hybridFRET - deciphering biomolecular structure and dynamics | hybridFRET | Project | Results | H2020 | CORDIS

FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

Autorzy: Eitan Lerner, Anders Barth, Jelle Hendrix, Benjamin Ambrose, Victoria Birkedal, Scott C Blanchard, Richard Börner, Hoi Sung Chung, Thorben Cordes, Timothy D Craggs, Ashok A Deniz, Jiajie Diao, Jingyi Fei, Ruben L Gonzalez, Irina V Gopich, Taekjip Ha, Christian A Hanke, Gilad Haran, Nikos S Hatzakis, Sungchul Hohng, Seok-Cheol Hong, Thorsten Hugel, Antonino Ingargiola, Chirlmin Joo, Achillefs N Ka
Opublikowane w: eLife, Numer 10, 2021, Strona(/y) e60416, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.60416

Fundamental photophysics of isomorphic and expanded fluorescent nucleoside analogues

Autorzy: Dmytro Dziuba, Pascal Didier, Stefano Ciaco, Anders Barth, Claus A. M. Seidel, Yves Mély
Opublikowane w: Chemical Society Reviews, Numer 50/12, 2021, Strona(/y) 7062-7107, ISSN 0306-0012
Wydawca: Royal Society of Chemistry
DOI: 10.1039/d1cs00194a

Single-molecule FRET reveals multiscale chromatin dynamics modulated by HP1α

Autorzy: Sinan Kilic, Suren Felekyan, Olga Doroshenko, Iuliia Boichenko, Mykola Dimura, Hayk Vardanyan, Louise C. Bryan, Gaurav Arya, Claus A. M. Seidel, Beat Fierz
Opublikowane w: Nature Communications, Numer 9/1, 2018, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-017-02619-5

Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

Autorzy: Björn Hellenkamp, Sonja Schmid, Olga Doroshenko, Oleg Opanasyuk, Ralf Kühnemuth, Soheila Rezaei Adariani, Benjamin Ambrose, Mikayel Aznauryan, Anders Barth, Victoria Birkedal, Mark E. Bowen, Hongtao Chen, Thorben Cordes, Tobias Eilert, Carel Fijen, Christian Gebhardt, Markus Götz, Giorgos Gouridis, Enrico Gratton, Taekjip Ha, Pengyu Hao, Christian A. Hanke, Andreas Hartmann, Jelle Hendrix, Lass
Opublikowane w: Nature Methods, Numer 15/9, 2018, Strona(/y) 669-676, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1038/s41592-018-0085-0

High precision FRET studies reveal reversible transitions in nucleosomes between microseconds and minutes

Autorzy: Alexander Gansen, Suren Felekyan, Ralf Kühnemuth, Kathrin Lehmann, Katalin Tóth, Claus A. M. Seidel, Jörg Langowski
Opublikowane w: Nature Communications, Numer 9/1, 2018, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-018-06758-1

Combining Graphical and Analytical Methods with Molecular Simulations to Analyze Time-resolved FRET-measurements of Labeled Macromolecules Accurately

Autorzy: Thomas-Otavio Peulen, Oleg Opanasyuk, Claus A.M. Seidel
Opublikowane w: The Journal of Physical Chemistry B, Numer 121, 2017, Strona(/y) 8211-8241, ISSN 1520-6106
Wydawca: American Chemical Society
DOI: 10.1021/acs.jpcb.7b03441

Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems

Autorzy: Mykola Dimura, Thomas O Peulen, Christian A Hanke, Aiswaria Prakash, Holger Gohlke, Claus AM Seidel
Opublikowane w: Current Opinion in Structural Biology, Numer 40, 2016, Strona(/y) 163-185, ISSN 0959-440X
Wydawca: Elsevier BV
DOI: 10.1016/j.sbi.2016.11.012

Dynamics of the nucleosomal histone H3 N-terminal tail revealed by high precision single-molecule FRET

Autorzy: Kathrin Lehmann, Suren Felekyan, Ralf Kühnemuth, Mykola Dimura, Katalin Tóth, Claus A M Seidel, Jörg Langowski
Opublikowane w: Nucleic Acids Research, Numer 48/3, 2020, Strona(/y) 1551-1571, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkz1186

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

Autorzy: Berman, H.M., Adams, P.D., Bonvin, A.A., Burley, S.K., Carragher, B., Chiu, W., DiMaio, F., Ferrin, T.E., Gabanyi, M.J., Goddard, T.D., Griffin, P.R., Haas, J., Hanke, C.A., Hoch, J.C., Hummer, G., Kurisu, G., Lawson, C.L., Leitner, A., Markley, J.L., Meiler, J., Montelione, G.T., Phillips, G.N., Prisner, T., Rappsilber, J., Schriemer, D.C., Schwede, T., Seidel, C. A. M., Strutzenberg, T.S., Sverg
Opublikowane w: Structure, Numer 27, 2019, Strona(/y) 1745-1759, ISSN 0969-2126
Wydawca: Cell Press
DOI: 10.1016/j.str.2019.11.002

Specific Conformational Dynamics and Expansion Underpin a Multi-Step Mechanism for Specific Binding of p27 with Cdk2/Cyclin A

Autorzy: Maksym Tsytlonok, Katherina Hemmen, George Hamilton, Narendar Kolimi, Suren Felekyan, Claus A.M. Seidel, Peter Tompa, Hugo Sanabria
Opublikowane w: Journal of Molecular Biology, Numer 432/9, 2020, Strona(/y) 2998-3017, ISSN 0022-2836
Wydawca: Academic Press
DOI: 10.1016/j.jmb.2020.02.010

Integrative dynamic structural biology unveils conformers essential for the oligomerization of a large GTPase

Autorzy: Thomas-Otavio Peulen, Carola S. Hengstenberg, Ralf Biehl, Mykola Dimura, Charlotte Lorenz, Alessandro Valeri, Semra Ince, Tobias Vöpel, Bela Farago, Holger Gohlke, Johann Klare, Andreas M. Stadler, Claus A.M. Seidel, Christian Hermann
Opublikowane w: arXiv, 2020
Wydawca: arXiv.org

Unraveling multi-state molecular dynamics in single-molecule FRET experiments - Part I: Theory of FRET-lines

Autorzy: Anders Barth, Oleg Opanasyuk, Thomas-Otavio Peulen, Suren Felekyan, Stanislav Kalinin, Hugo Sanabria, Claus A.M. Seidel
Opublikowane w: arXiv, 2021
Wydawca: arXiv.org

FRET nanoscopy enables seamless imaging of molecular assemblies with sub-nanometer resolution

Autorzy: Jan-Hendrik Budde, Nicolaas van der Voort, Suren Felekyan, Julian Folz, Ralf Kühnemuth, Paul Lauterjung, Markus Köhler, Andreas Schönle, Julian Sindram, Marius Otten, Matthias Karg, Christian Herrmann, Anders Barth, Claus A. M. Seidel
Opublikowane w: arXiv, 2021
Wydawca: arXiv.org

Resolving dynamics and function of transient states in single enzyme molecules

Autorzy: Hugo Sanabria, Dmitro Rodnin, Katherina Hemmen, Thomas Peulen, Suren Felekyan, Mark R. Fleissner, Mykola Dimura, Felix Koberling, Ralf Kühnemuth, Wayne Hubbell, Holger Gohlke, Claus A.M. Seidel
Opublikowane w: 2018
Wydawca: arXiv.org

Dynamic anticipation by Cdk2/Cyclin A-bound p27 mediates signal integration in cell cycle regulation

Autorzy: Maksym Tsytlonok, Hugo Sanabria, Yuefeng Wang, Suren Felekyan, Katherina Hemmen, Aaron Phillips, Mi-Kyung Yun, Brett Waddell, Cheon-Gil Park, Sivaraja Vaithiyalingam, Luigi Iconaru, Stephen W. White, Peter Tompa, Claus A. M. Seidel, Richard Kriwacki
Opublikowane w: 2018
Wydawca: arXiv.org

Unraveling multi-state molecular dynamics in single-molecule FRET experiments - Part II: Quantitative analysis of multi-state kinetic networks

Autorzy: Oleg Opanasyuk, Anders Barth, Thomas-Otavio Peulen, Suren Felekyan, Stanislav Kalinin, Hugo Sanabria, Claus A.M. Seidel
Opublikowane w: arXiv, 2021
Wydawca: arXiv.org

Efficient FRET-assisted computational structural modelling

Autorzy: Mykola Dimura
Opublikowane w: 2020
Wydawca: Heinrich Heine University Duesseldorf

Accurate structural determination of biomolecules via single-molecule high-precision FRET measurements

Autorzy: Olga Doroshenko
Opublikowane w: 2019
Wydawca: Heinrich Heine University Duesseldorf

Mapping protein structure and dynamics by Förster Resonance Energy Transfer in vitro and in live cells

Autorzy: Thomas-Otavio Peulen
Opublikowane w: 2017
Wydawca: Heinrich Heine University Duesseldorf

Automated and optimally FRET-assisted structural modeling

Autorzy: Mykola Dimura, Thomas-Otavio Peulen, Hugo Sanabria, Dmitro Rodnin, Katherina Hemmen, Christian A. Hanke, Claus A. M. Seidel, Holger Gohlke
Opublikowane w: Nature Communications, Numer 11/1, 2020, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-020-19023-1

hybridFRET - deciphering biomolecular structure and dynamics

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