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Recombination in large genome crop plants

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Publications

Barley sodium content is regulated by natural variants of the Na+ transporter HvHKT1;5

Author(s): Kelly Houston, Jiaen Qiu, Stefanie Wege, Maria Hrmova, Helena Oakey, Yue Qu, Pauline Smith, Apriadi Situmorang, Malcolm Macaulay, Paulina Flis, Micha Bayer, Stuart Roy, Claire Halpin, Joanne Russell, Miriam Schreiber, Caitlin Byrt, Matt Gilliham, David E. Salt, Robbie Waugh
Published in: Communications Biology, 3/1, 2020, ISSN 2399-3642
Publisher: Springer Nature
DOI: 10.1038/s42003-020-0990-5

The barley pan-genome reveals the hidden legacy of mutation breeding.

Author(s): Murukarthick Jayakodi, Sudharsan Padmarasu, Georg Haberer, Venkata Suresh Bonthala, Heidrun Gundlach, Cécile Monat, Thomas Lux, Nadia Kamal, Daniel Lang, Axel Himmelbach, Jennifer Ens, Xiao-Qi Zhang, Tefera T. Angessa, Gaofeng Zhou, Cong Tan, Camilla Hill, Penghao Wang, Miriam Schreiber, Lori B. Boston, Christopher PlottJerry Jenkins, Yu Guo, Anne Fiebig, Hikmet Budak, Dongdong Xu, Jing Zhang, Ch
Published in: Nature, 2020, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-020-2947-8

Targeted mutation of barley (1,3;1,4)‐β‐glucan synthases reveals complex relationships between the storage and cell wall polysaccharide content

Author(s): Guillermo Garcia‐Gimenez, Abdellah Barakate, Pauline Smith, Jennifer Stephens, Shi F. Khor, Monika S. Doblin, Pengfei Hao, Antony Bacic, Geoffrey B. Fincher, Rachel A. Burton, Robbie Waugh, Matthew R. Tucker, Kelly Houston
Published in: The Plant Journal, 104/4, 2020, Page(s) 1009-1022, ISSN 0960-7412
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14977

The effect of heat stress on sugar beet recombination

Author(s): Mikel Arrieta, Glenda Willems, Jérôme DePessemier, Isabelle Colas, Alexandra Burkholz, Aude Darracq, Sigrid Vanstraelen, Pieter Pacolet, Camille Barré, Paul Kempeneers, Robbie Waugh, Steve Barnes, Luke Ramsay
Published in: Theoretical and Applied Genetics, 134/1, 2021, Page(s) 81-93, ISSN 0040-5752
Publisher: Springer Verlag
DOI: 10.1007/s00122-020-03683-0

Cytology and Microscopy: Immunolocalization of Covalently Modified Histone Marks on Barley Mitotic Chromosomes

Author(s): Isabelle Colas, Katie Baker, Andrew Flavell
Published in: BIO-PROTOCOL, 6/12, 2016, ISSN 2331-8325
Publisher: Bio-Protocol
DOI: 10.21769/BioProtoc.1841

An Overview of CRISPR-Based Tools and Their Improvements: New Opportunities in Understanding Plant–Pathogen Interactions for Better Crop Protection

Author(s): Abdellah Barakate, Jennifer Stephens
Published in: Frontiers in Plant Science, 7, 2016, Page(s) 765, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2016.00765

Observation of Extensive Chromosome Axis Remodeling during the “Diffuse-Phase” of Meiosis in Large Genome Cereals

Author(s): Isabelle Colas, Benoit Darrier, Mikel Arrieta, Sybille U. Mittmann, Luke Ramsay, Pierre Sourdille, Robbie Waugh
Published in: Frontiers in Plant Science, 8, 2017, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2017.01235

Corrigendum

Author(s): Colas I, Macaulay M, Higgins JD, Phillips D, Barakate A, Posch M, Armstrong SJ, Franklin FC, Halpin C, Waugh R, Ramsay L
Published in: New Phytologist, 220/1, 2018, Page(s) 348-348, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.15402

A spontaneous mutation in MutL-Homolog 3 (HvMLH3) affects synapsis and crossover resolution in the barley desynaptic mutant des10

Author(s): Isabelle Colas, Malcolm Macaulay, James D. Higgins, Dylan Phillips, Abdellah Barakate, Markus Posch, Susan J. Armstrong, F. Chris H. Franklin, Claire Halpin, Robbie Waugh, Luke Ramsay
Published in: New Phytologist, 212/3, 2016, Page(s) 693-707, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.14061

Chromatin dynamics during interphase and cell division: similarities and differences between model and crop plants

Author(s): Ales Pecinka, Christian Chevalier, Isabelle Colas, Kriton Kalantidis, Serena Varotto, Tamar Krugman, Christos Michailidis, María-Pilar Vallés, Aitor Muñoz, Mónica Pradillo
Published in: Journal of Experimental Botany, 2019, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erz457

BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

Author(s): Paulo Rapazote-Flores, Micha Bayer, Linda Milne, Claus-Dieter Mayer, John Fuller, Wenbin Guo, Pete E. Hedley, Jenny Morris, Claire Halpin, Jason Kam, Sarah M. McKim, Monika Zwirek, M. Cristina Casao, Abdellah Barakate, Miriam Schreiber, Gordon Stephen, Runxuan Zhang, John W. S. Brown, Robbie Waugh, Craig G. Simpson
Published in: BMC Genomics, 20/1, 2019, ISSN 1471-2164
Publisher: BioMed Central
DOI: 10.1186/s12864-019-6243-7

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae

Author(s): Volodymyr Radchuk, Rajiv Sharma, Elena Potokina, Ruslana Radchuk, Diana Weier, Eberhard Munz, Miriam Schreiber, Martin Mascher, Nils Stein, Thomas Wicker, Benjamin Kilian, Ljudmilla Borisjuk
Published in: The Plant Journal, 2019, ISSN 0960-7412
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14363

desynaptic5 carries a spontaneous semi-dominant mutation affecting Disrupted Meiotic cDNA 1 in barley

Author(s): Isabelle Colas, Abdellah Barakate, Malcolm Macaulay, Miriam Schreiber, Jennifer Stephens, Sebastian Vivera, Claire Halpin, Robbie Waugh, Luke Ramsay
Published in: Journal of Experimental Botany, 70/10, 2019, Page(s) 2683-2698, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erz080

A Comparison of Mainstream Genotyping Platforms for the Evaluation and Use of Barley Genetic Resources

Author(s): Benoit Darrier, Joanne Russell, Sara G. Milner, Pete E. Hedley, Paul D. Shaw, Malcolm Macaulay, Luke D. Ramsay, Claire Halpin, Martin Mascher, Delphine L. Fleury, Peter Langridge, Nils Stein, Robbie Waugh
Published in: Frontiers in Plant Science, 10, 2019, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.00544

Application of a Sensitive and Reproducible Label-Free Proteomic Approach to Explore the Proteome of Individual Meiotic-Phase Barley Anthers

Author(s): Dominika Lewandowska, Runxuan Zhang, Isabelle Colas, Nicola Uzrek, Robbie Waugh
Published in: Frontiers in Plant Science, 10, 2019, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.00393

Genome editing of potato using CRISPR technologies: current development and future prospective

Author(s): Sarbesh Das Dangol, Abdellah Barakate, Jennifer Stephens, Mehmet Emin Çalıskan, Allah Bakhsh
Published in: Plant Cell, Tissue and Organ Culture (PCTOC), 139/2, 2019, Page(s) 403-416, ISSN 0167-6857
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11240-019-01662-y

A highly mutagenised barley (cv. Golden Promise) TILLING population coupled with strategies for screening-by-sequencing

Author(s): Miriam Schreiber, Abdellah Barakate, Nicola Uzrek, Malcolm Macaulay, Adeline Sourdille, Jenny Morris, Pete E. Hedley, Luke Ramsay, Robbie Waugh
Published in: Plant Methods, 15/1, 2019, ISSN 1746-4811
Publisher: BioMed Central
DOI: 10.1186/s13007-019-0486-9

A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise

Author(s): Miriam Schreiber, Martin Mascher, Jonathan Wright, Sudharasan Padmarasu, Axel Himmelbach, Darren Heavens, Linda Milne, Bernardo J. Clavijo, Nils Stein, Robbie Waugh
Published in: "G3: Genes|Genomes|Genetics", 2020, Page(s) g3.401010.2019, ISSN 2160-1836
Publisher: Genetics Society of America
DOI: 10.1534/g3.119.401010

APETALA2 functions as a temporal factor together with BLADE-ON-PETIOLE2 and MADS29 to control flower and grain development in barley

Author(s): Jennifer R. Shoesmith, Charles Ugochukwu Solomon, Xiujuan Yang, Laura G. Wilkinson, Scott Sheldrick, Ewan van Eijden, Sanne Couwenberg, Laura M. Pugh, Mhmoud Eskan, Jennifer Stephens, Abdellah Barakate, Sinéad Drea, Kelly Houston, Matthew R. Tucker, Sarah M. McKim
Published in: Development, 2019, Page(s) dev.194894, ISSN 0950-1991
Publisher: The Company of Biologists Ltd.
DOI: 10.1242/dev.194894

A Modular Tray Growth System for Barley

Author(s): Mikel Arrieta, Isabelle Colas, Malcolm Macaulay, Robbie Waugh, Luke Ramsay
Published in: Plant Meiosis - Methods and Protocols, 2061, 2020, Page(s) 367-379, ISBN 978-1-4939-9817-3
Publisher: Springer New York
DOI: 10.1007/978-1-4939-9818-0_26

Following the Formation of Synaptonemal Complex Formation in Wheat and Barley by High-Resolution Microscopy

Author(s): Benoit Darrier, Mikel Arrieta, Sybille U. Mittmann, Pierre Sourdille, Luke Ramsay, Robbie Waugh, Isabelle Colas
Published in: Plant Meiosis - Methods and Protocols, 2061, 2020, Page(s) 207-215, ISBN 978-1-4939-9817-3
Publisher: Springer New York
DOI: 10.1007/978-1-4939-9818-0_15

Preparation of Barley Pollen Mother Cells for Confocal and Super Resolution Microscopy

Author(s): Sybille Mittmann, Mikel Arrieta, Luke Ramsay, Robbie Waugh, Isabelle Colas
Published in: Barley - Methods and Protocols, 1900, 2019, Page(s) 167-179, ISBN 978-1-4939-8942-3
Publisher: Springer New York
DOI: 10.1007/978-1-4939-8944-7_11

Time-resolved transcriptome of barley anthers and meiocytes reveals robust and largely stable gene expression changes at meiosis entry

Author(s): Abdellah Barakate, Jamie Orr, Miriam Schreiber, Isabelle Colas, Dominika Lewandowska, Nicola McCallum, Malcolm Macaulay, Jenny Morris, Mikel Arrieta, Pete E. Hedley, Luke Ramsay, Robbie Waugh
Published in: BioRxiv, 2020, ISSN 0362-4331
Publisher: New York Times Company
DOI: 10.1101/2020.04.20.051425