Recombination in large genome crop plants

Publications

Peer reviewed articles (14)

Cytology and Microscopy: Immunolocalization of Covalently Modified Histone Marks on Barley Mitotic Chromosomes

Author(s): Isabelle Colas, Katie Baker, Andrew Flavell
Published in: BIO-PROTOCOL, Issue 6/12, 2016, ISSN 2331-8325
DOI: 10.21769/BioProtoc.1841

An Overview of CRISPR-Based Tools and Their Improvements: New Opportunities in Understanding Plant–Pathogen Interactions for Better Crop Protection

Author(s): Abdellah Barakate, Jennifer Stephens
Published in: Frontiers in Plant Science, Issue 7, 2016, Page(s) 765, ISSN 1664-462X
DOI: 10.3389/fpls.2016.00765

Observation of Extensive Chromosome Axis Remodeling during the “Diffuse-Phase” of Meiosis in Large Genome Cereals

Author(s): Isabelle Colas, Benoit Darrier, Mikel Arrieta, Sybille U. Mittmann, Luke Ramsay, Pierre Sourdille, Robbie Waugh
Published in: Frontiers in Plant Science, Issue 8, 2017, ISSN 1664-462X
DOI: 10.3389/fpls.2017.01235

Corrigendum

Author(s): Colas I, Macaulay M, Higgins JD, Phillips D, Barakate A, Posch M, Armstrong SJ, Franklin FC, Halpin C, Waugh R, Ramsay L
Published in: New Phytologist, Issue 220/1, 2018, Page(s) 348-348, ISSN 0028-646X
DOI: 10.1111/nph.15402

A spontaneous mutation in MutL-Homolog 3 (HvMLH3) affects synapsis and crossover resolution in the barley desynaptic mutant des10

Author(s): Isabelle Colas, Malcolm Macaulay, James D. Higgins, Dylan Phillips, Abdellah Barakate, Markus Posch, Susan J. Armstrong, F. Chris H. Franklin, Claire Halpin, Robbie Waugh, Luke Ramsay
Published in: New Phytologist, Issue 212/3, 2016, Page(s) 693-707, ISSN 0028-646X
DOI: 10.1111/nph.14061

Chromatin dynamics during interphase and cell division: similarities and differences between model and crop plants

Author(s): Ales Pecinka, Christian Chevalier, Isabelle Colas, Kriton Kalantidis, Serena Varotto, Tamar Krugman, Christos Michailidis, María-Pilar Vallés, Aitor Muñoz, Mónica Pradillo
Published in: Journal of Experimental Botany, 2019, ISSN 0022-0957
DOI: 10.1093/jxb/erz457

BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

Author(s): Paulo Rapazote-Flores, Micha Bayer, Linda Milne, Claus-Dieter Mayer, John Fuller, Wenbin Guo, Pete E. Hedley, Jenny Morris, Claire Halpin, Jason Kam, Sarah M. McKim, Monika Zwirek, M. Cristina Casao, Abdellah Barakate, Miriam Schreiber, Gordon Stephen, Runxuan Zhang, John W. S. Brown, Robbie Waugh, Craig G. Simpson
Published in: BMC Genomics, Issue 20/1, 2019, ISSN 1471-2164
DOI: 10.1186/s12864-019-6243-7

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae

Author(s): Volodymyr Radchuk, Rajiv Sharma, Elena Potokina, Ruslana Radchuk, Diana Weier, Eberhard Munz, Miriam Schreiber, Martin Mascher, Nils Stein, Thomas Wicker, Benjamin Kilian, Ljudmilla Borisjuk
Published in: The Plant Journal, 2019, ISSN 0960-7412
DOI: 10.1111/tpj.14363

desynaptic5 carries a spontaneous semi-dominant mutation affecting Disrupted Meiotic cDNA 1 in barley

Author(s): Isabelle Colas, Abdellah Barakate, Malcolm Macaulay, Miriam Schreiber, Jennifer Stephens, Sebastian Vivera, Claire Halpin, Robbie Waugh, Luke Ramsay
Published in: Journal of Experimental Botany, Issue 70/10, 2019, Page(s) 2683-2698, ISSN 0022-0957
DOI: 10.1093/jxb/erz080

A Comparison of Mainstream Genotyping Platforms for the Evaluation and Use of Barley Genetic Resources

Author(s): Benoit Darrier, Joanne Russell, Sara G. Milner, Pete E. Hedley, Paul D. Shaw, Malcolm Macaulay, Luke D. Ramsay, Claire Halpin, Martin Mascher, Delphine L. Fleury, Peter Langridge, Nils Stein, Robbie Waugh
Published in: Frontiers in Plant Science, Issue 10, 2019, ISSN 1664-462X
DOI: 10.3389/fpls.2019.00544

Application of a Sensitive and Reproducible Label-Free Proteomic Approach to Explore the Proteome of Individual Meiotic-Phase Barley Anthers

Author(s): Dominika Lewandowska, Runxuan Zhang, Isabelle Colas, Nicola Uzrek, Robbie Waugh
Published in: Frontiers in Plant Science, Issue 10, 2019, ISSN 1664-462X
DOI: 10.3389/fpls.2019.00393

Genome editing of potato using CRISPR technologies: current development and future prospective

Author(s): Sarbesh Das Dangol, Abdellah Barakate, Jennifer Stephens, Mehmet Emin Çalıskan, Allah Bakhsh
Published in: Plant Cell, Tissue and Organ Culture (PCTOC), Issue 139/2, 2019, Page(s) 403-416, ISSN 0167-6857
DOI: 10.1007/s11240-019-01662-y

A highly mutagenised barley (cv. Golden Promise) TILLING population coupled with strategies for screening-by-sequencing

Author(s): Miriam Schreiber, Abdellah Barakate, Nicola Uzrek, Malcolm Macaulay, Adeline Sourdille, Jenny Morris, Pete E. Hedley, Luke Ramsay, Robbie Waugh
Published in: Plant Methods, Issue 15/1, 2019, ISSN 1746-4811
DOI: 10.1186/s13007-019-0486-9

A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise

Author(s): Miriam Schreiber, Martin Mascher, Jonathan Wright, Sudharasan Padmarasu, Axel Himmelbach, Darren Heavens, Linda Milne, Bernardo J. Clavijo, Nils Stein, Robbie Waugh
Published in: "G3: Genes|Genomes|Genetics", 2020, Page(s) g3.401010.2019, ISSN 2160-1836
DOI: 10.1534/g3.119.401010

Book chapters (3)

A Modular Tray Growth System for Barley

Author(s): Mikel Arrieta, Isabelle Colas, Malcolm Macaulay, Robbie Waugh, Luke Ramsay
Published in: Plant Meiosis - Methods and Protocols, Issue 2061, 2020, Page(s) 367-379
DOI: 10.1007/978-1-4939-9818-0_26

Following the Formation of Synaptonemal Complex Formation in Wheat and Barley by High-Resolution Microscopy

Author(s): Benoit Darrier, Mikel Arrieta, Sybille U. Mittmann, Pierre Sourdille, Luke Ramsay, Robbie Waugh, Isabelle Colas
Published in: Plant Meiosis - Methods and Protocols, Issue 2061, 2020, Page(s) 207-215
DOI: 10.1007/978-1-4939-9818-0_15

Preparation of Barley Pollen Mother Cells for Confocal and Super Resolution Microscopy

Author(s): Sybille Mittmann, Mikel Arrieta, Luke Ramsay, Robbie Waugh, Isabelle Colas
Published in: Barley - Methods and Protocols, Issue 1900, 2019, Page(s) 167-179
DOI: 10.1007/978-1-4939-8944-7_11

Non-peer reviewed articles (1)

Time-resolved transcriptome of barley anthers and meiocytes reveals robust and largely stable gene expression changes at meiosis entry

Author(s): Abdellah Barakate, Jamie Orr, Miriam Schreiber, Isabelle Colas, Dominika Lewandowska, Nicola McCallum, Malcolm Macaulay, Jenny Morris, Mikel Arrieta, Pete E. Hedley, Luke Ramsay, Robbie Waugh
Published in: BioRxiv, 2020, ISSN 0362-4331
DOI: 10.1101/2020.04.20.051425