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Pervasive Upstream Non-Coding Transcription Underpinning Adaptation

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Publications

Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

Author(s): Peter Kindgren, Ryan Ard, Maxim Ivanov, Sebastian Marquardt
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-07010-6

Transcription-driven chromatin repression of Intragenic transcription start sites

Author(s): Mathias Nielsen, Ryan Ard, Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Vicent Pelechano, Sebastian Marquardt
Published in: PLOS Genetics, Issue 15/2, 2019, Page(s) e1007969, ISSN 1553-7404
DOI: 10.1371/journal.pgen.1007969

Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis

Author(s): Quentin Angelo Thomas, Ryan Ard, Jinghan Liu, Bingnan Li, Jingwen Wang, Vicent Pelechano, Sebastian Marquardt
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
DOI: 10.1038/s41467-020-16390-7

Organismal benefits of transcription speed control at gene boundaries

Author(s): Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Indranil Malik, Axel Thieffry, Peter Brodersen, Albin Sandelin, Craig D Kaplan, Sebastian Marquardt
Published in: EMBO reports, Issue 21/4, 2020, ISSN 1469-221X
DOI: 10.15252/embr.201949315

Native elongation transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis

Author(s): Peter Kindgren, Maxim Ivanov, Sebastian Marquardt
Published in: Nucleic Acids Research, Issue 48/5, 2019, Page(s) 2332-2347, ISSN 0305-1048
DOI: 10.1093/nar/gkz1189

A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription

Author(s): Xueyuan Leng, Quentin Thomas, Simon Horskjær Rasmussen, Sebastian Marquardt
Published in: Trends in Plant Science, Issue 25/8, 2020, Page(s) 744-764, ISSN 1360-1385
DOI: 10.1016/j.tplants.2020.03.005

DNA Processing in the Context of Noncoding Transcription

Author(s): Uthra Gowthaman, Desiré García-Pichardo, Yu Jin, Isabel Schwarz, Sebastian Marquardt
Published in: Trends in Biochemical Sciences, 2020, ISSN 0968-0004
DOI: 10.1016/j.tibs.2020.07.009