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hybridFRET - deciphering biomolecular structure and dynamics

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Publications

Single-molecule FRET reveals multiscale chromatin dynamics modulated by HP1α

Author(s): Sinan Kilic, Suren Felekyan, Olga Doroshenko, Iuliia Boichenko, Mykola Dimura, Hayk Vardanyan, Louise C. Bryan, Gaurav Arya, Claus A. M. Seidel, Beat Fierz
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-017-02619-5

Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

Author(s): Björn Hellenkamp, Sonja Schmid, Olga Doroshenko, Oleg Opanasyuk, Ralf Kühnemuth, Soheila Rezaei Adariani, Benjamin Ambrose, Mikayel Aznauryan, Anders Barth, Victoria Birkedal, Mark E. Bowen, Hongtao Chen, Thorben Cordes, Tobias Eilert, Carel Fijen, Christian Gebhardt, Markus Götz, Giorgos Gouridis, Enrico Gratton, Taekjip Ha, Pengyu Hao, Christian A. Hanke, Andreas Hartmann, Jelle Hendrix, Lass
Published in: Nature Methods, Issue 15/9, 2018, Page(s) 669-676, ISSN 1548-7091
DOI: 10.1038/s41592-018-0085-0

High precision FRET studies reveal reversible transitions in nucleosomes between microseconds and minutes

Author(s): Alexander Gansen, Suren Felekyan, Ralf Kühnemuth, Kathrin Lehmann, Katalin Tóth, Claus A. M. Seidel, Jörg Langowski
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-06758-1

Combining Graphical and Analytical Methods with Molecular Simulations to Analyze Time-resolved FRET-measurements of Labeled Macromolecules Accurately

Author(s): Thomas-Otavio Peulen, Oleg Opanasyuk, Claus A.M. Seidel
Published in: The Journal of Physical Chemistry B, Issue 121, 2017, Page(s) 8211-8241, ISSN 1520-6106
DOI: 10.1021/acs.jpcb.7b03441

Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems

Author(s): Mykola Dimura, Thomas O Peulen, Christian A Hanke, Aiswaria Prakash, Holger Gohlke, Claus AM Seidel
Published in: Current Opinion in Structural Biology, Issue 40, 2016, Page(s) 163-185, ISSN 0959-440X
DOI: 10.1016/j.sbi.2016.11.012

Dynamics of the nucleosomal histone H3 N-terminal tail revealed by high precision single-molecule FRET

Author(s): Kathrin Lehmann, Suren Felekyan, Ralf Kühnemuth, Mykola Dimura, Katalin Tóth, Claus A M Seidel, Jörg Langowski
Published in: Nucleic Acids Research, Issue 48/3, 2020, Page(s) 1551-1571, ISSN 0305-1048
DOI: 10.1093/nar/gkz1186

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

Author(s): Berman, H.M., Adams, P.D., Bonvin, A.A., Burley, S.K., Carragher, B., Chiu, W., DiMaio, F., Ferrin, T.E., Gabanyi, M.J., Goddard, T.D., Griffin, P.R., Haas, J., Hanke, C.A., Hoch, J.C., Hummer, G., Kurisu, G., Lawson, C.L., Leitner, A., Markley, J.L., Meiler, J., Montelione, G.T., Phillips, G.N., Prisner, T., Rappsilber, J., Schriemer, D.C., Schwede, T., Seidel, C. A. M., Strutzenberg, T.S., Sverg
Published in: Structure, Issue 27, 2019, Page(s) 1745-1759, ISSN 0969-2126
DOI: 10.1016/j.str.2019.11.002

Specific Conformational Dynamics and Expansion Underpin a Multi-Step Mechanism for Specific Binding of p27 with Cdk2/Cyclin A

Author(s): Maksym Tsytlonok, Katherina Hemmen, George Hamilton, Narendar Kolimi, Suren Felekyan, Claus A.M. Seidel, Peter Tompa, Hugo Sanabria
Published in: Journal of Molecular Biology, Issue 432/9, 2020, Page(s) 2998-3017, ISSN 0022-2836
DOI: 10.1016/j.jmb.2020.02.010

Resolving dynamics and function of transient states in single enzyme molecules

Author(s): Hugo Sanabria, Dmitro Rodnin, Katherina Hemmen, Thomas Peulen, Suren Felekyan, Mark R. Fleissner, Mykola Dimura, Felix Koberling, Ralf Kühnemuth, Wayne Hubbell, Holger Gohlke, Claus A.M. Seidel
Published in: 2018

Dynamic anticipation by Cdk2/Cyclin A-bound p27 mediates signal integration in cell cycle regulation

Author(s): Maksym Tsytlonok, Hugo Sanabria, Yuefeng Wang, Suren Felekyan, Katherina Hemmen, Aaron Phillips, Mi-Kyung Yun, Brett Waddell, Cheon-Gil Park, Sivaraja Vaithiyalingam, Luigi Iconaru, Stephen W. White, Peter Tompa, Claus A. M. Seidel, Richard Kriwacki
Published in: 2018

Automated and optimally FRET-assisted structural modeling

Author(s): Mykola Dimura, Thomas O. Peulen, Hugo Sanabria, Dmitro Rodnin, Katherina Hemmen, Claus A.M. Seidel, Holger Gohlke
Published in: 2019