Integration and analysis of heterogeneous big data for precision medicine and suggested treatments for different types of patients

Leistungen

Dissemination & Communication Report V2.0

Final version of the report on accomplished dissemination activities and planned activities.

Training Activities Report

Reporting on accomplished training activities.

IASIS Conceptual Schema and Integration Rules v2.0

The final version of the IASIS conceptual schema and the integration rules will be reported in this deliverable.

Interoperability analysis of biomedical data

This deliverable will report the interoperability analysis results.

Dissemination & Communication Report V1.0

Reporting on accomplished dissemination activities and planned activities for the first reporting period.

Data Management Plan

This deliverable will outline the different data management services to be implemented by the project.

Definition of System Architecture

This is the deliverable that will detail the design of the system architecture including the user interfaces and technical specifications.

Communication Plan

Document describing the overall strategy for dissemination and communications during the project.

IASIS Conceptual Schema and Integration Rules v1.0

The first version of the IASIS conceptual schema and the integration rules will be reported in this deliverable.

Initial Platform Prototype

This deliverable will be the first prototype of the IASIS platform.

Clinical notes & image analysis v1.0

This deliverable will contain the first prototypes of the text and image analysis components.

Predictive modelling v2.0

This deliverable will contain the first prototype of the predictive modelling module.

Harvesting services for open data v2.0

This deliverable will contain the final version of data harvesting module that will fetch the open data.

Predictive modelling v1.0

This deliverable will contain the first prototype of the predictive modelling module.

EHR semantic indexing v2.0

This deliverable will contain the final version of the semantic indexing module and indexed EHR.

High-Level Analysis Services v2.0

This deliverable will include the final prototype of the high-level analysis services developed in task T5.6.

Genomic semantic indexing v1.0

This deliverable will contain the first version of semantic indexing module and indexed genomic data.

Harvesting services for clinical data v2.0

This deliverable will contain the final version of the data harvesting components that will fetch the EHR data.

EHR semantic indexing v1.0

This deliverable will contain the first version of the semantic indexing module and indexed EHR.

Open data semantic indexing v1.0

This deliverable will contain the first version of semantic indexing module and the indexed open data.

Genomic semantic indexing v2.0

This deliverable will contain the final version of semantic indexing module and indexed genomic data.

Genomic data analysis v1.0

This deliverable will contain the first version of the genomic analysis module.

Clinical notes & image analysis v2.0

This deliverable will contain the final prototypes of the text and image analysis components.

Open data semantic indexing v2.0

This deliverable will contain the final version of semantic indexing module and the indexed open data.

Data Management Services

In this deliverable, the prototype of the data management services will be made available.

Final Platform Prototype

This deliverable will be the final prototype of the IASIS platform.

Genomic data analysis v2.0

This deliverable will contain the final version of the genomic analysis module.

Harvesting services for genomic data v1.0

This deliverable will contain the first version of data harvesting component that will fetch the genomic data.

Open data analysis v1.0

This deliverable will contain the first version of the open data analysis module.

Open data analysis v2.0

This deliverable will contain the final version of the open data analysis module.

High-Level Analysis Services v1.0

This deliverable will include the first prototype of the high-level analysis services developed in task T5.6.

Harvesting services for genomic data v2.0

This deliverable will contain the final version of data harvesting component that will fetch the genomic data.

Harvesting services for open data v1.0

This deliverable will contain the first version of data harvesting module that will fetch the open data.

Project Website

Project website for the public, scientists, and with a private area for document sharing.

Veröffentlichungen

DISNET: a framework for extracting phenotypic disease information from public sources

Autoren: Gerardo Lagunes-García, Alejandro Rodríguez-González, Lucía Prieto-Santamaría, Eduardo P. García del Valle, Massimiliano Zanin, Ernestina Menasalvas-Ruiz
Veröffentlicht in: PeerJ, Ausgabe 8, 2020, Seite(n) e8580, ISSN 2167-8359
Herausgeber: PeerJ
DOI: 10.7717/peerj.8580

RNAct: Protein–RNA interaction predictions for model organisms with supporting experimental data

Autoren: Benjamin Lang, Alexandros Armaos, Gian G Tartaglia
Veröffentlicht in: Nucleic Acids Research, Ausgabe 47/D1, 2018, Seite(n) D601-D606, ISSN 0305-1048
Herausgeber: Oxford University Press
DOI: 10.1093/nar/gky967

Compacting frequent star patterns in RDF graphs

Autoren: Farah Karim, Maria-Esther Vidal, Sören Auer
Veröffentlicht in: Journal of Intelligent Information Systems, 2020, ISSN 0925-9902
Herausgeber: Kluwer Academic Publishers
DOI: 10.1007/s10844-020-00595-9

Transforming Heterogeneous Data into Knowledge for Personalized Treatments—A Use Case

Autoren: Maria-Esther Vidal, Kemele M. Endris, Samaneh Jazashoori, Ahmad Sakor, Ariam Rivas
Veröffentlicht in: Datenbank-Spektrum, Ausgabe 19/2, 2019, Seite(n) 95-106, ISSN 1618-2162
Herausgeber: Springer
DOI: 10.1007/s13222-019-00312-z

SEOM clinical guidelines for the treatment of small-cell lung cancer (SCLC) (2019)

Autoren: M. Dómine, T. Moran, D. Isla, J. L. Martí, I. Sullivan, M. Provencio, M. E. Olmedo, S. Ponce, A. Blasco, M. Cobo
Veröffentlicht in: Clinical and Translational Oncology, Ausgabe 22/2, 2020, Seite(n) 245-255, ISSN 1699-048X
Herausgeber: Doyma
DOI: 10.1007/s12094-020-02295-w

Profiling Lung Cancer Patients Using Electronic Health Records

Autoren: Ernestina Menasalvas Ruiz, Juan Manuel Tuñas, Guzmán Bermejo, Consuelo Gonzalo Martín, Alejandro Rodríguez-González, Massimiliano Zanin, Cristina González de Pedro, Marta Méndez, Olga Zaretskaia, Jesús Rey, Consuelo Parejo, Juan Luis Cruz Bermudez, Mariano Provencio
Veröffentlicht in: Journal of Medical Systems, Ausgabe 42/7, 2018, ISSN 0148-5598
Herausgeber: Kluwer Academic/Plenum Publishers
DOI: 10.1007/s10916-018-0975-9

Supervoxels-Based Histon as a New Alzheimer’s Disease Imaging Biomarker

Autoren: César Toro, Consuelo Gonzalo-Martín, Angel García-Pedrero, Ernestina Menasalvas Ruiz
Veröffentlicht in: Sensors, Ausgabe 18/6, 2018, Seite(n) 1752, ISSN 1424-8220
Herausgeber: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/s18061752

Towards a Multi-way Similarity Join Operator

Autoren: Mikhail Galkin, Maria-Esther Vidal, Sören Auer
Veröffentlicht in: New Trends in Databases and Information Systems, Ausgabe 767, 2017, Seite(n) 267-274, ISBN 978-3-319-67161-1
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-319-67162-8_26

PURE: A Privacy Aware Rule-Based Framework over Knowledge Graphs

Autoren: Marlene Goncalves, Maria-Esther Vidal, Kemele M. Endris
Veröffentlicht in: Database and Expert Systems Applications - 30th International Conference, DEXA 2019, Linz, Austria, August 26–29, 2019, Proceedings, Part I, Ausgabe 11706, 2019, Seite(n) 205-214, ISBN 978-3-030-27614-0
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-27615-7_15

SJoin: A Semantic Join Operator to Integrate Heterogeneous RDF Graphs

Autoren: Mikhail Galkin, Diego Collarana, Ignacio Traverso-Ribón, Maria-Esther Vidal, Sören Auer
Veröffentlicht in: Database and Expert Systems Applications, Ausgabe 10438, 2017, Seite(n) 206-221, ISBN 978-3-319-64467-7
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-319-64468-4_16

A Knowledge-Driven Pipeline for Transforming Big Data into Actionable Knowledge

Autoren: Maria-Esther Vidal, Kemele M. Endris, Samaneh Jozashoori, Guillermo Palma
Veröffentlicht in: Data Integration in the Life Sciences - 13th International Conference, DILS 2018, Hannover, Germany, November 20-21, 2018, Proceedings, Ausgabe 11371, 2019, Seite(n) 44-49, ISBN 978-3-030-06015-2
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-06016-9_4

Querying Interlinked Data by Bridging RDF Molecule Templates

Autoren: Kemele M. Endris, Mikhail Galkin, Ioanna Lytra, Mohamed Nadjib Mami, Maria-Esther Vidal, Sören Auer
Veröffentlicht in: Transactions on Large-Scale Data- and Knowledge-Centered Systems XXXIX - Special Ausgabe on Database- and Expert-Systems Applications, Ausgabe 11310, 2018, Seite(n) 1-42, ISBN 978-3-662-58414-9
Herausgeber: Springer Berlin Heidelberg
DOI: 10.1007/978-3-662-58415-6_1

MateTee: A Semantic Similarity Metric Based on Translation Embeddings for Knowledge Graphs

Autoren: Camilo Morales, Diego Collarana, Maria-Esther Vidal, Sören Auer
Veröffentlicht in: Web Engineering, Ausgabe 10360, 2017, Seite(n) 246-263, ISBN 978-3-319-60130-4
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-319-60131-1_14

MULDER: Querying the Linked Data Web by Bridging RDF Molecule Templates

Autoren: Kemele M. Endris, Mikhail Galkin, Ioanna Lytra, Mohamed Nadjib Mami, Maria-Esther Vidal, Sören Auer
Veröffentlicht in: Database and Expert Systems Applications, Ausgabe 10438, 2017, Seite(n) 3-18, ISBN 978-3-319-64467-7
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-319-64468-4_1

COMET: A Contextualized Molecule-Based Matching Technique

Autoren: Mayesha Tasnim, Diego Collarana, Damien Graux, Mikhail Galkin, Maria-Esther Vidal
Veröffentlicht in: Database and Expert Systems Applications - 30th International Conference, DEXA 2019, Linz, Austria, August 26–29, 2019, Proceedings, Part I, Ausgabe 11706, 2019, Seite(n) 175-185, ISBN 978-3-030-27614-0
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-27615-7_13

What Are the Parameters that Affect the Construction of a Knowledge Graph?

Autoren: David Chaves-Fraga, Kemele M. Endris, Enrique Iglesias, Oscar Corcho, Maria-Esther Vidal
Veröffentlicht in: On the Move to Meaningful Internet Systems: OTM 2019 Conferences - Confederated International Conferences: CoopIS, ODBASE, C&TC 2019, Rhodes, Greece, October 21–25, 2019, Proceedings, Ausgabe 11877, 2019, Seite(n) 695-713, ISBN 978-3-030-33245-7
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-33246-4_43

Lung Cancer Concept Annotation from Spanish Clinical Narratives

Autoren: Marjan Najafabadipour, Juan Manuel Tuñas, Alejandro Rodríguez-González, Ernestina Menasalvas
Veröffentlicht in: Data Integration in the Life Sciences - 13th International Conference, DILS 2018, Hannover, Germany, November 20-21, 2018, Proceedings, Ausgabe 11371, 2019, Seite(n) 153-163, ISBN 978-3-030-06015-2
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-06016-9_15

Ontario: Federated Query Processing Against a Semantic Data Lake

Autoren: Kemele M. Endris, Philipp D. Rohde, Maria-Esther Vidal, Sören Auer
Veröffentlicht in: Database and Expert Systems Applications - 30th International Conference, DEXA 2019, Linz, Austria, August 26–29, 2019, Proceedings, Part I, Ausgabe 11706, 2019, Seite(n) 379-395, ISBN 978-3-030-27614-0
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-27615-7_29

MapSDI: A Scaled-Up Semantic Data Integration Framework for Knowledge Graph Creation

Autoren: Samaneh Jozashoori, Maria-Esther Vidal
Veröffentlicht in: On the Move to Meaningful Internet Systems: OTM 2019 Conferences - Confederated International Conferences: CoopIS, ODBASE, C&TC 2019, Rhodes, Greece, October 21–25, 2019, Proceedings, Ausgabe 11877, 2019, Seite(n) 58-75, ISBN 978-3-030-33245-7
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-33246-4_4

Interaction Network Analysis Using Semantic Similarity Based on Translation Embeddings

Autoren: Awais Manzoor Bajwa, Diego Collarana, Maria-Esther Vidal
Veröffentlicht in: Semantic Systems. The Power of AI and Knowledge Graphs - 15th International Conference, SEMANTiCS 2019, Karlsruhe, Germany, September 9–12, 2019, Proceedings, Ausgabe 11702, 2019, Seite(n) 249-255, ISBN 978-3-030-33219-8
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-33220-4_18

Semantic Data Integration of Big Biomedical Data for Supporting Personalised Medicine

Autoren: Maria-Esther Vidal, Kemele M. Endris, Samaneh Jozashoori, Farah Karim, Guillermo Palma
Veröffentlicht in: Current Trends in Semantic Web Technologies: Theory and Practice, Ausgabe 815, 2019, Seite(n) 25-56, ISBN 978-3-030-06148-7
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-06149-4_2

When humans and machines collaborate - cross-lingual label editing in wikidata

Autoren: Lucie-Aimée Kaffee, Kemele M. Endris, Elena Simperl
Veröffentlicht in: Proceedings of the 15th International Symposium on Open Collaboration, 2019, Seite(n) 1-9, ISBN 9781450363198
Herausgeber: ACM
DOI: 10.1145/3306446.3340826

Wikipedia Disease Articles: An Analysis of their Content and Evolution

Autoren: García, Gerardo Lagunes; Santamaría, Lucia Prieto; Valle, Eduardo P. García Del; Zanin, Massimiliano; Ruiz, Ernestina Menasalvas; González, Alejandro Rodríguez
Veröffentlicht in: CBMS, Ausgabe 4, 2018
Herausgeber: ACM
DOI: 10.5281/zenodo.1469699

A data-driven approach for analyzing healthcare services extracted from clinical records

Autoren: Scurti, Manuel; Ruiz, Ernestina Menasalvas; Serodio, Maria Esther Vidal; Torrente, Maria; Vogiatzis, Dimitrios; Paliouras, George; Provencio, Mariano; González, Alejandro Rodríguez
Veröffentlicht in: Ausgabe 3, 2020
Herausgeber: Zenodo
DOI: 10.5281/zenodo.3862244

Capturing Knowledge in Semantically-typed Relational Patterns to Enhance Relation Linking

Autoren: Kuldeep Singh, Isaiah Onando Mulang', Ioanna Lytra, Mohamad Yaser Jaradeh, Ahmad Sakor, Maria-Esther Vidal, Christoph Lange, Sören Auer
Veröffentlicht in: Proceedings of the Knowledge Capture Conference on - K-CAP 2017, 2017, Seite(n) 1-8, ISBN 9781450355537
Herausgeber: ACM Press
DOI: 10.1145/3148011.3148031

IASIS and BigMedilytics: Towards personalized medicine in Europe

Autoren: Ruiz, Ernestina Menasalvas; Rodríguez-González, Alejandro; Martín, Consuelo Gonzalo; Zanin, Massimiliano; Tuñas, Juan Manuel; Provencio, Mariano; Torrente, Maria; Franco, Fabio; Calvo, Virginia; Nuñez, Beatriz
Veröffentlicht in: CAEPIA 2018 conference, Ausgabe 2, 2018
Herausgeber: CAEPIA
DOI: 10.5281/zenodo.4008126

Radiomics Textural Features Extracted from Subcortical Structures of Grey Matter Probability for Alzheimers Disease Detection.

Autoren: César Antonio Ortiz Toro; Nuria Gutiérrez Sánchez; Consuelo Gonzalo-Martín; Roberto Garrido García; Alejandro Rodriguez González; Ernestina Menasalvas Ruiz
Veröffentlicht in: CBMS, Ausgabe 2, 2019
Herausgeber: Spain
DOI: 10.5281/zenodo.2650197

Old is Gold: Linguistic Driven Approach for Entity and Relation Linking of Short Text

Autoren: Ahmad Sakor, Isaiah Onando Mulang’, Kuldeep Singh, Saeedeh Shekarpour, Maria Esther Vidal, Jens Lehmann, Sören Auer
Veröffentlicht in: Proceedings of the 2019 Conference of the North, 2019, Seite(n) 2336-2346
Herausgeber: Association for Computational Linguistics
DOI: 10.18653/v1/n19-1243

iASiS Open Data Graph: Automated Semantic Integration of Disease-Specific Knowledge

Autoren: Nentidis, Anastasios; Bougiatiotis, Konstantinos; Krithara, Anastasia; Paliouras, Georgios
Veröffentlicht in: Ausgabe 3, 2020
Herausgeber: CBMS
DOI: 10.1109/cbms49503.2020.00049

Ranking Knowledge Graphs By Capturing Knowledge about Languages and Labels

Autoren: Lucie-Aimée Kaffee, Kemele M. Endris, Elena Simperl, Maria-Esther Vidal
Veröffentlicht in: Proceedings of the 10th International Conference on Knowledge Capture, 2019, Seite(n) 21-28, ISBN 9781450370080
Herausgeber: ACM
DOI: 10.1145/3360901.3364443

Summarizing Entity Temporal Evolution in Knowledge Graphs

Autoren: Tasnim, Mayesha; Collarana, Diego; Graux, Damien; Orlandi, Fabrizio; Vidal, Maria-Esther
Veröffentlicht in: New York, NY : ACM Press 961-965 (2019). doi:10.1145/3308560.3316521, Ausgabe 2, 2019
Herausgeber: ACM
DOI: 10.18154/rwth-2019-06971

Semantic Data Integration for Knowledge Graph Construction at Query Time

Autoren: Diego Collarana, Mikhail Galkin, Ignacio Traverso-Ribon, Christoph Lange, Maria-Esther Vidal, Soren Auer
Veröffentlicht in: 2017 IEEE 11th International Conference on Semantic Computing (ICSC), 2017, Seite(n) 109-116, ISBN 978-1-5090-4284-5
Herausgeber: IEEE
DOI: 10.1109/ICSC.2017.85

Unveiling Scholarly Communities over Knowledge Graphs

Autoren: Sahar Vahdati, Guillermo Palma, Rahul Jyoti Nath, Christoph Lange, Sören Auer, Maria-Esther Vidal
Veröffentlicht in: Digital Libraries for Open Knowledge - 22nd International Conference on Theory and Practice of Digital Libraries, TPDL 2018, Porto, Portugal, September 10–13, 2018, Proceedings, Ausgabe 11057, 2018, Seite(n) 103-115, ISBN 978-3-030-00065-3
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-00066-0_9

Semantic Data Integration Techniques for Transforming Big Biomedical Data into Actionable Knowledge

Autoren: Maria-Esther Vidal, Samaneh Jozashoori, Ahmad Sakor
Veröffentlicht in: 2019 IEEE 32nd International Symposium on Computer-Based Medical Systems (CBMS), 2019, Seite(n) 563-566, ISBN 978-1-7281-2286-1
Herausgeber: IEEE
DOI: 10.1109/cbms.2019.00116

Recognition of Time Expressions in Spanish Electronic Health Records

Autoren: Najafabadipour, Marjan; Zanin, Massimiliano; Rodríguez-González, Alejandro; Gonzalo-Martín, Consuelo; Nuñez García, Beatriz; Calvo, Virginia; Luis Cruz Bermudez, Juan; Provencio, Mariano; Menasalvas, Ernestina
Veröffentlicht in: CBMS, Ausgabe 30, 2019
Herausgeber: CBMS
DOI: 10.5281/zenodo.2871453

iASiS: Towards Heterogeneous Big Data Analysis for Personalized Medicine

Autoren: Anastasia Krithara, Fotis Aisopos, Vassiliki Rentoumi, Anastasios Nentidis, Konstantinos Bougatiotis, Maria-Esther Vidal, Ernestina Menasalvas, Alejandro Rodriguez-Gonzalez, Eleftherios Samaras, Peter Garrard, Maria Torrente, Mariano Provencio Pulla, Nikos Dimakopoulos, Rui Mauricio, Jordi Rambla De Argila, Gian Gaetano Tartaglia, George Paliouras
Veröffentlicht in: 2019 IEEE 32nd International Symposium on Computer-Based Medical Systems (CBMS), 2019, Seite(n) 106-111, ISBN 978-1-7281-2286-1
Herausgeber: IEEE
DOI: 10.1109/cbms.2019.00032

Disease networks and their contribution to disease understanding and drug repurposing. A survey of the state of the art

Autoren: García del Valle, Eduardo P.; García, Gerardo Lagunes; Santamaría, Lucía Prieto; Zanin, Massimiliano; Ruiz, Ernestina Menasalvas; Rodríguez-González, Alejandro
Veröffentlicht in: Ausgabe 1, 2019
Herausgeber: Heidelberg : Springer Verlag
DOI: 10.1101/415257

Drug-Drug Interaction Prediction on a Biomedical Literature Knowledge Graph

Autoren: Bougiatiotis, Konstantinos; Aisopos, Fotis; Nentidis, Anastasios; Krithara, Anastasia; Paliouras, Georgios
Veröffentlicht in: AIME 2020, Ausgabe 2, 2020
Herausgeber: Springer
DOI: 10.5281/zenodo.4006459

Optimizing Federated Queries Based on the Physical Design of a Data Lake

Autoren: Rohde, Philipp D.; Vidal, Maria-Esther
Veröffentlicht in: Workshops of the 23rd International Conference on Extending Database Technology/23rd International Conference on Database Theory, EDBT-ICDT-WS 2020, Ausgabe 2578, 2020, ISSN 1613-0073
Herausgeber: EDBT/ICDT 2020 Joint Conference
DOI: 10.5281/zenodo.4008119

Completing missing MeSH code mappings in UMLS through alternative expert-curated sources

Autoren: García del Valle, Eduardo P.; Lagunes García, Gerardo; Prieto Santamaría, Lucia; Zanin, Massimiliano; Rodríguez González, Alejandro; Menasalvas Ruiz, Ernestina
Veröffentlicht in: CBMS, Ausgabe 12, 2019
Herausgeber: Cold Spring Harbor Laboratory
DOI: 10.1101/602540

Why Reinvent the Wheel- Let's Build Question Answering Systems Together.

Autoren: Kuldeep Singh, Arun Sethupat Radhakrishna, Andreas Both, Saeedeh Shekarpour, Ioanna Lytra, Ricardo Usbeck, Akhilesh Vyas, Akmal Khikmatullaev, Dharmen Punjani, Christoph Lange, Maria-Esther Vidal, Jens Lehmann and Sören Auer.
Veröffentlicht in: 2018
Herausgeber: The Web Conference WWW 2018

ESWC 2018 Project Networking Track Title: iASiS: Big Data for Supporting Precision Medicine and Public Health Policy-Making Description: This extended abstract describes the objectives of the iASiS project, the main characteristics of the iASiS knowledge graph and the components of the iASiS framework. Resources that will be made available to the Semantic Web community are described as well.

Autoren: Maria-Esther Vidal
Veröffentlicht in: 2018
Herausgeber: European Semantic Web Conference

HARE: An Engine for Enhancing Answer Completeness of SPARQL Queries via Crowdsourcing.

Autoren: Maribel Acosta, Elena Simperl, Fabian Flöck and Maria Esther Vidal.
Veröffentlicht in: 2018
Herausgeber: The Web Conference WWW 2018

Automatic Detection of Linguistic indicators as a means of early detection of Alzheimer’s and of related dementias: A Computational Linguistics analysis

Autoren: Rentoumi Vassiliki, Dimitra Arfani, Katerina Fragkopoulou, Eva Danasi, Spyridoula Varlokosta, Spyros Papadatos and George Paliouras
Veröffentlicht in: 2017
Herausgeber: Cognitive Infocommunications (CogInfoCom), 2017 8th IEEE International Conference on Cognitive Infocommunications

Big Data for Supporting Precision Medicine in Lung Cancer Patient.

Autoren: Maria Torrente, Fernando FrancoErnestina Mensalvas, , Alejandro Rodriguez-Gonzalez, Virginia Calvo, Maria Auxiliadora Brenes, George Paliouras, Mariano Provencio-Pulla
Veröffentlicht in: 2018
Herausgeber: American Society of Clinical Oncology

BOUNCER: Privacy-aware Query Processing Over Federations of RDF Dataset Description: This paper describes BOUNCER, a framework for enforcing data privacy and access control regulations. BOUNCER relies on novel query execution strategy to ensure that data access regulations are satisfied during query execution.

Autoren: Kemele M. Endris, Zuhair Almhithawi, Ioanna Lytra, Maria-Esther Vidal, Sören Auer
Veröffentlicht in: 2018
Herausgeber: DEXA 2018 29th International Conference on Database and Expert Systems Applications

Evaluating Wikipedia as a source of information for disease understanding

Autoren: Eduardo P. García del Valle, Gerardo Lagunes García, Lucia Prieto Santamaría, Massimiliano Zanin, Alejandro Rodríguez González, Ernestina Menasalvas Ruiz
Veröffentlicht in: 2018
Herausgeber: 31st IEEE CBMS International Symposium on Computer-Based Medical Systems

AAIC '18 - Alzheimer's Association International Conference iASiS: Big Data for Precision Medicine. Automatic Detection of Linguistic Indicators as a Means of Early Prediction of Alzheimer's and of Related Dementias

Autoren: Vassiliki Rentoumi, George Paliouras, Anastasia Krithara, Peter Garrard, and Anastasios Nentidis
Veröffentlicht in: 2018
Herausgeber: Alzheimer's Association International Conference

EU Project Description - iASiS: Big Data for Supporting Precision Medicine and Public Health Policy-Making

Autoren: Maria-Esther Vidal
Veröffentlicht in: Data Integration in the Life Sciences 2018, 2018
Herausgeber: Data Integration in the Life Sciences 2018

iASiS: Big Data for Supporting Precision Medicine and Public Health Policy-Making

Autoren: Anastasia Krithara, George Paliouras, Anna Triantafillou, Maria-Esther Vidal, Soren Auer, Ernestina Menasalvas, Mariano Provencio Pulla, Maria Torrente, Peter Garrard, Alison Evans, Roderic Guigo, Louiqa Raschid
Veröffentlicht in: 2017
Herausgeber: ESWC2017

Semantic integration of disease-specific knowledge

Autoren: Anastasios Nentidis, Konstantinos Bougiatiotis, Anastasia Krithara and Georgios Paliouras
Veröffentlicht in: 2018
Herausgeber: 17TH EUROPEAN CONFERENCE ON COMPUTATIONAL BIOLOGY

GARUM: A Semantic Similarity Measure Based on Machine Learning and Entity Characteristics Description: This paper presents GARUM, a semantic similarity measure that resorts to machine learning methods for learning the most suitable characteristics to consider during the computation of the relatedness of two entities. Knowledge graphs are used to represent the entities, and semantics encoded in the

Autoren: Ignacio Traverso-Ribon, Maria-Esther Vidal
Veröffentlicht in: 2018
Herausgeber: DEXA 2018 29th International Conference on Database and Expert Systems Applications

Aristotelieio Glosologia - Automatic extraction of linguistic features in Alzheimer’s disease: A computational linguistics approach

Autoren: Rentoumi Vassiliki, Dimitra Arfani, Katerina Fragkopoulou, Spyridoula Varlokosta, and George Paliouras
Veröffentlicht in: 2018
Herausgeber: 39th Annual Meeting of the Department of Linguistics, School of Philosophy

Synthesizing Knowledge Graphs from web sources with the MINTE+ framework

Autoren: Diego Collarana, Michael Galkin, Christoph Lange, Simon Scerri, Sören Auer and Maria-Esther Vidal
Veröffentlicht in: 2018
Herausgeber: 17th International Semantic Web Conference

Automatic Recording and Analysis of Somniloquy through the use of Mobile Devices to Support the Diagnosis of Psychological Pathologies

Autoren: Virginia Aparicio-Paniagua, Jorge Pérez-Muñoz, Alejandro Rodríguez-González, Ángel García-Pedrero, Juan Miguel Gomez-Berbis, Consuelo Gonzalo-Martin, Ernestina Menasalvas-Ruiz, Giner Alor-Hernández
Veröffentlicht in: Ausgabe 24-27 October 2017, 2017, Seite(n) 169-180
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-319-67283-0_13

Beyond MeSH: Fine-Grained Semantic Indexing of Biomedical Literature Based on Weak Supervision

Autoren: Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras
Veröffentlicht in: 2019 IEEE 32nd International Symposium on Computer-Based Medical Systems (CBMS), 2019, Seite(n) 180-185, ISBN 978-1-7281-2286-1
Herausgeber: IEEE
DOI: 10.1109/cbms.2019.00045

MINTE - semantically integrating RDF graphs

Autoren: Diego Collarana, Mikhail Galkin, Ignacio Traverso-Ribón, Maria-Esther Vidal, Christoph Lange, Sören Auer
Veröffentlicht in: Proceedings of the 7th International Conference on Web Intelligence, Mining and Semantics, 2017, Seite(n) 1-11, ISBN 9781450352253
Herausgeber: ACM
DOI: 10.1145/3102254.3102280

FedSDM: Semantic Data Manager for Federations of RDF Datasets

Autoren: Endris, Kemele M.; Vidal, Maria-Esther; Auer, Sören
Veröffentlicht in: DILS, Ausgabe 8, 2018
Herausgeber: DILS
DOI: 10.13140/rg.2.2.22850.84160

SMJoin - A Multi-way Join Operator for SPARQL Queries

Autoren: Mikhail Galkin, Kemele M. Endris, Maribel Acosta, Diego Collarana, Maria-Esther Vidal, Sören Auer
Veröffentlicht in: Proceedings of the 13th International Conference on Semantic Systems - Semantics2017, 2017, Seite(n) 104-111, ISBN 9781450352963
Herausgeber: ACM Press
DOI: 10.1145/3132218.3132220

Data Integration for Supporting Biomedical Knowledge Graph Creation at Large-Scale

Autoren: Jozashoori, Samaneh; Novikova, Tatiana; Vidal, Maria-Esther
Veröffentlicht in: Ausgabe 3, 2018
Herausgeber: Springer International Publishing
DOI: 10.1007/978-3-030-06016-9_9

Evaluating Wikipedia as a Source of Information for Disease Understanding

Autoren: Eduardo P. Garcia del Valle, Gerardo Lagunes Garcia, Lucia Prieto Santamaria, Massimiliano Zanin, Ernestina Menasalvas Ruiz, Alejandro Rodriguez Gonzalez
Veröffentlicht in: 2018 IEEE 31st International Symposium on Computer-Based Medical Systems (CBMS), 2018, Seite(n) 399-404, ISBN 978-1-5386-6060-7
Herausgeber: IEEE
DOI: 10.1109/cbms.2018.00076

Falcon 2.0: An Entity and Relation Linking Tool over Wikidata

Autoren: Sakor, Ahmad; Singh, Kuldeep; Patel, Anery; Vidal, Maria-Esther
Veröffentlicht in: Ausgabe 2, 2019
Herausgeber: Arxiv
DOI: 10.5281/zenodo.4008148

Structural analysis of SARS-CoV-2 and prediction of the human interactome

Autoren: Vandelli, Andrea; Monti, Michele; Milanetti, Edoardo; Ponti, Riccardo Delli; Tartaglia, Gian Gaetano
Veröffentlicht in: Ausgabe 4, 2020
Herausgeber: Biorxiv
DOI: 10.1101/2020.03.28.013789

Spa-neg: an approach for negation detection in clinical text written in Spanish

Autoren: , Oswaldo; , Ernestina; , Alejandro
Veröffentlicht in: Ausgabe 5, 2020
Herausgeber: Zenodo
DOI: 10.5281/zenodo.3625499

Error detection in Knowledge Graphs: Path Ranking, Embeddings or both?

Autoren: Fasoulis, R.; Bougiatiotis, K.; Aisopos, F.; Nentidis, A.; Paliouras, G.
Veröffentlicht in: Ausgabe 3, 2020
Herausgeber: Arxiv
DOI: 10.5281/zenodo.4006124

Reconstructing the Patient's Natural History from Electronic Health Records

Autoren: Najafabadipour, Marjan; Zanin, Massimiliano; Rodríguez-González, Alejandro; Torrente, Maria; Nuñez García, Beatriz; Cruz Bermudez, Juan Luis; Provencio, Mariano; Menasalvas, Ernestina
Veröffentlicht in: Ausgabe 8, 2020
Herausgeber: Zenodo
DOI: 10.5281/zenodo.3765826

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