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Quantitative understanding of target recognition on DNA based on directional zipping processes

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Publications

Primed CRISPR adaptation in Escherichia coli cells does not depend on conformational changes in the Cascade effector complex detected in Vitro

Author(s): Andrey Krivoy, Marius Rutkauskas, Konstantin Kuznedelov, Olga Musharova, Christophe Rouillon, Konstantin Severinov, Ralf Seidel
Published in: Nucleic Acids Research, Issue 46/8, 2018, Page(s) 4087-4098, ISSN 0305-1048
DOI: 10.1093/nar/gky219

Competing interaction partners modulate the activity of Sgs1 helicase during DNA end resection

Author(s): Kristina Kasaciunaite, Fergus Fettes, Maryna Levikova, Peter Daldrop, Roopesh Anand, Petr Cejka, Ralf Seidel
Published in: The EMBO Journal, Issue 38/13, 2019, ISSN 0261-4189
DOI: 10.15252/embj.2019101516

Decision-Making in Cascade Complexes Harboring crRNAs of Altered Length

Author(s): Inga Songailiene, Marius Rutkauskas, Tomas Sinkunas, Elena Manakova, Sabine Wittig, Carla Schmidt, Virginijus Siksnys, Ralf Seidel
Published in: Cell Reports, Issue 28/12, 2019, Page(s) 3157-3166.e4, ISSN 2211-1247
DOI: 10.1016/j.celrep.2019.08.033

CtIP promotes the motor activity of DNA2 to accelerate long-range DNA end resection

Author(s): Ilaria Ceppi, Sean M. Howard, Kristina Kasaciunaite, Cosimo Pinto, Roopesh Anand, Ralf Seidel, Petr Cejka
Published in: Proceedings of the National Academy of Sciences, Issue 117/16, 2020, Page(s) 8859-8869, ISSN 0027-8424
DOI: 10.1073/pnas.2001165117

Modeling DNA-Strand Displacement Reactions in the Presence of Base-Pair Mismatches

Author(s): Patrick Irmisch, Thomas E. Ouldridge, Ralf Seidel
Published in: Journal of the American Chemical Society, 2020, ISSN 0002-7863
DOI: 10.1021/jacs.0c03105

Phosphorylation of the RecQ Helicase Sgs1/BLM Controls Its DNA Unwinding Activity during Meiosis and Mitosis

Author(s): Rokas Grigaitis, Lepakshi Ranjha, Philipp Wild, Kristina Kasaciunaite, Ilaria Ceppi, Vera Kissling, Adrian Henggeler, Aitor Susperregui, Matthias Peter, Ralf Seidel, Petr Cejka, Joao Matos
Published in: Developmental Cell, Issue 53/6, 2020, Page(s) 706-723.e5, ISSN 1534-5807
DOI: 10.1016/j.devcel.2020.05.016