Zebrafish vision in its natural context: from natural scenes through retinal and central processing to behaviour.

Project Information

NeuroVisEco

Grant agreement ID: 677687

DOI

10.3030/677687

Project closed

EC signature date 22 April 2016

Start date 1 June 2016

End date 31 May 2022

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 500 000,00

EU contribution

€ 1 500 000,00

Coordinated by

THE UNIVERSITY OF SUSSEX
United Kingdom

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Non-peer reviewed articles (3)

TReND in Africa: Toward a Truly Global (Neuro)science Community

Author(s): Tom Baden, Mahmoud Bukar Maina, Andre Maia Chagas, Yunusa Garba Mohammed, Thomas O. Auer, Ana Silbering, Lukas von Tobel, Marie Pertin, Renee Hartig, Jelena Aleksic, Ibukun Akinrinade, Mosab A. Awadelkareem, Artemis Koumoundourou, Aled Jones, Fabiana Arieti, Andrew Beale, Daniel Münch, Samyra Cury Salek, Sadiq Yusuf, Lucia L. Prieto-Godino
Published in: Neuron, Issue 107/3, 2020, Page(s) 412-416, ISSN 0896-6273
Publisher: Cell Press
DOI: 10.1016/j.neuron.2020.06.026

Species-specific motion detectors

Author(s): Thomas Euler, Tom Baden
Published in: Nature, Issue 535/7610, 2016, Page(s) 45-46, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/nature18454

Vertebrate vision: Lessons from non-model species

Author(s): Tom Baden
Published in: Seminars in Cell & Developmental Biology, Issue 106, 2020, Page(s) 1-4, ISSN 1084-9521
Publisher: Academic Press
DOI: 10.1016/j.semcdb.2020.05.028

Peer reviewed articles (21)

A low-cost hyperspectral scanner for natural imaging and the study of animal colour vision above and under water

Author(s): N. E. Nevala, T. Baden
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-47220-6

Type-specific dendritic integration in mouse retinal ganglion cells

Author(s): Yanli Ran, Ziwei Huang, Tom Baden, Timm Schubert, Harald Baayen, Philipp Berens, Katrin Franke, Thomas Euler
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-15867-9

Fovea-like Photoreceptor Specializations Underlie Single UV Cone Driven Prey-Capture Behavior in Zebrafish

Author(s): Takeshi Yoshimatsu, Cornelius Schröder, Noora E. Nevala, Philipp Berens, Tom Baden
Published in: Neuron, Issue 107/2, 2020, Page(s) 320-337.e6, ISSN 0896-6273
Publisher: Cell Press
DOI: 10.1016/j.neuron.2020.04.021

Distinct Synaptic Transfer Functions in Same-Type Photoreceptors

Author(s): Cornelius Schröder; Jonathan Oesterle; Philipp Berens; Takeshi Yoshimatsu; Tom Baden; Tom Baden
Published in: eLife, Issue 8, 2020, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.1101/2021.02.24.432674

Circuit mechanisms for colour vision in zebrafish

Author(s): Tom Baden
Published in: Current Biology, Issue 09609822, 2021, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2021.04.053

Zebrafish Retinal Ganglion Cells Asymmetrically Encode Spectral and Temporal Information across Visual Space

Author(s): Mingyi Zhou, John Bear, Paul A. Roberts, Filip K. Janiak, Julie Semmelhack, Takeshi Yoshimatsu, Tom Baden
Published in: Current Biology, Issue 30/15, 2020, Page(s) 2927-2942.e7, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2020.05.055

African neuroscience on the global stage: Nigeria as a model

Author(s): Mahmoud Bukar Maina, Yunusa Garba Mohammed, Ali Maina Bukar, Umar Ahmad, Abubakar Tijjani Salihu, Harun A. Ibrahim, Muhammad Abdurrazak, Suleiman Kwairanga Hamidu, Aisha Umar Yaro, Mosab Ali Awadelkareem, Fayza Eid Nasr, Tom Baden
Published in: European Journal of Neuroscience, Issue 49/12, 2019, Page(s) 1544-1551, ISSN 0953-816X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ejn.14372

General features of inhibition in the inner retina

Author(s): Franke, Katrin; Baden, Tom
Published in: The Journal of Physiology, Issue 7, 2019, ISSN 1469-7793
Publisher: Wiley

The €100 lab: A 3D-printable open-source platform for fluorescence microscopy, optogenetics, and accurate temperature control during behaviour of zebrafish, Drosophila, and Caenorhabditis elegans

Author(s): Andre Maia Chagas, Lucia L. Prieto-Godino, Aristides B. Arrenberg, Tom Baden
Published in: PLOS Biology, Issue 15/7, 2017, Page(s) e2002702, ISSN 1545-7885
Publisher: PLoS
DOI: 10.1371/journal.pbio.2002702

General features of inhibition in the inner retina

Author(s): Katrin Franke, Tom Baden
Published in: The Journal of Physiology, Issue 595/16, 2017, Page(s) 5507-5515, ISSN 0022-3751
Publisher: Blackwell Publishing Inc.
DOI: 10.1113/JP273648

Openspritzer: an open hardware pressure ejection system for reliably delivering picolitre volumes

Author(s): C. J. Forman, H. Tomes, B. Mbobo, R. J. Burman, M. Jacobs, T Baden, J. V. Raimondo
Published in: Scientific Reports, Issue 7/1, 2017, Page(s) 2188, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-017-02301-2

Zebrafish Differentially Process Color across Visual Space to Match Natural Scenes

Author(s): Maxime J.Y. Zimmermann, Noora E. Nevala, Takeshi Yoshimatsu, Daniel Osorio, Dan-Eric Nilsson, Philipp Berens, Tom Baden
Published in: Current Biology, Issue 28/13, 2018, Page(s) 2018-2032.e5, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2018.04.075

Spikeling: A low-cost hardware implementation of a spiking neuron for neuroscience teaching and outreach

Author(s): Tom Baden, Ben James, Maxime J. Y. Zimmermann, Phillip Bartel, Dorieke Grijseels, Thomas Euler, Leon Lagnado, Miguel Maravall
Published in: PLOS Biology, Issue 16/10, 2018, Page(s) e2006760, ISSN 1545-7885
Publisher: PLoS
DOI: 10.1371/journal.pbio.2006760

Inhibition decorrelates visual feature representations in the inner retina

Author(s): Katrin Franke, Philipp Berens, Timm Schubert, Matthias Bethge, Thomas Euler, Tom Baden
Published in: Nature, Issue 542/7642, 2017, Page(s) 439-444, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/nature21394

Visual Neuroscience: A Retinal Ganglion Cell to Report Image Focus?

Author(s): Tom Baden, Frank Schaeffel, Philipp Berens
Published in: Current Biology, Issue 27/4, 2017, Page(s) R139-R141, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2016.12.022

Retinal Physiology: Non-Bipolar-Cell Excitatory Drive in the Inner Retina

Author(s): Tom Baden, Thomas Euler
Published in: Current Biology, Issue 26/15, 2016, Page(s) R706-R708, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2016.03.065

The retinal basis of vision in chicken

Author(s): M. Seifert, T. Baden, D. Osorio
Published in: Seminars in Cell & Developmental Biology, Issue 106, 2020, Page(s) 106-115, ISSN 1084-9521
Publisher: Academic Press
DOI: 10.1016/j.semcdb.2020.03.011

Spectral inference reveals principal cone-integration rules of the zebrafish inner retina

Author(s): Philipp Bartel; Takeshi Yoshimatsu; F. Janiak; Tom Baden; Tom Baden
Published in: Current Biology, Issue 09609822, 2021, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1101/2021.08.10.455697

LED Zappelin’: An open source LED controller for arbitrary spectrum visual stimulation and optogenetics during 2-photon imaging

Author(s): Zimmermann, M.J.Y.; Chagas, A.M.; Bartel, P.; Pop, S.; Godino, L.L. Prieto; Baden, T.
Published in: HardwareX, Issue 2, 2020, ISSN 0000-0000
Publisher: Elsevier
DOI: 10.1016/j.ohx.2020.e00127

An arbitrary-spectrum spatial visual stimulator for vision research

Author(s): Katrin Franke; André Maia Chagas; Zhijian Zhao; Maxime JY Zimmermann; Philipp Bartel; Yongrong Qiu; Klaudia P Szatko; Tom Baden; Thomas Euler
Published in: eLife, Issue 3, 2019, ISSN 0000-0000
Publisher: eLife
DOI: 10.7554/elife.48779

Leveraging open hardware to alleviate the burden of COVID-19 on global health systems

Author(s): Andre Maia Chagas, Jennifer C. Molloy, Lucia L. Prieto-Godino, Tom Baden
Published in: PLOS Biology, Issue 18/4, 2020, Page(s) e3000730, ISSN 1545-7885
Publisher: PLoS
DOI: 10.1371/journal.pbio.3000730

Monographic books (1)

The Functional Organization of Vertebrate Retinal Circuits for Vision

Author(s): Tom Baden, Timm Schubert, Philipp Berens, Thomas Euler
Published in: Oxford Research Encyclopedias, Neuroscience, Issue Online, 2018, Page(s) N/A
Publisher: Oxford Research Encyclopedias
DOI: 10.1093/acrefore/9780190264086.013.68

Other (1)

Studying a Light Sensor with Light: Multiphoton Imaging in the Retina

Author(s): Thomas Euler, Katrin Franke , Tom Baden
Published in: 2019
Publisher: preprints
DOI: 10.20944/preprints201903.0244.v1