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CEREALPATH - Training in innovative and integrated control of cereal diseases

Livrables

Identification of new endophytes that show potential for disease control

Identification of new endophytes that show potential for disease control

Workshop 3 - Biologicals and bioactives for disease control

Training in knowledge of different biological and other alternative agents that can control diseases (month 17); Knowledge on the cutting edge literature on biological control and bioactives in relation to cereal pathology (month 17 and afterwards through the online journal club); Improved network with experts in the field (month 17).

Progress report submitted to REA

Progress report submitted to REA Other internal network reports: inception report (M4), annual progress report (M12,M24,36), and final report (M48)

Elucidation of the effect of host genotype on endophyte efficacy for disease control

Elucidation of the effect of host genotype on endophyte efficacy for disease control

Determination of the complementarity of endophytes and bioactive silicon

Determination of the complementarity of endophytes and bioactive silicon

Determination of the potential of RNAi for broad spectrum disease control

Determination of the potential of RNAi for broad spectrum disease control

Draft periodic report

Draft periodic report (for the purpose of the mid term review meeting)

Publications and outreach

Publications and outreach (from month 12 to 52)

Website, social media setup

Website and social media set up

Determination of the potential of manipulating RNAi for disease control via wheat breeding

Determination of the potential of manipulating RNAi for disease control via wheat breeding

Publications

Identification of two endophytic fungi that control Septoria tritici blotch in the field, using a structured screening approach

Auteurs: Meike A.C. Latz, Birgit Jensen, David B. Collinge, Hans Jørgen Lyngs Jørgensen
Publié dans: Biological Control, Issue 141, 2020, Page(s) 104128, ISSN 1049-9644
DOI: 10.1016/j.biocontrol.2019.104128

Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat Spikes

Auteurs: Edward C. Rojas, Rumakanta Sapkota, Birgit Jensen, Hans J. L. Jørgensen, Tina Henriksson, Lise Nistrup Jørgensen, Mogens Nicolaisen, David B. Collinge
Publié dans: Microbial Ecology, 2019, ISSN 0095-3628
DOI: 10.1007/s00248-019-01426-3

Further Elucidation of the Argonaute and Dicer Protein Families in the Model Grass Species Brachypodium distachyon

Auteurs: Ena Šečić, Silvia Zanini, Karl-Heinz Kogel
Publié dans: Frontiers in Plant Science, Issue 10, 2019, ISSN 1664-462X
DOI: 10.3389/fpls.2019.01332

A Bioinformatics Pipeline for the Analysis and Target Prediction of RNA Effectors in Bidirectional Communication During Plant–Microbe Interactions

Auteurs: Silvia Zanini, Ena Šečić, Lukas Jelonek, Karl-Heinz Kogel
Publié dans: Frontiers in Plant Science, Issue 9, 2018, ISSN 1664-462X
DOI: 10.3389/fpls.2018.01212

Association mapping of wheat Fusarium head blight resistance-related regions using a candidate-gene approach and their verification in a biparental population

Auteurs: Karolina Maria Słomińska-Durdasiak, Sonja Kollers, Viktor Korzun, Daniela Nowara, Patrick Schweizer, Armin Djamei, Jochen Christoph Reif
Publié dans: Theoretical and Applied Genetics, 2019, ISSN 0040-5752
DOI: 10.1007/s00122-019-03463-5

Endophytic fungi as biocontrol agents: elucidating mechanisms in disease suppression

Auteurs: Meike A.C. Latz, Birgit Jensen, David B. Collinge, Hans J.L. Jørgensen
Publié dans: Plant Ecology & Diversity, Issue 11/5-6, 2018, Page(s) 555-567, ISSN 1755-0874
DOI: 10.1080/17550874.2018.1534146

Fusarium diseases: biology and management perspectives

Auteurs: Edward C. Rojas, Hans J. L. Jørgensen, Birgit Jensen, David B. Collinge
Publié dans: Integrated disease management of wheat and barley, 2018, Page(s) 23-45
DOI: 10.19103/as.2018.0039.02

Searching for Novel Fungal Biological Control Agents for Plant Disease Control Among Endophytes

Auteurs: David B. Collinge, Hans J. L. Jørgensen, Meike A. C. Latz, Andrea Manzotti, Fani Ntana, Edward C. Rojas, Birgit Jensen
Publié dans: Endophytes for a Growing World, 2019, Page(s) 25-51
DOI: 10.1017/9781108607667.003

Emerging Methods for Biological Control of Barley Diseases Including the Role of Endophytes

Auteurs: Anna K. Høyer, Hans J. L. Jørgensen, Birgit Jensen, Brian R. Murphy, Trevor R. Hodkinson
Publié dans: Endophytes for a Growing World, 2019, Page(s) 93-119
DOI: 10.1017/9781108607667.006

Discovery of interaction-related sRNAs and their targets in the Brachypodium distachyon and Magnaporthe oryzae pathosystem

Auteurs: Silvia Zanini, Ena Šečić, Tobias Busche, Jörn Kalinowski, Karl-Heinz Kogel
Publié dans: 2019
DOI: 10.1101/631945

K-PIE: using K-means algorithm for Percentage Infection symptoms Estimation

Auteurs: Vanessa Bueno-Sancho; Pilar Corredor-Moreno; Ngonidzashe Kangara; Diane G.O. Saunders
Publié dans: 2019
DOI: 10.5281/zenodo.3584148

Zurich-Basel Plant Science Center: PSC Summer Schools 2014 and 2016, Agriculture in transformation – Concepts for agriculture production systems that are socially fair, environmentally safe and economically viable

Auteurs: Paschke, Melanie (Ed) Kangara, N., Marchal, C., Ndougonna C., and Słomińska-Durdasiak K Kolodziej, M.C., Karki, S.J., Malla K.B., and Zanini, S. Soto, M., Santos, M., Reyhanloo, T., and Drakopoulos, D. Hoeyer, A.J., Ramoneda, J., Merz, Q., and Welker, L Deshaies, M, Gimeno, A., Rahn, E., and Rojas, E.C.
Publié dans: 2017
DOI: 10.3929/ethz-b-000218321

Isolation and characterisation of novel fungal root endophytes from Elymus repens (Poaceae) for resistance to Fusarium, Gaeummanomyces and Pyrenophora

Auteurs: HØYER, ANNA KAJA
Publié dans: 2019

Identification and characterisation of effector proteins from Zymoseptoria tritici

Auteurs: Sujit Jung Karki
Publié dans: 2019

Characterisation of genes involved in the wheat response to Fusarium head blight disease

Auteurs: Malla, Keshav Bahadur
Publié dans: 2019

Endophytic fungi in wheat : plant-microbe interactions from molecular to community scale

Auteurs: Meike Latz
Publié dans: 2019

Fungal Endophytes as Novel Biocontrol Agents of Fusarium Head Blight in Wheat

Auteurs: ROJAS, EDWARD C,
Publié dans: 2019

Investigating the potential of biologically derived agents to reduce the effects of stress in wheat

Auteurs: Myriam Deshaies
Publié dans: 2019