Decoding the Epigenomic Regulatory Code by the Use of Single Cell Technologies

Project Information

SC-EpiCode

Grant agreement ID: 715260

DOI

10.3030/715260

Project closed

EC signature date 26 September 2017

Start date 1 October 2017

End date 31 March 2023

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 500 000,00

EU contribution

€ 1 500 000,00

Coordinated by

THE HEBREW UNIVERSITY OF JERUSALEM
Israel

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Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (7)

Transcription Factor Binding in Embryonic Stem Cells Is Constrained by DNA Sequence Repeat Symmetry.

Author(s): Matan Goldshtein; Meir Mellul; Gai Deutch; Masahiko Imashimizu; Koh Takeuchi; Eran Meshorer; Oren Ram; David B. Lukatsky
Published in: Biophysical journal, Issue 1, 2020, ISSN 0006-3495
Publisher: Biophysical Society
DOI: 10.1016/j.bpj.2020.02.009

Tropomyosin mediates matrix-directed differentiation of distinctive subpopulations of primary mesenchymal stem cells

Author(s): Brielle SS, Bavli DPD, Sun XS, Kozulin CS, Motzik APD, Kan-Tor YS, Avni BCoPI, Ram O*PI, Buxboim A*PI
Published in: PNAS, 2021, ISSN 1091-6490
Publisher: PNAS

DNA methylation patterns expose variations in enhancer-chromatin modifications during embryonic stem cell differentiation

Author(s): Adi Alajem; Hava Roth; Sofia Ratgauzer; Danny Bavli; Alex Motzik; Shlomtzion Lahav; Itay Peled; Oren Ram
Published in: PLoS Genetics, Issue 1, 2021, ISSN 1553-7404
Publisher: San Francisco, CA Public Library of Science ©2005
DOI: 10.1371/journal.pgen.1009498

Esrrb is a cell-cycle-dependent associated factor balancing pluripotency and XEN differentiation

Author(s): Sapir Herchcovici Levy, Sharon Feldman Cohen, Lee Arnon, Shlomtzion Lahav, Muhammad Awawdy, Adi Alajem, Danny Bavli, Xue Sun, Yosef Buganim, Oren Ram
Published in: Stem Cell Reports, 2022, ISSN 2213-6711
Publisher: Cell Press
DOI: 10.1016/j.stemcr.2022.04.016

DNA repeats apply negative design on gene expression in embryonic stem cells

Author(s): Meir Mellul*S, Shlomtzion Lahav*S, David B. LukatskyPI, Oren RamPI
Published in: Biophys J, 2022, ISSN 1542-0086
Publisher: CellPress

CloneSeq - single-cell clonal 3D culture and analysis protocol. STAR protocols

Author(s): Sun X*S, Bavli D*PD, Kozulin C*S, Motzik APD, Buxboim ACoPI, Ram O*PI
Published in: STAR protocols, 2021, ISSN 2666-1667
Publisher: New York: Cell Press Elsevier Inc

CloneSeq: A Highly Sensitive Single-cell Analysis Platform for Comprehensive Characterization of Cells from 3D Culture

Author(s): Danny Bavli; Xue Sun; Chen Kozulin; Ennis D; Alex Motzik; Alva Biran; Shlomi Brielle; Adi Alajem; Eran Meshorer; Amnon Buxboim; Oren Ram
Published in: Developmental Cell, Issue 3, 2021, ISSN 1878-1551
Publisher: Cell
DOI: 10.1101/2020.11.24.395541