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CEREALPATH - Training in innovative and integrated control of cereal diseases

Deliverables

Identification of new endophytes that show potential for disease control

Identification of new endophytes that show potential for disease control

Workshop 3 - Biologicals and bioactives for disease control

Training in knowledge of different biological and other alternative agents that can control diseases (month 17); Knowledge on the cutting edge literature on biological control and bioactives in relation to cereal pathology (month 17 and afterwards through the online journal club); Improved network with experts in the field (month 17).

Progress report submitted to REA

Progress report submitted to REA Other internal network reports: inception report (M4), annual progress report (M12,M24,36), and final report (M48)

Elucidation of the effect of host genotype on endophyte efficacy for disease control

Elucidation of the effect of host genotype on endophyte efficacy for disease control

Determination of the complementarity of endophytes and bioactive silicon

Determination of the complementarity of endophytes and bioactive silicon

Determination of the potential of RNAi for broad spectrum disease control

Determination of the potential of RNAi for broad spectrum disease control

Draft periodic report

Draft periodic report (for the purpose of the mid term review meeting)

Publications and outreach

Publications and outreach (from month 12 to 52)

Website, social media setup

Website and social media set up

Determination of the potential of manipulating RNAi for disease control via wheat breeding

Determination of the potential of manipulating RNAi for disease control via wheat breeding

Searching for OpenAIRE data...

Publications

Editorial: Plant Disease Management in the Post-genomic Era: From Functional Genomics to Genome Editing.

Author(s): Sabrina Sarrocco; Alfredo Herrera-Estrella; David B. Collinge
Published in: Sarrocco , S , Herrera-estrella , A & Collinge , D B 2020 , ' Plant Disease Management in the Post-genomic Era : From Functional Genomics to Genome Editing ' , Frontiers in Microbiology , vol. 11 , 107 , pp. 1-2 . https://doi.org/10.3389/fmicb.2020.00107, 18, 2020, Page(s) 107, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fmicb.2020.00107

Cross-kingdom RNA trafficking and environmental RNAi — nature's blueprint for modern crop protection strategies

Author(s): Cai, Qiang; He, Baoye; Kogel, Karl-Heinz; Jin, Hailing
Published in: Current Opinion in Microbiology, 7, 2018, ISSN 1369-5274
Publisher: Elsevier BV
DOI: 10.1016/j.mib.2018.02.003

Identification of two endophytic fungi that control Septoria tritici blotch in the field, using a structured screening approach

Author(s): Meike A.C. Latz, Birgit Jensen, David B. Collinge, Hans Jørgen Lyngs Jørgensen
Published in: Biological Control, 141, 2020, Page(s) 104128, ISSN 1049-9644
Publisher: Academic Press
DOI: 10.1016/j.biocontrol.2019.104128

Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat Spikes

Author(s): Edward C. Rojas, Rumakanta Sapkota, Birgit Jensen, Hans J. L. Jørgensen, Tina Henriksson, Lise Nistrup Jørgensen, Mogens Nicolaisen, David B. Collinge
Published in: Microbial Ecology, 2019, ISSN 0095-3628
Publisher: Springer Verlag
DOI: 10.1007/s00248-019-01426-3

Further Elucidation of the Argonaute and Dicer Protein Families in the Model Grass Species Brachypodium distachyon

Author(s): Ena Šečić, Silvia Zanini, Karl-Heinz Kogel
Published in: Frontiers in Plant Science, 10, 2019, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.01332

A Bioinformatics Pipeline for the Analysis and Target Prediction of RNA Effectors in Bidirectional Communication During Plant–Microbe Interactions

Author(s): Silvia Zanini, Ena Šečić, Lukas Jelonek, Karl-Heinz Kogel
Published in: Frontiers in Plant Science, 9, 2018, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2018.01212

Association mapping of wheat Fusarium head blight resistance-related regions using a candidate-gene approach and their verification in a biparental population

Author(s): Karolina Maria Słomińska-Durdasiak, Sonja Kollers, Viktor Korzun, Daniela Nowara, Patrick Schweizer, Armin Djamei, Jochen Christoph Reif
Published in: Theoretical and Applied Genetics, 2019, ISSN 0040-5752
Publisher: Springer Verlag
DOI: 10.1007/s00122-019-03463-5

Endophytic fungi as biocontrol agents: elucidating mechanisms in disease suppression

Author(s): Meike A.C. Latz, Birgit Jensen, David B. Collinge, Hans J.L. Jørgensen
Published in: Plant Ecology & Diversity, 11/5-6, 2018, Page(s) 555-567, ISSN 1755-0874
Publisher: Taylor & Francis
DOI: 10.1080/17550874.2018.1534146

Hidden Fungi: Combining Culture-Dependent and -Independent DNA Barcoding Reveals Inter-Plant Variation in Species Richness of Endophytic Root Fungi in Elymus repens

Author(s): Anna K. Høyer; Trevor R. Hodkinson
Published in: Issue 6, 4, 2021, ISSN 2309-608X
Publisher: MDPI
DOI: 10.3390/jof7060466

Characterization of the volatilome of Lysobacter capsici AZ78 and its bioactivity against soilborne plant pathogenic fungi and oomycetes

Author(s): Vlassi, A.; Puopolo, G.; Perazzolli, M.; Nesler, A.; Parich, A.; Schuhmacher, R.
Published in: BOKU University PhD conference IFA-TULLN, 17, 2018
Publisher: BOKU University

Zurich-Basel Plant Science Center: PSC Summer Schools 2014 and 2016, Agriculture in transformation – Concepts for agriculture production systems that are socially fair, environmentally safe and economically viable

Author(s): Paschke; Melanie (Ed) Kangara; N.; Marchal; C.; Ndougonna C.; and Słomińska-Durdasiak K Kolodziej; M.C.; Karki; S.J.; Malla K.B.; and Zanini; S. Soto; M.; Santos; M.; Reyhanloo; T.; and Drakopoulos; D. Hoeyer; A.J.; Ramoneda; J.; Merz; Q.; and Welker; L Deshaies; M; Gimeno; A.; Rahn; E.; and Rojas; E.C.
Published in: Agriculture in transformation – Concepts for agriculture production systems that are socially fair, environmentally safe and economically viable, 4, 2017
Publisher: ETH Library

Zurich-Basel Plant Science Center: PSC Summer Schools 2014 and 2016, Agriculture in transformation – Concepts for agriculture production systems that are socially fair, environmentally safe and economically viable

Author(s): Paschke, Melanie (Ed) Kangara, N., Marchal, C., Ndougonna C., and Słomińska-Durdasiak K Kolodziej, M.C., Karki, S.J., Malla K.B., and Zanini, S. Soto, M., Santos, M., Reyhanloo, T., and Drakopoulos, D. Hoeyer, A.J., Ramoneda, J., Merz, Q., and Welker, L Deshaies, M, Gimeno, A., Rahn, E., and Rojas, E.C.
Published in: 2017
Publisher: Idea Verlag
DOI: 10.3929/ethz-b-000218321

Fusarium diseases: biology and management perspectives

Author(s): Edward C. Rojas, Hans J. L. Jørgensen, Birgit Jensen, David B. Collinge
Published in: Integrated disease management of wheat and barley, 2018, Page(s) 23-45, ISBN 9781-786762160
Publisher: Burleigh Dodds Science Publishing
DOI: 10.19103/as.2018.0039.02

Searching for Novel Fungal Biological Control Agents for Plant Disease Control Among Endophytes

Author(s): David B. Collinge, Hans J. L. Jørgensen, Meike A. C. Latz, Andrea Manzotti, Fani Ntana, Edward C. Rojas, Birgit Jensen
Published in: Endophytes for a Growing World, 2019, Page(s) 25-51, ISBN 9781-108607667
Publisher: Cambridge University Press
DOI: 10.1017/9781108607667.003

Emerging Methods for Biological Control of Barley Diseases Including the Role of Endophytes

Author(s): Anna K. Høyer, Hans J. L. Jørgensen, Birgit Jensen, Brian R. Murphy, Trevor R. Hodkinson
Published in: Endophytes for a Growing World, 2019, Page(s) 93-119, ISBN 9781-108607667
Publisher: Cambridge University Press
DOI: 10.1017/9781108607667.006

Discovery of interaction-related sRNAs and their targets in the Brachypodium distachyon and Magnaporthe oryzae pathosystem

Author(s): Silvia Zanini, Ena Šečić, Tobias Busche, Jörn Kalinowski, Karl-Heinz Kogel
Published in: 2019
Publisher: bioRxiv, Cold Spring Harbor Laboratory,
DOI: 10.1101/631945

K-PIE: using K-means algorithm for Percentage Infection symptoms Estimation

Author(s): Vanessa Bueno-Sancho; Pilar Corredor-Moreno; Ngonidzashe Kangara; Diane G.O. Saunders
Published in: 2019
Publisher: Zenodo
DOI: 10.5281/zenodo.3584148

Isolation and characterisation of novel fungal root endophytes from Elymus repens (Poaceae) for resistance to Fusarium, Gaeummanomyces and Pyrenophora

Author(s): HØYER, ANNA KAJA
Published in: 2019
Publisher: Trinity College Dublin

Identification and characterisation of effector proteins from Zymoseptoria tritici

Author(s): Sujit Jung Karki
Published in: 2019
Publisher: University College Dublin

Characterisation of genes involved in the wheat response to Fusarium head blight disease

Author(s): Malla, Keshav Bahadur
Published in: 2019
Publisher: University College Dublin

Endophytic fungi in wheat : plant-microbe interactions from molecular to community scale

Author(s): Meike Latz
Published in: 2019
Publisher: University of Copenhagen

Fungal Endophytes as Novel Biocontrol Agents of Fusarium Head Blight in Wheat

Author(s): ROJAS, EDWARD C,
Published in: 2019
Publisher: University of Copenhagen

Investigating the potential of biologically derived agents to reduce the effects of stress in wheat

Author(s): Myriam Deshaies
Published in: 2019
Publisher: University College Dublin