Recombination in large genome crop plants

Barley sodium content is regulated by natural variants of the Na+ transporter HvHKT1;5

Autorzy: Kelly Houston, Jiaen Qiu, Stefanie Wege, Maria Hrmova, Helena Oakey, Yue Qu, Pauline Smith, Apriadi Situmorang, Malcolm Macaulay, Paulina Flis, Micha Bayer, Stuart Roy, Claire Halpin, Joanne Russell, Miriam Schreiber, Caitlin Byrt, Matt Gilliham, David E. Salt, Robbie Waugh
Opublikowane w: Communications Biology, Numer 3/1, 2020, ISSN 2399-3642
Wydawca: Springer Nature
DOI: 10.1038/s42003-020-0990-5

The barley pan-genome reveals the hidden legacy of mutation breeding.

Autorzy: Murukarthick Jayakodi, Sudharsan Padmarasu, Georg Haberer, Venkata Suresh Bonthala, Heidrun Gundlach, Cécile Monat, Thomas Lux, Nadia Kamal, Daniel Lang, Axel Himmelbach, Jennifer Ens, Xiao-Qi Zhang, Tefera T. Angessa, Gaofeng Zhou, Cong Tan, Camilla Hill, Penghao Wang, Miriam Schreiber, Lori B. Boston, Christopher PlottJerry Jenkins, Yu Guo, Anne Fiebig, Hikmet Budak, Dongdong Xu, Jing Zhang, Ch
Opublikowane w: Nature, 2020, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/s41586-020-2947-8

Targeted mutation of barley (1,3;1,4)‐β‐glucan synthases reveals complex relationships between the storage and cell wall polysaccharide content

Autorzy: Guillermo Garcia‐Gimenez, Abdellah Barakate, Pauline Smith, Jennifer Stephens, Shi F. Khor, Monika S. Doblin, Pengfei Hao, Antony Bacic, Geoffrey B. Fincher, Rachel A. Burton, Robbie Waugh, Matthew R. Tucker, Kelly Houston
Opublikowane w: The Plant Journal, Numer 104/4, 2020, Strona(/y) 1009-1022, ISSN 0960-7412
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14977

The effect of heat stress on sugar beet recombination

Autorzy: Mikel Arrieta, Glenda Willems, Jérôme DePessemier, Isabelle Colas, Alexandra Burkholz, Aude Darracq, Sigrid Vanstraelen, Pieter Pacolet, Camille Barré, Paul Kempeneers, Robbie Waugh, Steve Barnes, Luke Ramsay
Opublikowane w: Theoretical and Applied Genetics, Numer 134/1, 2021, Strona(/y) 81-93, ISSN 0040-5752
Wydawca: Springer Verlag
DOI: 10.1007/s00122-020-03683-0

An Overview of CRISPR-Based Tools and Their Improvements: New Opportunities in Understanding Plant–Pathogen Interactions for Better Crop Protection

Autorzy: Abdellah Barakate, Jennifer Stephens
Opublikowane w: Frontiers in Plant Science, Numer 7, 2016, Strona(/y) 765, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2016.00765

Observation of Extensive Chromosome Axis Remodeling during the “Diffuse-Phase” of Meiosis in Large Genome Cereals

Autorzy: Isabelle Colas, Benoit Darrier, Mikel Arrieta, Sybille U. Mittmann, Luke Ramsay, Pierre Sourdille, Robbie Waugh
Opublikowane w: Frontiers in Plant Science, Numer 8, 2017, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2017.01235

Corrigendum

Autorzy: Colas I, Macaulay M, Higgins JD, Phillips D, Barakate A, Posch M, Armstrong SJ, Franklin FC, Halpin C, Waugh R, Ramsay L
Opublikowane w: New Phytologist, Numer 220/1, 2018, Strona(/y) 348-348, ISSN 0028-646X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/nph.15402

A spontaneous mutation in MutL-Homolog 3 (HvMLH3) affects synapsis and crossover resolution in the barley desynaptic mutant des10

Autorzy: Isabelle Colas, Malcolm Macaulay, James D. Higgins, Dylan Phillips, Abdellah Barakate, Markus Posch, Susan J. Armstrong, F. Chris H. Franklin, Claire Halpin, Robbie Waugh, Luke Ramsay
Opublikowane w: New Phytologist, Numer 212/3, 2016, Strona(/y) 693-707, ISSN 0028-646X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/nph.14061

Chromatin dynamics during interphase and cell division: similarities and differences between model and crop plants

Autorzy: Ales Pecinka, Christian Chevalier, Isabelle Colas, Kriton Kalantidis, Serena Varotto, Tamar Krugman, Christos Michailidis, María-Pilar Vallés, Aitor Muñoz, Mónica Pradillo
Opublikowane w: Journal of Experimental Botany, 2019, ISSN 0022-0957
Wydawca: Oxford University Press
DOI: 10.1093/jxb/erz457

BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

Autorzy: Paulo Rapazote-Flores, Micha Bayer, Linda Milne, Claus-Dieter Mayer, John Fuller, Wenbin Guo, Pete E. Hedley, Jenny Morris, Claire Halpin, Jason Kam, Sarah M. McKim, Monika Zwirek, M. Cristina Casao, Abdellah Barakate, Miriam Schreiber, Gordon Stephen, Runxuan Zhang, John W. S. Brown, Robbie Waugh, Craig G. Simpson
Opublikowane w: BMC Genomics, Numer 20/1, 2019, ISSN 1471-2164
Wydawca: BioMed Central
DOI: 10.1186/s12864-019-6243-7

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae

Autorzy: Volodymyr Radchuk, Rajiv Sharma, Elena Potokina, Ruslana Radchuk, Diana Weier, Eberhard Munz, Miriam Schreiber, Martin Mascher, Nils Stein, Thomas Wicker, Benjamin Kilian, Ljudmilla Borisjuk
Opublikowane w: The Plant Journal, 2019, ISSN 0960-7412
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14363

desynaptic5 carries a spontaneous semi-dominant mutation affecting Disrupted Meiotic cDNA 1 in barley

Autorzy: Isabelle Colas, Abdellah Barakate, Malcolm Macaulay, Miriam Schreiber, Jennifer Stephens, Sebastian Vivera, Claire Halpin, Robbie Waugh, Luke Ramsay
Opublikowane w: Journal of Experimental Botany, Numer 70/10, 2019, Strona(/y) 2683-2698, ISSN 0022-0957
Wydawca: Oxford University Press
DOI: 10.1093/jxb/erz080

A Comparison of Mainstream Genotyping Platforms for the Evaluation and Use of Barley Genetic Resources

Autorzy: Benoit Darrier, Joanne Russell, Sara G. Milner, Pete E. Hedley, Paul D. Shaw, Malcolm Macaulay, Luke D. Ramsay, Claire Halpin, Martin Mascher, Delphine L. Fleury, Peter Langridge, Nils Stein, Robbie Waugh
Opublikowane w: Frontiers in Plant Science, Numer 10, 2019, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.00544

Application of a Sensitive and Reproducible Label-Free Proteomic Approach to Explore the Proteome of Individual Meiotic-Phase Barley Anthers

Autorzy: Dominika Lewandowska, Runxuan Zhang, Isabelle Colas, Nicola Uzrek, Robbie Waugh
Opublikowane w: Frontiers in Plant Science, Numer 10, 2019, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.00393

Genome editing of potato using CRISPR technologies: current development and future prospective

Autorzy: Sarbesh Das Dangol, Abdellah Barakate, Jennifer Stephens, Mehmet Emin Çalıskan, Allah Bakhsh
Opublikowane w: Plant Cell, Tissue and Organ Culture (PCTOC), Numer 139/2, 2019, Strona(/y) 403-416, ISSN 0167-6857
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s11240-019-01662-y

A highly mutagenised barley (cv. Golden Promise) TILLING population coupled with strategies for screening-by-sequencing

Autorzy: Miriam Schreiber, Abdellah Barakate, Nicola Uzrek, Malcolm Macaulay, Adeline Sourdille, Jenny Morris, Pete E. Hedley, Luke Ramsay, Robbie Waugh
Opublikowane w: Plant Methods, Numer 15/1, 2019, ISSN 1746-4811
Wydawca: BioMed Central
DOI: 10.1186/s13007-019-0486-9

A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise

Autorzy: Miriam Schreiber, Martin Mascher, Jonathan Wright, Sudharasan Padmarasu, Axel Himmelbach, Darren Heavens, Linda Milne, Bernardo J. Clavijo, Nils Stein, Robbie Waugh
Opublikowane w: "G3&#58; Genes|Genomes|Genetics", 2020, Strona(/y) g3.401010.2019, ISSN 2160-1836
Wydawca: Genetics Society of America
DOI: 10.1534/g3.119.401010

APETALA2 functions as a temporal factor together with BLADE-ON-PETIOLE2 and MADS29 to control flower and grain development in barley

Autorzy: Jennifer R. Shoesmith, Charles Ugochukwu Solomon, Xiujuan Yang, Laura G. Wilkinson, Scott Sheldrick, Ewan van Eijden, Sanne Couwenberg, Laura M. Pugh, Mhmoud Eskan, Jennifer Stephens, Abdellah Barakate, Sinéad Drea, Kelly Houston, Matthew R. Tucker, Sarah M. McKim
Opublikowane w: Development, 2019, Strona(/y) dev.194894, ISSN 0950-1991
Wydawca: The Company of Biologists Ltd.
DOI: 10.1242/dev.194894

A Modular Tray Growth System for Barley

Autorzy: Mikel Arrieta, Isabelle Colas, Malcolm Macaulay, Robbie Waugh, Luke Ramsay
Opublikowane w: Plant Meiosis - Methods and Protocols, Numer 2061, 2020, Strona(/y) 367-379, ISBN 978-1-4939-9817-3
Wydawca: Springer New York
DOI: 10.1007/978-1-4939-9818-0_26

Following the Formation of Synaptonemal Complex Formation in Wheat and Barley by High-Resolution Microscopy

Autorzy: Benoit Darrier, Mikel Arrieta, Sybille U. Mittmann, Pierre Sourdille, Luke Ramsay, Robbie Waugh, Isabelle Colas
Opublikowane w: Plant Meiosis - Methods and Protocols, Numer 2061, 2020, Strona(/y) 207-215, ISBN 978-1-4939-9817-3
Wydawca: Springer New York
DOI: 10.1007/978-1-4939-9818-0_15

Preparation of Barley Pollen Mother Cells for Confocal and Super Resolution Microscopy

Autorzy: Sybille Mittmann, Mikel Arrieta, Luke Ramsay, Robbie Waugh, Isabelle Colas
Opublikowane w: Barley - Methods and Protocols, Numer 1900, 2019, Strona(/y) 167-179, ISBN 978-1-4939-8942-3
Wydawca: Springer New York
DOI: 10.1007/978-1-4939-8944-7_11

Time-resolved transcriptome of barley anthers and meiocytes reveals robust and largely stable gene expression changes at meiosis entry

Autorzy: Abdellah Barakate, Jamie Orr, Miriam Schreiber, Isabelle Colas, Dominika Lewandowska, Nicola McCallum, Malcolm Macaulay, Jenny Morris, Mikel Arrieta, Pete E. Hedley, Luke Ramsay, Robbie Waugh
Opublikowane w: BioRxiv, 2020, ISSN 0362-4331
Wydawca: New York Times Company
DOI: 10.1101/2020.04.20.051425

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