecular Ecology Resources, Numéro 1755098X, 2014, Page(s) 1296-1301, ISSN 1755-098X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.12267

The dispersal of alien species redefines biogeography in the Anthropocene

Auteurs: C. Capinha, F. Essl, H. Seebens, D. Moser, H. M. Pereira
Publié dans: Science, Numéro 00368075, 2015, Page(s) 1248-1251, ISSN 0036-8075
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/science.aaa8913

ENiRG: R-GRASS interface for efficiently characterizing the ecological niche of species and predicting habitat suitability

Auteurs: F. Cánovas, C. Magliozzi, F. Mestre, J. A. Palazón, M. González-Wangüemert
Publié dans: Ecography, Numéro 09067590, 2015, Page(s) n/a-n/a, ISSN 0906-7590
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/ecog.01426

Unravelling biodiversity, evolution and threats to conservation in the Sahara-Sahel

Auteurs: José C. Brito, Raquel Godinho, Fernando Martínez-Freiría, Juan M. Pleguezuelos, Hugo Rebelo, Xavier Santos, Cândida G. Vale, Guillermo Velo-Antón, Zbyszek Boratyński, Sílvia B. Carvalho, Sónia Ferreira, Duarte V. Gonçalves, Teresa L. Silva, Pedro Tarroso, João C. Campos, João V. Leite, Joana Nogueira, Francisco Álvares, Neftalí Sillero, Andack S. Sow, Soumia Fahd, Pierre-André Crochet, Salvador Carranza
Publié dans: Biological Reviews, Numéro 14647931, 2014, Page(s) 215-231, ISSN 1464-7931
Éditeur: Cambridge University Press
DOI: 10.1111/brv.12049

Tools for exploring habitat suitability for steppe birds under land use change scenarios

Auteurs: Laura Cardador, Miquel De Cáceres, David Giralt, Gerard Bota, Núria Aquilué, Beatriz Arroyo, François Mougeot, Carlos Cantero-Martínez, Lourdes Viladomiu, Jordi Rosell, Fabián Casas, Alba Estrada, Jorge Álvaro-Fuentes, Lluís Brotons
Publié dans: Agriculture, Ecosystems & Environment, Numéro 01678809, 2015, Page(s) 119-125, ISSN 0167-8809
Éditeur: Elsevier BV
DOI: 10.1016/j.agee.2014.11.013

New species of Rissoidae (Mollusca, Gastropoda) from the Archipelago of the Azores (northeast Atlantic) with an updated regional checklist for the family

Auteurs: Ricardo Cordeiro, Sérgio Ávila
Publié dans: ZooKeys, Numéro 13132989, 2015, Page(s) 1-19, ISSN 1313-2989
Éditeur: Pensoft Publishers
DOI: 10.3897/zookeys.480.8599

Temporally unpredictable supplementary feeding may benefit endangered scavengers

Auteurs: Eneko Arrondo, Ainara Cortés-Avizanda, José Antonio Donázar
Publié dans: Ibis, Numéro 00191019, 2015, Page(s) 648-651, ISSN 0019-1019
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/ibi.12267

A multi-scale analysis to support the implementation of a regional conservation policy in a small-island archipelago – the Azores, Portugal.

Auteurs: Helena Calado, Chiara Bragagnolo, Susana F. Silva, Margarida Pereira
Publié dans: Journal of Coastal Research, Numéro 07490208, 2014, Page(s) 485-489, ISSN 0749-0208
Éditeur: Coastal Education & Research Foundation, Inc.
DOI: 10.2112/SI70-082.1

Widespread presence of the pathogenic fungus Batrachochytrium dendrobatidis in wild amphibian communities in Madagascar

Auteurs: Molly C. Bletz, Gonçalo M. Rosa, Franco Andreone, Elodie A. Courtois, Dirk S. Schmeller, Nirhy H. C. Rabibisoa, Falitiana C. E. Rabemananjara, Liliane Raharivololoniaina, Miguel Vences, Ché Weldon, Devin Edmonds, Christopher J. Raxworthy, Reid N. Harris, Matthew C. Fisher, Angelica Crottini
Publié dans: Scientific Reports, Numéro 20452322, 2015, Page(s) 8633, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/srep08633

Genetic identification of Iberian rodent species using both mitochondrial and nuclear loci: application to noninvasive sampling

Auteurs: S. Barbosa, J. Pauperio, J. B. Searle, P. C. Alves
Publié dans: Molecular Ecology Resources, Numéro 1755098X, 2013, Page(s) 43-56, ISSN 1755-098X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.12024

Arthropod Diversity in a Tropical Forest

Auteurs: Y. Basset, L. Cizek, P. Cuenoud, R. K. Didham, F. Guilhaumon, O. Missa, V. Novotny, F. Odegaard, T. Roslin, J. Schmidl, A. K. Tishechkin, N. N. Winchester, D. W. Roubik, H.-P. Aberlenc, J. Bail, H. Barrios, J. R. Bridle, G. Castano-Meneses, B. Corbara, G. Curletti, W. Duarte da Rocha, D. De Bakker, J. H. C. Delabie, A. Dejean, L. L. Fagan, A. Floren, R. L. Kitching, E. Medianero, S. E. Miller, E. Gama de Oliveira, J. Orivel, M. Pollet, M. Rapp, S. P. Ribeiro, Y. Roisin, J. B. Schmidt, L. Sorensen, M. Leponce
Publié dans: Science, Numéro 00368075, 2012, Page(s) 1481-1484, ISSN 0036-8075
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Extreme genetic diversity in the lizard Atlantolacerta andreanskyi (Werner, 1929): A montane cryptic species complex

Auteurs: Mafalda Barata, Salvador Carranza, D Harris
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Species-people correlations and the need to account for survey effort in biodiversity analyses

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Complete genome sequence of two rabbit hemorrhagic disease virus variant b isolates detected on the Iberian Peninsula

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Genomic Resources Notes Accepted 1 August 2014-30 September 2014

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Use of Four Next-Generation Sequencing Platforms to Determine HIV-1 Coreceptor Tropism

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Influence of past agricultural fragmentation to the genetic structure of Juniperus oxycedrus in a Mediterranean landscape

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Hidden diversity in wild Beta taxa from Portugal: Insights from genome size and ploidy level estimations using flow cytometry

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Structure and functioning of intertidal food webs along an avian flyway: a comparative approach using stable isotopes

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Morphology and molecules reveal two new species of the poorly studied gecko genus Paragehyra (Squamata: Gekkonidae) from Madagascar

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Relationships between helminth communities and diet in Canarian lizards: the evidence from Gallotia atlantica (Squamata: Lacertidae)

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Ecological Marginalization Facilitated Diversification in Conifers

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A rapid method for species identification and interspecies introgression based on a PCR–RFLP: application to the closely related Neotropical toads Rhinella marina and R. schneideri (Anura: Bufonidae)

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Steep clines within a highly permeable genome across a hybrid zone between two subspecies of the European rabbit

Auteurs: Miguel Carneiro, Stuart J. E. Baird, Sandra Afonso, Esther Ramirez, Pedro Tarroso, Henrique Teotónio, Rafael Villafuerte, Michael W. Nachman, Nuno Ferrand
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The iterative process of plant species inventorying for obtaining reliable biodiversity patterns

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Analysing how drivers of agricultural land abandonment affect biodiversity and cultural landscapes using case studies from Scandinavia, Iberia and Oceania

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Modelling geographic distribution and detecting conservation gaps in Italy for the threatened beetle Rosalia alpina

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Does GenBank provide a reliable DNA barcode reference to identify small alien oysters invading the Mediterranean Sea?

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Microsatellite markers unravel the population genetic structure of the Azorean Leontodon: implications in conservation

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Biogeographical patterns in the diet of an opportunistic predator: the red fox Vulpes vulpes in the Iberian Peninsula

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Effects of forest certification on the ecological condition of Mediterranean streams

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Is forest certification targeting areas of high biodiversity in cork oak savannas?

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Mediterranean amphibians and the loss of temporary ponds: Are there alternative breeding habitats?

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Forecasting fish distribution along stream networks: brown trout ( Salmo trutta ) in Europe

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Adapted conservation measures are required to save the Iberian lynx in a changing climate

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A novel downscaling approach to predict plant invasions and improve local conservation actions

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Local extinctions and range contraction of the endangered Coenagrion mercuriale in North Africa

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Tools for integrating range change, extinction risk and climate change information into conservation management

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Globalizing Conservation Efforts to Save Species and Enhance Food Production

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Species' intrinsic traits inform their range limitations and vulnerability under environmental change

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Modelling distribution in European stream macroinvertebrates under future climates

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Assessing the impact of hunting pressure on population structure of Guinea baboons (Papio papio) in Guinea-Bissau

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Whole-Genome Sequencing of Tibetan Macaque (Macaca thibetana) Provides New Insight into the Macaque Evolutionary History

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Global agricultural expansion and carnivore conservation biogeography

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Molecular richness and biotechnological potential of bacteria cultured from Irciniidae sponges in the north-east Atlantic

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Retracted: Lizards could be warming faster than climate

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Evaluating the combined effects of climate and land-use change on tree species distributions

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Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest

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Multiple Dimensions of Climate Change and Their Implications for Biodiversity

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Satellite Earth observation data to identify anthropogenic pressures in selected protected areas

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Survey of Hepatozoon (Apicomplexa, Hepatozoidae) Blood Parasites in Small Mammals and Snakes from the Huyck Preserve, New York

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Impact of landscape on spatial genetic structure and diversity of Coenagrion mercuriale (Zygoptera:Coenagrionidae) in northern France

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Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia

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Genetic diversity and matrilineal genetic signature of native Ethiopian donkeys (Equus asinus) inferred from mitochondrial DNA sequence polymorphism

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Combining distribution modelling and non-invasive genetics to improve range shift forecasting

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Geographical surrogates of genetic variation for selecting island populations for conservation

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A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing

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Ecological networks: delving into the architecture of biodiversity

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Population genetic structure and conservation of the Azorean tree Prunus azorica (Rosaceae)

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Cryptic species unveiled: the case of the nematode Spauligodon atlanticus

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Effectiveness of a large reserve network in protecting freshwater biodiversity: a test for the Iberian Peninsula

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Post-fire plant diversity and abundance in pine and eucalypt stands in Portugal: Effects of biogeography, topography, forest type and post-fire management

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Evaluating the fitness for use of spatial data sets to promote quality in ecological assessment and monitoring

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Local scale connectivity in the cave-dwelling brooding fish Apogon imberbis

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Landscape context determinants to plant diversity in the permanent meadows of Southern European Alps

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Full genomic analysis of new variant rabbit hemorrhagic disease virus revealed multiple recombination events

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Remote sensing for conservation monitoring: Assessing protected areas, habitat extent, habitat condition, species diversity, and threats

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Using diversity of the chloroplast genome to examine evolutionary history of wheat species

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Chicken domestication: an updated perspective based on mitochondrial genomes

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Optimizing protection efforts for amphibian conservation in Mediterranean landscapes

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Northern richness and cryptic refugia: phylogeography of the Italian smooth newt Lissotriton vulgaris meridionalis

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Population genetics in the conservation of the Azorean shrub Viburnum treleasei Gand.

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The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts

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The Earth Observation Data for Habitat Monitoring (EODHaM) system

Auteurs: Richard Lucas, Palma Blonda, Peter Bunting, Gwawr Jones, Jordi Inglada, Marcela Arias, Vasiliki Kosmidou, Zisis I. Petrou, Ioannis Manakos, Maria Adamo, Rebecca Charnock, Cristina Tarantino, Caspar A. Mücher, Rob H.G. Jongman, Henk Kramer, Damien Arvor, Joāo Pradinho Honrado, Paola Mairota
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DNA identification of primate bushmeat from urban markets in Guinea-Bissau and its implications for conservation

Auteurs: Tânia Minhós, Emily Wallace, Maria J. Ferreira da Silva, Rui M. Sá, Marta Carmo, André Barata, Michael W. Bruford
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Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species

Auteurs: Klaus-Peter Koepfli, John Pollinger, Raquel Godinho, Jacqueline Robinson, Amanda Lea, Sarah Hendricks, Rena M. Schweizer, Olaf Thalmann, Pedro Silva, Zhenxin Fan, Andrey A. Yurchenko, Pavel Dobrynin, Alexey Makunin, James A. Cahill, Beth Shapiro, Francisco Álvares, José C. Brito, Eli Geffen, Jennifer A. Leonard, Kristofer M. Helgen, Warren E. Johnson, Stephen J. O’Brien, Blaire Van Valkenburgh, Robert K. Wayne
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Using species spectra to evaluate plant community conservation value along a gradient of anthropogenic disturbance

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Identification of Cichlid Fishes from Lake Malawi Using Computer Vision

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Reconciling nature conservation and traditional farming practices: a spatially explicit framework to assess the extent of High Nature Value farmlands in the European countryside

Auteurs: Angela Lomba, Paulo Alves, Rob H. G. Jongman, David I. McCracken
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Surveillance of habitats and plant diversity indicators across a regional gradient in the Iberian Peninsula

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Best management practices to face degraded territories occupied by Cistus ladanifer shrublands – Portugal case study

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Molecular Detection of Hemolivia (Apicomplexa: Haemogregarinidae) from Ticks of North African Testudo graeca (Testudines: Testudinidae) and an Estimation of Their Phylogenetic Relationships Using 18S rRNA Sequences

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Conservation implications of omitting narrow-ranging taxa from species distribution models, now and in the future

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Water cisterns as death traps for amphibians and reptiles in arid environments

Auteurs: LUÍS GARCÍA-CARDENETE, JUAN M. PLEGUEZUELOS, JOSÉ C. BRITO, FRANCISCO JIMÉNEZ-CAZALLA, MARÍA T. PÉREZ-GARCÍA, XAVIER SANTOS
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Climate change is predicted to negatively influence Moroccan endemic reptile richness. Implications for conservation in protected areas

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Prevalence and Diversity of Hepatozoon in Native and Exotic Geckos from Brazil

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Multiplexed-shotgun-genotyping data resolve phylogeny within a very recently derived insular lineage

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Species–area relationships as a tool for the conservation of benthic invertebrates in Italian coastal lagoons

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Community composition and activity of insectivorous bats in Mediterranean olive farms

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The little-known Fraser’s dolpin Lagenodelphis hosei in the North Atlantic: new records and a review of distribution

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Representing taxonomic, phylogenetic and functional diversity: new challenges for Mediterranean marine-protected areas

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High levels of mitochondrial DNA diversity within oxychilid land snails (subgenus Drouetia Gude, 1911) from Sao Miguel island, Azores

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Are protected areas truly protected? The impact of road traffic on vertebrate fauna

Auteurs: Núria Garriga, Xavier Santos, Albert Montori, Alex Richter-Boix, Marc Franch, Gustavo A. Llorente
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Diatom assemblages and their associated environmental drivers in isolated oceanic island streams (Azores archipelago as case study)

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Toward a genome-wide approach for detecting hybrids: informative SNPs to detect introgression between domestic cats and European wildcats (Felis silvestris)

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Pathogen typing in the genomics era: MLST and the future of molecular epidemiology

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An open-source spatio-dynamic wetland model of plant community responses to hydrological pressures

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Sampling effects on the identification of roadkill hotspots: Implications for survey design

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The impact of changing wildfire regimes on wood availability from Portuguese forests

Auteurs: Francisco Rego, Graça Louro, Luís Constantino
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Using species distribution modelling to predict bat fatality risk at wind farms

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Evolutionary patterns of the mitochondrial genome in the Moorish gecko, Tarentola mauritanica

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Not the time or the place: the missing spatio-temporal link in publicly available genetic data

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The impact of management practices and past demographic history on the genetic diversity of red deer ( Cervus elaphus ): an assessment of population and individual fitness

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Leaf litter decomposition in remote oceanic islands: The role of macroinvertebrates vs. microbial decomposition of native vs. exotic plant species

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Molecular phylogenetics in 2D: ITS2 rRNA evolution and sequence-structure barcode from Veneridae to Bivalvia

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Life on a tropical planet: niche conservatism and the global diversity gradient

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Influences of ecology and biogeography on shaping the distributions of cryptic species: three bat tales in Iberia

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The shaping of genetic variation in edge-of-range populations under past and future climate change

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Modelling farming system dynamics in High Nature Value Farmland under policy change

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Genetic diversity of donkey populations from the putative centers of domestication

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Nest site habitat selection and nesting performance of the Great Bustard Otis tarda in southern Portugal: implications for conservation

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Mixed Effects of Long-Term Conservation Investment in Natura 2000 Farmland

Auteurs: Joana Santana, Luís Reino, Chris Stoate, Rui Borralho, Carlos Rio Carvalho, Stefan Schindler, Francisco Moreira, Miguel N. Bugalho, Paulo Flores Ribeiro, José Lima Santos, Alexandre Vaz, Rui Morgado, Miguel Porto, Pedro Beja
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Plant diversity in hiking trails crossing Natura 2000 areas in the Azores: implications for tourism and nature conservation

Auteurs: R. E. Queiroz, M. A. Ventura, L. Silva
Publié dans: Biodiversity and Conservation, Numéro 09603115, 2014, Page(s) 1347-1365, ISSN 0960-3115
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10531-014-0669-7

Optimization of Landscape Services under Uncoordinated Management by Multiple Landowners

Auteurs: Miguel Porto, Otília Correia, Pedro Beja
Publié dans: PLoS ONE, Numéro 19326203, 2014, Page(s) e86001, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0086001

Does local habitat fragmentation affect large-scale distributions? The case of a specialist grassland bird

Auteurs: Luís Reino, Pedro Beja, Miguel B. Araújo, Stéphane Dray, Pedro Segurado
Publié dans: Diversity and Distributions, Numéro 13669516, 2013, Page(s) 423-432, ISSN 1366-9516
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/ddi.12019

Documenting Biogeographical Patterns of African Timber Species Using Herbarium Records: A Conservation Perspective Based on Native Trees from Angola

Auteurs: Maria M. Romeiras, Rui Figueira, Maria Cristina Duarte, Pedro Beja, Iain Darbyshire
Publié dans: PLoS ONE, Numéro 19326203, 2014, Page(s) e103403, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0103403

Genomics and the challenging translation into conservation practice

Auteurs: Aaron B.A. Shafer, Jochen B.W. Wolf, Paulo C. Alves, Linnea Bergström, Michael W. Bruford, Ioana Brännström, Guy Colling, Love Dalén, Luc De Meester, Robert Ekblom, Katie D. Fawcett, Simone Fior, Mehrdad Hajibabaei, Jason A. Hill, A. Rus Hoezel, Jacob Höglund, Evelyn L. Jensen, Johannes Krause, Torsten N. Kristensen, Michael Krützen, John K. McKay, Anita J. Norman, Rob Ogden, E. Martin Österling, N. Joop Ouborg, John Piccolo, Danijela Popović, Craig R. Primmer, Floyd A. Reed, Marie Roumet, Jordi Salmona, Tamara Schenekar, Michael K. Schwartz, Gernot Segelbacher, Helen Senn, Jens Thaulow, Mia Valtonen, Andrew Veale, Philippine Vergeer, Nagarjun Vijay, Carles Vilà, Matthias Weissensteiner, Lovisa Wennerström, Christopher W. Wheat, Piotr Zieliński
Publié dans: Trends in Ecology & Evolution, Numéro 01695347, 2015, Page(s) 78-87, ISSN 0169-5347
Éditeur: Elsevier BV
DOI: 10.1016/j.tree.2014.11.009

Making decisions to conserve species under climate change

Auteurs: Luke P. Shoo, Ary A. Hoffmann, Stephen Garnett, Robert L. Pressey, Yvette M. Williams, Martin Taylor, Lorena Falconi, Colin J. Yates, John K. Scott, Diogo Alagador, Stephen E. Williams
Publié dans: Climatic Change, Numéro 01650009, 2013, Page(s) 239-246, ISSN 0165-0009
Éditeur: Reidel Pub. Co.
DOI: 10.1007/s10584-013-0699-2

Genetic identification of endangered North African ungulates using noninvasive sampling

Auteurs: Teresa Luísa Silva, Raquel Godinho, Diana Castro, Teresa Abáigar, José Carlos Brito, Paulo Célio Alves
Publié dans: Molecular Ecology Resources, Numéro 1755098X, 2015, Page(s) 652-661, ISSN 1755-098X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.12335

Taxonomic and functional response of a Mediterranean reptile assemblage to a repeated fire regime

Auteurs: Xavier Santos, Marc Cheylan
Publié dans: Biological Conservation, Numéro 00063207, 2013, Page(s) 90-98, ISSN 0006-3207
Éditeur: Elsevier BV
DOI: 10.1016/j.biocon.2013.09.008

Conservation of Portuguese red-listed bryophytes species in Portugal: Promoting a shift in perspective on climate changes

Auteurs: C. Sérgio, C. A. Garcia, C. Vieira, H. Hespanhol, M. Sim-Sim, S. Stow, R. Figueira
Publié dans: Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology, Numéro 11263504, 2013, Page(s) 837-850, ISSN 1126-3504
Éditeur: Societa Botanica Italiana
DOI: 10.1080/11263504.2014.949329

Understanding complex biogeographic responses to climate change

Auteurs: Rui Seabra, David S. Wethey, António M. Santos, Fernando P. Lima
Publié dans: Scientific Reports, Numéro 20452322, 2015, Page(s) 12930, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/srep12930

Coccidiosis in European rabbit (Oryctolagus cuniculus algirus) populations in the Iberian Peninsula

Auteurs: Sofia Marques Silva, Catarina Ferreira, Joana Paupério, Rodolfo Miguel Silva, Paulo Célio Alves, Armando Lemos
Publié dans: Acta Parasitologica, Numéro 12302821, 2015, ISSN 1230-2821
Éditeur: Polska Akademia Nauk
DOI: 10.1515/ap-2015-0049

Splitting or Lumping? A Conservation Dilemma Exemplified by the Critically Endangered Dama Gazelle (Nanger dama)

Auteurs: Helen Senn, Lisa Banfield, Tim Wacher, John Newby, Thomas Rabeil, Jennifer Kaden, Andrew C. Kitchener, Teresa Abaigar, Teresa Luísa Silva, Mike Maunder, Rob Ogden
Publié dans: PLoS ONE, Numéro 19326203, 2014, Page(s) e98693, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0098693

Diversity of cloacal microbial community in migratory shorebirds that use the Tagus estuary as stopover habitat and their potential to harbor and disperse pathogenic microorganisms

Auteurs: Susana S. Santos, Sara Pardal, Diogo N. Proença, Ricardo J. Lopes, Jaime A. Ramos, Luísa Mendes, Paula V. Morais
Publié dans: FEMS Microbiology Ecology, Numéro 01686496, 2012, Page(s) 63-74, ISSN 0168-6496
Éditeur: Blackwell
DOI: 10.1111/j.1574-6941.2012.01407.x

A spatially explicit approach to assess the collision risk between birds and overhead power lines: A case study with the little bustard

Auteurs: João Paulo Silva, Jorge Manuel Palmeirim, Rita Alcazar, Ricardo Correia, Ana Delgado, Francisco Moreira
Publié dans: Biological Conservation, Numéro 00063207, 2014, Page(s) 256-263, ISSN 0006-3207
Éditeur: Elsevier BV
DOI: 10.1016/j.biocon.2013.12.026

Divide to conquer: a complex pattern of biodiversity depicted by vertebrate components in the Brazilian Atlantic Forest

Auteurs: SOFIA MARQUES SILVA, NADIA MORAES-BARROS, CAMILA C. RIBAS, NUNO FERRAND, JOÃO S. MORGANTE
Publié dans: Biological Journal of the Linnean Society, Numéro 00244066, 2012, Page(s) 39-55, ISSN 0024-4066
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/j.1095-8312.2012.01919.x

New nuclear primers for molecular studies of Epinephelidae fishes

Auteurs: G. C. Silva-Oliveira, A. B. C. Silva, Y. Oliveira, Z. P. Nunes, R. A. Torres, I. Sampaio, M. Vallinoto
Publié dans: Conservation Genetics Resources, Numéro 18777252, 2013, Page(s) 165-168, ISSN 1877-7252
Éditeur: Springer Verlag
DOI: 10.1007/s12686-012-9759-6

Patterns of genetic diversity in Hepatozoon spp. infecting snakes from North Africa and the Mediterranean Basin

Auteurs: Beatriz Tomé, João P. Maia, Daniele Salvi, José C. Brito, Miguel A. Carretero, Ana Perera, Harald Meimberg, David James Harris
Publié dans: Systematic Parasitology, Numéro 01655752, 2014, Page(s) 249-258, ISSN 0165-5752
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s11230-014-9477-4

Hepatozoon Infection Prevalence in Four Snake Genera: Influence of Diet, Prey Parasitemia Levels, or Parasite Type?

Auteurs: Beatriz Tomé, João P. M. C. Maia, D. James Harris
Publié dans: Journal of Parasitology, Numéro 00223395, 2012, Page(s) 913-917, ISSN 0022-3395
Éditeur: American Society of Parasitology
DOI: 10.1645/GE-3111.1

Assessing the impact of reforestation on the diversity of Mediterranean terrestrial Gastropoda

Auteurs: Ignasi Torre, Vicenç Bros, Xavier Santos
Publié dans: Biodiversity and Conservation, Numéro 09603115, 2014, Page(s) 2579-2589, ISSN 0960-3115
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10531-014-0740-4

Landscape of amphibian diversity in Latium Region: peaks, valleys and gaps of conservation priority

Auteurs: L. Vignoli, P. Bombi, M. A. Bologna, D. Capizzi, D. Salvi
Publié dans: Italian Journal of Zoology, Numéro 11250003, 2013, Page(s) 586-595, ISSN 1125-0003
Éditeur: Mucchi Editore
DOI: 10.1080/11250003.2013.826741

New alien barnacles in the Azores and some remarks on the invasive potential of Balanidae

Auteurs: Paulo Torres, Ana Cristina Costa, Maria Ana Dionísio
Publié dans: Helgoland Marine Research, Numéro 1438387X, 2012, Page(s) 513-522, ISSN 1438-387X
Éditeur: Springer Verlag
DOI: 10.1007/s10152-011-0287-7

An integrative taxonomic revision of the Tarentola geckos (Squamata, Phyllodactylidae) of the Cape Verde Islands

Auteurs: RAQUEL VASCONCELOS, ANA PERERA, PHILIPPE GENIEZ, D. JAMES HARRIS, SALVADOR CARRANZA
Publié dans: Zoological Journal of the Linnean Society, Numéro 00244082, 2012, Page(s) 328-360, ISSN 0024-4082
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/j.1096-3642.2011.00768.x

Applying species distribution modelling to the conservation of an ecologically plastic species (Papio papio) across biogeographic regions in West Africa

Auteurs: Cândida G. Vale, Maria J. Ferreira da Silva, João C. Campos, João Torres, José C. Brito
Publié dans: Journal for Nature Conservation, Numéro 16171381, 2015, Page(s) 26-36, ISSN 1617-1381
Éditeur: Elsevier BV
DOI: 10.1016/j.jnc.2015.06.004

Genetic Divergence for the Amphibian Pleurodeles waltl in Southwest Portugal: Dispersal Barriers Shaping Geographic Patterns

Auteurs: Mirjam S. van de Vliet, Onno E. Diekmann, Margarida Machado, Trevor J. C. Beebee, Pedro Beja, Ester A. Serrão
Publié dans: Journal of Herpetology, Numéro 00221511, 2014, Page(s) 38-44, ISSN 0022-1511
Éditeur: Society for the Study of Amphibians and Reptiles
DOI: 10.1670/12-181

First estimates of genetic diversity for the highly endangered giant sable antelope using a set of 57 microsatellites

Auteurs: Pedro Vaz Pinto, Susana Lopes, Sofia Mourão, Sendi Baptista, Hans R. Siegismund, Bettine Jansen van Vuuren, Pedro Beja, Nuno Ferrand, Raquel Godinho
Publié dans: European Journal of Wildlife Research, Numéro 16124642, 2015, Page(s) 313-317, ISSN 1612-4642
Éditeur: Springer Verlag
DOI: 10.1007/s10344-014-0880-6

DNA barcoding assessment of genetic variation in two widespread skinks from Madagascar, Trachylepis elegans and T. gravenhorstii (Squamata: Scincidae)

Auteurs: Miguel Vences, Alexandra Lima, Aurélien Miralles, Frank Glaw
Publié dans: Zootaxa, Numéro 11755326, 2014, Page(s) 477, ISSN 1175-5326
Éditeur: Magnolia Press
DOI: 10.11646/zootaxa.3755.5.7

Risk assessment for Iberian birds under global change

Auteurs: Maria Triviño, Mar Cabeza, Wilfried Thuiller, Thomas Hickler, Miguel B. Araújo
Publié dans: Biological Conservation, Numéro 00063207, 2013, Page(s) 192-200, ISSN 0006-3207
Éditeur: Elsevier BV
DOI: 10.1016/j.biocon.2013.10.005

Cryptic patterns of diversification of a widespread Amazonian Woodcreeper species complex (Aves: Dendrocolaptidae) inferred from multilocus phylogenetic analysis: Implications for historical biogeography and taxonomy

Auteurs: Tiago Sousa-Neves, Alexandre Aleixo, Fernando Sequeira
Publié dans: Molecular Phylogenetics and Evolution, Numéro 10557903, 2013, Page(s) 410-424, ISSN 1055-7903
Éditeur: Academic Press
DOI: 10.1016/j.ympev.2013.04.018

Species diversity of the deep-water gulper sharks (Squaliformes: Centrophoridae: Centrophorus ) in North Atlantic waters - current status and taxonomic issues

Auteurs: Ana Veríssimo, Charles F. Cotton, Robert H. Buch, Javier Guallart, George H. Burgess
Publié dans: Zoological Journal of the Linnean Society, Numéro 00244082, 2014, Page(s) 803-830, ISSN 0024-4082
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/zoj.12194

Identifying priority areas for island endemics using genetic versus specific diversity – The case of terrestrial reptiles of the Cape Verde Islands

Auteurs: Raquel Vasconcelos, José Carlos Brito, Sílvia B. Carvalho, Salvador Carranza, D. James Harris
Publié dans: Biological Conservation, Numéro 00063207, 2012, Page(s) 276-286, ISSN 0006-3207
Éditeur: Elsevier BV
DOI: 10.1016/j.biocon.2012.04.020

Review of the distribution and conservation status of the terrestrial reptiles of the Cape Verde Islands

Auteurs: Raquel Vasconcelos, José Carlos Brito, Salvador Carranza, D. James Harris
Publié dans: Oryx, Numéro 00306053, 2013, Page(s) 77-87, ISSN 0030-6053
Éditeur: Cambridge University Press
DOI: 10.1017/S0030605311001438

The concept of the Portuguese National Ecological Reserve: constraints and impossibilities in the Azores Archipelago

Auteurs: Marta Horta de Sousa Vergílio, Helena Maria Gregório Pina Calado
Publié dans: Journal of Environmental Planning and Management, Numéro 09640568, 2014, Page(s) 1015-1033, ISSN 0964-0568
Éditeur: Carfax Publishing Ltd.
DOI: 10.1080/09640568.2014.907134

Molecular Assessment of Apicomplexan Parasites in the Snake Psammophis from North Africa: Do Multiple Parasite Lineages Reflect the Final Vertebrate Host Diet?

Auteurs: Beatriz Tomé, João P. M. C. Maia, D. James Harris
Publié dans: Journal of Parasitology, Numéro 00223395, 2013, Page(s) 883-887, ISSN 0022-3395
Éditeur: American Society of Parasitology
DOI: 10.1645/12-95.1

Can we predict habitat quality from space? A multi-indicator assessment based on an automated knowledge-driven system

Auteurs: Ana Sofia Vaz, Bruno Marcos, João Gonçalves, António Monteiro, Paulo Alves, Emilio Civantos, Richard Lucas, Paola Mairota, Javier Garcia-Robles, Joaquim Alonso, Palma Blonda, Angela Lomba, João Pradinho Honrado
Publié dans: International Journal of Applied Earth Observation and Geoinformation, Numéro 03032434, 2015, Page(s) 106-113, ISSN 0303-2434
Éditeur: International Institute for Aerial Survey and Earth Sciences
DOI: 10.1016/j.jag.2014.10.014

New Records of Insect Pest Species Associated with Cashew, Anacardium occidentale L. (Anacardiaceae), in Guinea-Bissau

Auteurs: S. Vasconcelos, L.F. Mendes, P. Beja, C.J. Hodgson, L. Catarino
Publié dans: African Entomology, Numéro 10213589, 2014, Page(s) 673-677, ISSN 1021-3589
Éditeur: Entomological Society of Southern Africa/Entologiese Vereniging van Suidelike Afrika
DOI: 10.4001/003.022.0324

Trophic ecology and bioindicator potential of the North Atlantic tope shark

Auteurs: Paulo Torres, Regina Tristão da Cunha, Rodrigo Maia, Armindo dos Santos Rodrigues
Publié dans: Science of The Total Environment, Numéro 00489697, 2014, Page(s) 574-581, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2014.02.091

Challenges for assessing vertebrate diversity in turbid Saharan water-bodies using environmental DNA

Auteurs: Bastian Egeter, Sara Peixoto, José C. Brito, Simon Jarman, Pamela Puppo, Guillermo Velo-Antón
Publié dans: Genome, Numéro 61/11, 2018, Page(s) 807-814, ISSN 0831-2796
Éditeur: NRC Research Press
DOI: 10.1139/gen-2018-0071

Mondeguina, a new genus for Apatetris mediterranella Nel & Varenne, 2012, with description of a new species from Portugal (Lepidoptera, Gelechiidae)

Auteurs: Martin F. V. Corley, Jorge Rosete, Sónia Ferreira
Publié dans: Nota Lepidopterologica, Numéro 43, 2020, Page(s) 151-166, ISSN 0342-7536
Éditeur: Apollo Books
DOI: 10.3897/nl.43.50430

Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists

Auteurs: Luís P. Silva, Vanessa A. Mata, Pedro B. Lopes, Paulo Pereira, Simon N. Jarman, Ricardo J. Lopes, Pedro Beja
Publié dans: Molecular Ecology Resources, Numéro 19/6, 2019, Page(s) 1420-1432, ISSN 1755-098X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.13060

Using molecular diet analysis to inform invasive species management: A case study of introduced rats consuming endemic New Zealand frogs

Auteurs: Bastian Egeter, Cailín Roe, Sara Peixoto, Pamela Puppo, Luke J. Easton, Joana Pinto, Phillip J. Bishop, Bruce C. Robertson
Publié dans: Ecology and Evolution, Numéro 9/9, 2019, Page(s) 5032-5048, ISSN 2045-7758
Éditeur: John Wiley and Sons Ltd
DOI: 10.1002/ece3.4903

Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats

Auteurs: MARTIN CORLEY, SÓNIA FERREIRA, VANESSA A. MATA
Publié dans: Zootaxa, Numéro 4609/3, 2019, Page(s) 565, ISSN 1175-5326
Éditeur: Magnolia Press
DOI: 10.11646/zootaxa.4609.3.10

Wesmaelius (Kimninsia) nervosus (Fabricius, 1793) (Neuroptera, Hemerobiidae) a new species of brown lacewing for the Portuguese fauna

Auteurs: Daniel Oliveira and Sónia Ferreira
Publié dans: Asociación española de Entomología, 2020, ISSN 0210-8984
Éditeur: Universitat de Valencia

Depressaria infernella Corley & Buchner, a new Iberian species of the Depressaria douglasella group (Lepidoptera: Depressariidae)

Auteurs: MFV Corley, P Buchner and S Ferreira
Publié dans: SHILAP, 2019, ISSN 0300-5267
Éditeur: Sociedad Hispano-Luso-Americana de Lepidopterologia

Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring

Auteurs: Filipa M. S. Martins, Mafalda Galhardo, Ana F. Filipe, Amílcar Teixeira, Paulo Pinheiro, Joana Paupério, Paulo C. Alves, Pedro Beja
Publié dans: Molecular Ecology Resources, Numéro 19/4, 2019, Page(s) 863-876, ISSN 1755-098X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.13012

Conservation and Genetics of Populations

Auteurs: Allendorf FW, Luikart G, Aitken S
Publié dans: 2012, ISBN 978-0-470-67145-0
Éditeur: Wiley-Blackwell

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