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Integration and analysis of heterogeneous big data for precision medicine and suggested treatments for different types of patients

Deliverables

Initial Platform Prototype

This deliverable will be the first prototype of the IASIS platform.

Clinical notes & image analysis v1.0

This deliverable will contain the first prototypes of the text and image analysis components.

Predictive modelling v1.0

This deliverable will contain the first prototype of the predictive modelling module.

Genomic semantic indexing v1.0

This deliverable will contain the first version of semantic indexing module and indexed genomic data.

EHR semantic indexing v1.0

This deliverable will contain the first version of the semantic indexing module and indexed EHR.

Open data semantic indexing v1.0

This deliverable will contain the first version of semantic indexing module and the indexed open data.

Genomic data analysis v1.0

This deliverable will contain the first version of the genomic analysis module.

Harvesting services for genomic data v1.0

This deliverable will contain the first version of data harvesting component that will fetch the genomic data.

Open data analysis v1.0

This deliverable will contain the first version of the open data analysis module.

High-Level Analysis Services v1.0

This deliverable will include the first prototype of the high-level analysis services developed in task T5.6.

Harvesting services for open data v1.0

This deliverable will contain the first version of data harvesting module that will fetch the open data.

Interoperability analysis of biomedical data

This deliverable will report the interoperability analysis results.

Dissemination & Communication Report V1.0

Reporting on accomplished dissemination activities and planned activities for the first reporting period.

Data Management Plan

This deliverable will outline the different data management services to be implemented by the project.

Definition of System Architecture

This is the deliverable that will detail the design of the system architecture including the user interfaces and technical specifications.

Communication Plan

Document describing the overall strategy for dissemination and communications during the project.

IASIS Conceptual Schema and Integration Rules v1.0

The first version of the IASIS conceptual schema and the integration rules will be reported in this deliverable.

Project Website

Project website for the public, scientists, and with a private area for document sharing.

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Publications

Why Reinvent the Wheel- Let's Build Question Answering Systems Together.

Author(s): Kuldeep Singh, Arun Sethupat Radhakrishna, Andreas Both, Saeedeh Shekarpour, Ioanna Lytra, Ricardo Usbeck, Akhilesh Vyas, Akmal Khikmatullaev, Dharmen Punjani, Christoph Lange, Maria-Esther Vidal, Jens Lehmann and Sören Auer.
Published in: 2018

ESWC 2018 Project Networking Track Title: iASiS: Big Data for Supporting Precision Medicine and Public Health Policy-Making Description: This extended abstract describes the objectives of the iASiS project, the main characteristics of the iASiS knowledge graph and the components of the iASiS framework. Resources that will be made available to the Semantic Web community are described as well.

Author(s): Maria-Esther Vidal
Published in: 2018

IASIS and BigMedilytics: Towards personalized medicine in Europe

Author(s): Ernestina Menasalvas Ruiz, Alejandro Rodríguez-González, Consuelo Gonzalo Martín, Massimiliano Zanin, Juan Manuel Tuñas, Mariano Provencio, Maria Torrente, Fabio Franco, Virginia Calvo, Beatriz Nuñez
Published in: 2018

Lung Cancer Concept Annotation from Spanish Clinical Narratives

Author(s): Marjan Najafabadipour, Juan Manuel Tuñas, Alejandro Rodríguez-González, Ernestina Menasalvas
Published in: 2018

HARE: An Engine for Enhancing Answer Completeness of SPARQL Queries via Crowdsourcing.

Author(s): Maribel Acosta, Elena Simperl, Fabian Flöck and Maria Esther Vidal.
Published in: 2018

Automatic Detection of Linguistic indicators as a means of early detection of Alzheimer’s and of related dementias: A Computational Linguistics analysis

Author(s): Rentoumi Vassiliki, Dimitra Arfani, Katerina Fragkopoulou, Eva Danasi, Spyridoula Varlokosta, Spyros Papadatos and George Paliouras
Published in: 2017

Unveiling Scholarly Communities over Knowledge Graphs.

Author(s): Sahar Vahdat, Guillermo Palma,Rahul Jyoti Nath1, Christoph Lange, SörenAuer, and Maria-Esther Vidal
Published in: 2018

Big Data for Supporting Precision Medicine in Lung Cancer Patient.

Author(s): Maria Torrente, Fernando FrancoErnestina Mensalvas, , Alejandro Rodriguez-Gonzalez, Virginia Calvo, Maria Auxiliadora Brenes, George Paliouras, Mariano Provencio-Pulla
Published in: 2018

BOUNCER: Privacy-aware Query Processing Over Federations of RDF Dataset Description: This paper describes BOUNCER, a framework for enforcing data privacy and access control regulations. BOUNCER relies on novel query execution strategy to ensure that data access regulations are satisfied during query execution.

Author(s): Kemele M. Endris, Zuhair Almhithawi, Ioanna Lytra, Maria-Esther Vidal, Sören Auer
Published in: 2018

Evaluating Wikipedia as a source of information for disease understanding

Author(s): Eduardo P. García del Valle, Gerardo Lagunes García, Lucia Prieto Santamaría, Massimiliano Zanin, Alejandro Rodríguez González, Ernestina Menasalvas Ruiz
Published in: 2018

AAIC '18 - Alzheimer's Association International Conference iASiS: Big Data for Precision Medicine. Automatic Detection of Linguistic Indicators as a Means of Early Prediction of Alzheimer's and of Related Dementias

Author(s): Vassiliki Rentoumi, George Paliouras, Anastasia Krithara, Peter Garrard, and Anastasios Nentidis
Published in: 2018

EU Project Description - iASiS: Big Data for Supporting Precision Medicine and Public Health Policy-Making

Author(s): Maria-Esther Vidal
Published in: Data Integration in the Life Sciences 2018, 2018

iASiS: Big Data for Supporting Precision Medicine and Public Health Policy-Making

Author(s): Anastasia Krithara, George Paliouras, Anna Triantafillou, Maria-Esther Vidal, Soren Auer, Ernestina Menasalvas, Mariano Provencio Pulla, Maria Torrente, Peter Garrard, Alison Evans, Roderic Guigo, Louiqa Raschid
Published in: 2017

Semantic integration of disease-specific knowledge

Author(s): Anastasios Nentidis, Konstantinos Bougiatiotis, Anastasia Krithara and Georgios Paliouras
Published in: 2018

GARUM: A Semantic Similarity Measure Based on Machine Learning and Entity Characteristics Description: This paper presents GARUM, a semantic similarity measure that resorts to machine learning methods for learning the most suitable characteristics to consider during the computation of the relatedness of two entities. Knowledge graphs are used to represent the entities, and semantics encoded in the

Author(s): Ignacio Traverso-Ribon, Maria-Esther Vidal
Published in: 2018

Aristotelieio Glosologia - Automatic extraction of linguistic features in Alzheimer’s disease: A computational linguistics approach

Author(s): Rentoumi Vassiliki, Dimitra Arfani, Katerina Fragkopoulou, Spyridoula Varlokosta, and George Paliouras
Published in: 2018

Synthesizing Knowledge Graphs from web sources with the MINTE+ framework

Author(s): Diego Collarana, Michael Galkin, Christoph Lange, Simon Scerri, Sören Auer and Maria-Esther Vidal
Published in: 2018

Automatic detection of linguistic indicators as a means of early prediction of Alzheimer’s Disease

Author(s): Rentoumi Vassiliki, Dimitra Arfani, Katerina Fragkopoulou, Spyridoula Varlokosta, and George Paliouras,
Published in: 2018

Automatic Recording and Analysis of Somniloquy through the use of Mobile Devices to Support the Diagnosis of Psychological Pathologies

Author(s): Virginia Aparicio-Paniagua, Jorge Pérez-Muñoz, Alejandro Rodríguez-González, Ángel García-Pedrero, Juan Miguel Gomez-Berbis, Consuelo Gonzalo-Martin, Ernestina Menasalvas-Ruiz, Giner Alor-Hernández
Published in: Issue 24-27 October 2017, 2017, Page(s) 169-180
DOI: 10.1007/978-3-319-67283-0_13

Profiling Lung Cancer Patients Using Electronic Health Records

Author(s): Ernestina Menasalvas Ruiz, Juan Manuel Tuñas, Guzmán Bermejo, Consuelo Gonzalo Martín, Alejandro Rodríguez-González, Massimiliano Zanin, Cristina González de Pedro, Marta Méndez, Olga Zaretskaia, Jesús Rey, Consuelo Parejo, Juan Luis Cruz Bermudez, Mariano Provencio
Published in: Journal of Medical Systems, Issue 42/7, 2018, ISSN 0148-5598
DOI: 10.1007/s10916-018-0975-9

Supervoxels-Based Histon as a New Alzheimer’s Disease Imaging Biomarker

Author(s): César Toro, Consuelo Gonzalo-Martín, Angel García-Pedrero, Ernestina Menasalvas Ruiz
Published in: Sensors, Issue 18/6, 2018, Page(s) 1752, ISSN 1424-8220
DOI: 10.3390/s18061752

Querying Interlinked Data by Bridging RDF Molecule Templates

Author(s): Kemele M. Endris, Mikhail Galkin, Ioanna Lytra, Mohamed Mami, Maria-Esther Vidal, Sören Auer.
Published in: 2018