Illuminating Functional Networks and Keystone Species in the Gut

Información del proyecto

FunKeyGut

Identificador del acuerdo de subvención: 714623

DOI

10.3030/714623

Proyecto cerrado

Fecha de la firma de la CE 28 Marzo 2017

Fecha de inicio 1 Abril 2017

Fecha de finalización 30 Septiembre 2022

Financiado con arreglo a

• EXCELLENT SCIENCE - European Research Council (ERC)

Coste total

€ 1 498 279,00

Aportación de la UE

€ 1 498 279,00

Coordinado por

UNIVERSITAT WIEN
Austria

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Publicaciones

Peer reviewed articles (29)

Conversion of Rutin, a Prevalent Dietary Flavonol, by the Human Gut Microbiota

Autores: Alessandra Riva, Ditta Kolimár, Andreas Spittler, Lukas Wisgrill, Craig W. Herbold, László Abrankó, David Berry
Publicado en: Frontiers in Microbiology, Edición 11, 2020, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2020.585428

Transparent soil microcosms for live-cell imaging and non-destructive stable isotope probing of soil microorganisms

Autores: Kriti Sharma, Márton Palatinszky, Georgi Nikolov, David Berry, Elizabeth A Shank
Publicado en: eLife, Edición 9, 2020, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.56275

Targeting Gut Bacteria Using Inulin-Conjugated Mesoporous Silica Nanoparticles

Autores: von Baeckmann C, Riva A, Guggenberger P, Kählig H, Han SW, Inan D, Del Favero G, Berry D, Kleitz F
Publicado en: Advanced Materials Interfaces, Edición 9:14, 2022, ISSN 2196-7350
Editor: Wiley
DOI: 10.1002/admi.202102558

Crypt residing bacteria and proximal colonic carcinogenesis in a mouse model of Lynch syndrome

Autores: Michaela Lang, Maximilian Baumgartner, Aleksandra Rożalska, Adrian Frick, Alessandra Riva, Michael Jarek, David Berry, Christoph Gasche
Publicado en: International Journal of Cancer, Edición 147/8, 2020, Página(s) 2316-2326, ISSN 0020-7136
Editor: John Wiley & Sons Inc.
DOI: 10.1002/ijc.33028

Lipid synthesis at the trophic base as the source for energy management to build complex structures

Autores: Schnorr SL, Berry D
Publicado en: Current Opinion in Biotechnology, Edición 09581669, 2022, Página(s) 364-373, ISSN 0958-1669
Editor: Elsevier BV
DOI: 10.1016/j.copbio.2021.09.014

Aberrant gut-microbiota-immune-brain axis development in premature neonates with brain damage

Autores: David Seki, Margareta Mayer, Bela Hausmann, Petra Pjevac, Vito Giordano, Katharina Goeral, Lukas Unterasinger, Katrin Klebermaß-Schrehof, Kim De Paepe, Tom Van de Wiele, Andreas Spittler, Gregor Kasprian, Benedikt Warth, Angelika Berger, David Berry, Lukas Wisgrill
Publicado en: Cell Host & Microbe, Edición 29/10, 2021, Página(s) 1558-1572.e6, ISSN 1931-3128
Editor: Cell Press
DOI: 10.1016/j.chom.2021.08.004

Persistence of the antagonistic effects of a natural mixture of Alternaria mycotoxins on the estrogen-like activity of human feces after anaerobic incubation

Autores: Crudo F, Aichinger G, Dellafiora L, Kiss E, Mihajlovic J, Del Favero G, Berry D, Dall'Asta C, Marko D
Publicado en: Toxicology Letters, Edición 03784274, 2022, Página(s) 88-99, ISSN 0378-4274
Editor: Elsevier BV
DOI: 10.1016/j.toxlet.2022.01.015

Individuality of the Extremely Premature Infant Gut Microbiota Is Driven by Ecological Drift

Autores: Seki D, Schauberger C, Hausmann B, Berger A, Wisgrill L, Berry D
Publicado en: mSystems, Edición 23795077, 2022, ISSN 2379-5077
Editor: American Society for Microbiology
DOI: 10.1128/msystems.00163-22

Single-cell stable isotope probing in microbial ecology

Autores: Alcolombri U, Pioli R, Stocker R, Berry D
Publicado en: ISME Communications, Edición 27306151, 2022, ISSN 2730-6151
Editor: Springer Nature
DOI: 10.1038/s43705-022-00142-3

Mucosal Biofilms Are an Endoscopic Feature of Irritable Bowel Syndrome and Ulcerative Colitis

Autores: Maximilian Baumgartner, Michaela Lang, Hunter Holley, Daniel Crepaz, Bela Hausmann, Petra Pjevac, Doris Moser, Felix Haller, Fabian Hof, Andrea Beer, Elisabeth Orgler, Adrian Frick, Vineeta Khare, Rayko Evstatiev, Susanne Strohmaier, Christian Primas, Werner Dolak, Thomas Köcher, Kristaps Klavins, Timo Rath, Markus F. Neurath, David Berry, Athanasios Makristathis, Markus Muttenthaler, Christoph G
Publicado en: Gastroenterology, Edición 161/4, 2021, Página(s) 1245-1256.e20, ISSN 0016-5085
Editor: W. B. Saunders Co., Ltd.
DOI: 10.1053/j.gastro.2021.06.024

Transkingdom interactions between Lactobacilli and hepatic mitochondria attenuate western diet-induced diabetes

Autores: Richard R. Rodrigues, Manoj Gurung, Zhipeng Li, Manuel García-Jaramillo, Renee Greer, Christopher Gaulke, Franziska Bauchinger, Hyekyoung You, Jacob W. Pederson, Stephany Vasquez-Perez, Kimberly D. White, Briana Frink, Benjamin Philmus, Donald B. Jump, Giorgio Trinchieri, David Berry, Thomas J. Sharpton, Amiran Dzutsev, Andrey Morgun, Natalia Shulzhenko
Publicado en: Nature Communications, Edición 12/1, 2021, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-020-20313-x

Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization

Autores: Fátima C. Pereira, Kenneth Wasmund, Iva Cobankovic, Nico Jehmlich, Craig W. Herbold, Kang Soo Lee, Barbara Sziranyi, Cornelia Vesely, Thomas Decker, Roman Stocker, Benedikt Warth, Martin von Bergen, Michael Wagner, David Berry
Publicado en: Nature Communications, Edición 11/1, 2020, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-020-18928-1

Impaired Mucosal Homeostasis in Short-Term Fiber Deprivation Is Due to Reduced Mucus Production Rather Than Overgrowth of Mucus-Degrading Bacteria

Autores: Overbeeke A, Lang M, Hausmann B, Watzka M, Nikolov G, Schwarz J, Kohl G, De Paepe K, Eislmayr K, Decker T, Richter A, Berry D
Publicado en: Nutrients, Edición 20726643, 2022, Página(s) 3802, ISSN 2072-6643
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/nu14183802

Next-generation biomonitoring of the early-lifechemical exposome in neonatal and infantdevelopment

Autores: Jamnik T, Flasch M, Braun D, Fareed Y, Wasinger D, Seki D, Berry D, Berger A, Wisgrill L, Warth B
Publicado en: Nature Communications, Edición 20411723, 2022, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-022-30204-y

A look beyond dietary (poly)phenols: The low molecular weight phenolic metabolites and their concentrations in human circulation

Autores: Carregosa D, Pinto C, Ávila-Gálvez MÁ, Bastos P, Berry D, Santos CN
Publicado en: Comprehensive Reviews in Food Science and Food Safety, Edición 21 (5), 2022, Página(s) 3931-3962, ISSN 1541-4337
Editor: International Life Sciences Institute
DOI: 10.1111/1541-4337.13006

Microbial nitrogen limitation in the mammalian large intestine

Autores: Aspen T. Reese, Fátima C. Pereira, Arno Schintlmeister, David Berry, Michael Wagner, Laura P. Hale, Anchi Wu, Sharon Jiang, Heather K. Durand, Xiyou Zhou, Richard T. Premont, Anna Mae Diehl, Thomas M. O’Connell, Susan C. Alberts, Tyler R. Kartzinel, Robert M. Pringle, Robert R. Dunn, Justin P. Wright, Lawrence A. David
Publicado en: Nature Microbiology, 2018, ISSN 2058-5276
Editor: Nature Publishing Group
DOI: 10.1038/s41564-018-0267-7

Vibrational Spectroscopy for Imaging Single Microbial Cells in Complex Biological Samples

Autores: Jesse P. Harrison, David Berry
Publicado en: Frontiers in Microbiology, Edición 8, 2017, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2017.00675

Long-distance electron transport in individual, living cable bacteria

Autores: Jesper T. Bjerg, Henricus T. S. Boschker, Steffen Larsen, David Berry, Markus Schmid, Diego Millo, Paula Tataru, Filip J. R. Meysman, Michael Wagner, Lars Peter Nielsen, Andreas Schramm
Publicado en: Proceedings of the National Academy of Sciences, Edición 115/22, 2018, Página(s) 5786-5791, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.1800367115

An automated Raman-based platform for the sorting of live cells by functional properties

Autores: Kang Soo Lee, Márton Palatinszky, Fátima C. Pereira, Jen Nguyen, Vicente I. Fernandez, Anna J. Mueller, Filippo Menolascina, Holger Daims, David Berry, Michael Wagner, Roman Stocker
Publicado en: Nature Microbiology, Edición 4/6, 2019, Página(s) 1035-1048, ISSN 2058-5276
Editor: Nature Publishing Grouip
DOI: 10.1038/s41564-019-0394-9

Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis

Autores: Simone Herp, Sandrine Brugiroux, Debora Garzetti, Diana Ring, Lara M. Jochum, Markus Beutler, Claudia Eberl, Saib Hussain, Steffi Walter, Roman G. Gerlach, Hans J. Ruscheweyh, Daniel Huson, Mikael E. Sellin, Emma Slack, Buck Hanson, Alexander Loy, John F. Baines, Philipp Rausch, Marijana Basic, André Bleich, David Berry, Bärbel Stecher
Publicado en: Cell Host & Microbe, Edición 25/5, 2019, Página(s) 681-694.e8, ISSN 1931-3128
Editor: Cell Press
DOI: 10.1016/j.chom.2019.03.004

Berry-Enriched Diet in Salt-Sensitive Hypertensive Rats: Metabolic Fate of (Poly)Phenols and the Role of Gut Microbiota

Autores: Gomes, Oudot, Macià, Foito, Carregosa, Stewart, Van de Wiele, Berry, Motilva, Brenner, dos Santos
Publicado en: Nutrients, Edición 11/11, 2019, Página(s) 2634, ISSN 2072-6643
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/nu11112634

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

Autores: Alessandra Riva, Orest Kuzyk, Erica Forsberg, Gary Siuzdak, Carina Pfann, Craig Herbold, Holger Daims, Alexander Loy, Benedikt Warth, David Berry
Publicado en: Nature Communications, Edición 10/1, 2019, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-019-12413-0

Stable-Isotope Probing of Human and Animal Microbiome Function

Autores: David Berry, Alexander Loy
Publicado en: Trends in Microbiology, Edición 26/12, 2018, Página(s) 999-1007, ISSN 0966-842X
Editor: Elsevier BV
DOI: 10.1016/j.tim.2018.06.004

Elucidating the role of the gut microbiota in the physiological effects of dietary fiber

Autores: Deehan EC, Zhang Z, Riva A, Armet AM, Perez-Muñoz ME, Nguyen NK, Krysa JA, Seethaler B, Zhao YY, Cole J, Li F, Hausmann B, Spittler A, Nazare JA, Delzenne NM, Curtis JM, Wismer WV, Proctor SD, Bakal JA, Bischoff SC, Knights D, Field CJ, Berry D, Prado CM, Walter J
Publicado en: Microbiome, Edición 13;10(1), 2022, Página(s) 77, ISSN 2049-2618
Editor: Springer Nature
DOI: 10.1186/s40168-022-01248-5

Gut microbiota and undigested food constituents modify toxin composition and suppress the genotoxicity of a naturally occurring mixture of Alternaria toxins in vitro

Autores: Francesco Crudo, Georg Aichinger, Jovana Mihajlovic, Luca Dellafiora, Elisabeth Varga, Hannes Puntscher, Benedikt Warth, Chiara Dall’Asta, David Berry, Doris Marko
Publicado en: Archives of Toxicology, Edición 94/10, 2020, Página(s) 3541-3552, ISSN 0340-5761
Editor: Springer Verlag
DOI: 10.1007/s00204-020-02831-1

Early-life chemical exposome and gut microbiome development: African research perspectives within a global environmental health context

Autores: Ayeni KI, Berry D, Wisgrill L, Warth B, Ezekiel CN
Publicado en: Trends in Microbiology, Edición 18784380, 2022, Página(s) 1084-1100, ISSN 1878-4380
Editor: Cell Press
DOI: 10.1016/j.tim.2022.05.008

Ecological Processes Shaping Microbiomes of Extremely Low Birthweight Infants

Autores: Zioutis C, Seki D, Bauchinger F, Herbold C, Berger A, Wisgrill L, Berry D
Publicado en: Front. Microbiol., Edición 1664302X, 2022, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2022.812136

In vitro interactions of Alternaria mycotoxins, an emerging class of food contaminants, with the gut microbiota: a bidirectional relationship

Autores: Francesco Crudo, Georg Aichinger, Jovana Mihajlovic, Elisabeth Varga, Luca Dellafiora, Benedikt Warth, Chiara Dall’Asta, David Berry, Doris Marko
Publicado en: Archives of Toxicology, Edición 95/7, 2021, Página(s) 2533-2549, ISSN 0340-5761
Editor: Springer Verlag
DOI: 10.1007/s00204-021-03043-x

Combined hormonal contraceptives are associated with minor changes in composition and diversity in gut microbiota of healthy women

Autores: Jovana Mihajlovic, Michael Leutner, Bela Hausmann, Gudrun Kohl, Jasmin Schwarz, Hannah Röver, Nina Stimakovits, Peter Wolf, Katharina Maruszczak, Magdalena Bastian, Alexandra Kautzky‐Willer, David Berry
Publicado en: Environmental Microbiology, Edición 23/6, 2021, Página(s) 3037-3047, ISSN 1462-2912
Editor: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.15517