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Publications

A Survey of Methods for 3D Histology Reconstruction

Author(s): Jonas Pichat, Juan Eugenio Iglesias, Tarek Yousry, Sébastien Ourselin, Marc Modat
Published in: Medical Image Analysis, 2018, ISSN 1361-8415
DOI: 10.1016/j.media.2018.02.004

Probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking: application to fetoscopy

Author(s): Marcel Tella-Amo, Loic Peter, Dzhoshkun I. Shakir, Jan Deprest, Danail Stoyanov, Juan Eugenio Iglesias, Tom Vercauteren, Sebastien Ourselin
Published in: Journal of Medical Imaging, Issue 5/02, 2018, Page(s) 1, ISSN 2329-4302
DOI: 10.1117/1.JMI.5.2.021217

High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas

Author(s): Z.M. Saygin, D. Kliemann, J.E. Iglesias, A.J.W. van der Kouwe, E. Boyd, M. Reuter, A. Stevens, K. Van Leemput, A. McKee, M.P. Frosch, B. Fischl, J.C. Augustinack
Published in: NeuroImage, Issue 155, 2017, Page(s) 370-382, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2017.04.046

Mid-space-independent deformable image registration

Author(s): Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert Rory Sabuncu, Bruce Fischl
Published in: NeuroImage, Issue 152, 2017, Page(s) 158-170, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2017.02.055

A magnetic resonance multi-atlas for the neonatal rabbit brain

Author(s): Sebastiano Ferraris, Johannes van der Merwe, Lennart Van Der Veeken, Ferran Prados, Juan-Eugenio Iglesias, Andrew Melbourne, Marco Lorenzi, Marc Modat, Willy Gsell, Jan Deprest, Tom Vercauteren
Published in: NeuroImage, Issue 179, 2018, Page(s) 187-198, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2018.06.029

Smaller hippocampal CA1 subfield volume in posttraumatic stress disorder


Published in: ISSN 1091-4269
DOI: 10.1002/da.22833

Primum non nocere: a call for balance when reporting on CTE

Author(s): William Stewart, Kieren Allinson, Safa Al-Sarraj, Corbin Bachmeier, Karen Barlow, Antonio Belli, Mark P Burns, Alan Carson, Fiona Crawford, Kristen Dams-O'Connor, Ramon Diaz-Arrastia, C Edward Dixon, Brian L Edlow, Scott Ferguson, Bruce Fischl, Rebecca D Folkerth, Steve Gentleman, Christopher C Giza, M Sean Grady, Adel Helmy, Mark Herceg, Janice L Holton, David Howell, Peter J Hutchinson, Diego Ia
Published in: The Lancet Neurology, Issue 18/3, 2019, Page(s) 231-233, ISSN 1474-4422
DOI: 10.1016/s1474-4422(19)30020-1

A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain

Author(s): Ignacio Arganda-Carreras, Tudor Manoliu, Nicolas Mazuras, Florian Schulze, Juan E. Iglesias, Katja Bühler, Arnim Jenett, François Rouyer, Philippe Andrey
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00013

Hippocampal Subfield Volumetry: Differential Pattern of Atrophy in Different Forms of Genetic Frontotemporal Dementia

Author(s): Martina Bocchetta, Juan Eugenio Iglesias, Marzia A. Scelsi, David M. Cash, M. Jorge Cardoso, Marc Modat, Andre Altmann, Sebastien Ourselin, Jason D. Warren, Jonathan D. Rohrer
Published in: Journal of Alzheimer's Disease, Issue 64/2, 2018, Page(s) 497-504, ISSN 1387-2877
DOI: 10.3233/JAD-180195

A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology

Author(s): Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, Andre van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso
Published in: NeuroImage, Issue 183, 2018, Page(s) 314-326, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2018.08.012

Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections

Author(s): Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed Lein, Bruce Fischl, Sebastien Ourselin
Published in: Medical Image Analysis, Issue 50, 2018, Page(s) 127-144, ISSN 1361-8415
DOI: 10.1016/j.media.2018.09.002

Globally Optimal Coupled Surfaces for Semi-automatic Segmentation of Medical Images

Author(s): Juan Eugenio Iglesias
Published in: International Conference on Information Processing in Medical Imaging, 2017, Page(s) 610-621
DOI: 10.1007/978-3-319-59050-9_48

Part-to-Whole Registration of Histology and MRI Using Shape Elements

Author(s): Jonas Pichat, Juan Eugenio Iglesias, Sotiris Nousias, Tarek Yousry
Published in: 2017 IEEE International Conference on Computer Vision Workshops (ICCVW), 2017, Page(s) 107-115
DOI: 10.1109/iccvw.2017.21

Retrospective head motion estimation in structural brain MRI with 3D CNNs

Author(s): Juan Eugenio Iglesias, Garikoitz Lerma-Usabiaga, Luis Garcia-Pereza-Herrera, S Martinez, Pedro Paz-Alonson MICCAI 2017314-322.
Published in: Proceedings of MICCAI, Issue 2, 2017, Page(s) 314-322

Technical note: probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking. Application to fetoscopy

Author(s): Marcel Tella-Amo, Loic Peter, Dzhoshkun I. Shakir, Jan Deprest, Danail Stoyanov, Juan E. Iglesias, Tom Vercauteren, Sebastien Ourselin
Published in: Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling, 2018, Page(s) 103
DOI: 10.1117/12.2319839

Hierarchical Joint Registration of Tissue Blocks With Soft Shape Constraints For Large-Scale Histology of The Human Brain

Author(s): M. Mancini, S. Crampsie, D.L. Thomas, Z. Jaunmuktane, J.L. Holton, J.E. Iglesias
Published in: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 2019, Page(s) 666-669
DOI: 10.1109/isbi.2019.8759396

Large-Scale Mammography CAD with Deformable Conv-Nets

Author(s): Stephen Morrell, Zbigniew Wojna, Can Son Khoo, Sebastien Ourselin, Juan Eugenio Iglesias
Published in: Image Analysis for Moving Organ, Breast, and Thoracic Images - Third International Workshop, RAMBO 2018, Fourth International Workshop, BIA 2018, and First International Workshop, TIA 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16 and 20, 2018, Proceedings, Issue 11040, 2018, Page(s) 64-72
DOI: 10.1007/978-3-030-00946-5_7

Model-Based Refinement of Nonlinear Registrations in 3D Histology Reconstruction

Author(s): Juan Eugenio Iglesias, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren
Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part II, Issue 11071, 2018, Page(s) 147-155
DOI: 10.1007/978-3-030-00934-2_17

A Probabilistic Model Combining Deep Learning and Multi-atlas Segmentation for Semi-automated Labelling of Histology

Author(s): Alessia Atzeni, Marnix Jansen, Sébastien Ourselin, Juan Eugenio Iglesias
Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part II, Issue 11071, 2018, Page(s) 219-227
DOI: 10.1007/978-3-030-00934-2_25

Template-Free Estimation of Intracranial Volume: A Preterm Birth Animal Model Study

Author(s): Juan Eugenio Iglesias, Sebastiano Ferraris, Marc Modat, Willy Gsell, Jan Deprest, Johannes L. van der Merwe, Tom Vercauteren
Published in: Fetal, Infant and Ophthalmic Medical Image Analysis, Issue 10554, 2017, Page(s) 3-13
DOI: 10.1007/978-3-319-67561-9_1

Joint Inference on Structural and Diffusion MRI for Sequence-Adaptive Bayesian Segmentation of Thalamic Nuclei with Probabilistic Atlases

Author(s): Juan Eugenio Iglesias, Koen Van Leemput, Polina Golland, Anastasia Yendiki
Published in: Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, June 2–7, 2019, Proceedings, Issue 11492, 2019, Page(s) 767-779
DOI: 10.1007/978-3-030-20351-1_60