Pervasive Upstream Non-Coding Transcription Underpinning Adaptation

Publicaciones

TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

Autores: Ivanov, M., Sandelin, A. and Marquardt, S
Publicado en: BMC Bioinformatics, Edición 22/290, 2021, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-021-04208-2

DNA Processing in the Context of Noncoding Transcription

Autores: Uthra Gowthaman, Desiré García-Pichardo, Yu Jin, Isabel Schwarz, Sebastian Marquardt
Publicado en: Trends in Biochemical Sciences, 2020, ISSN 0968-0004
Editor: Elsevier BV
DOI: 10.1016/j.tibs.2020.07.009

R-loops at microRNA encoding loci promote co-transcriptional processing of pri-miRNAs in plants

Autores: Lucia Gonzalo, Ileana Tossolini, Tomasz Gulanicz, Damian A. Cambiagno, Anna Kasprowicz-Maluski, Dariusz Jan Smolinski, María Florencia Mammarella, Federico D. Ariel, Sebastian Marquardt, Zofia Szweykowska-Kulinska, Artur Jarmolowski and Pablo A. Manavella
Publicado en: Nature Plants, Edición 8, 2022, Página(s) 402–418, ISSN 2055-0278
Editor: Springer Nature
DOI: 10.1038/s41477-022-01125-x

The Hda1 histone deacetylase limits divergent non-coding transcription and restricts transcription initiation frequency

Autores: Uthra Gowthaman, Maxim Ivanov, Isabel Schwarz, Heta P Patel, Niels A Müller, Desiré García-Pichardo, Tineke L Lenstra, Sebastian Marquardt
Publicado en: The EMBO Journal, Edición 40, 2021, Página(s) e108903, ISSN 0261-4189
Editor: Nature Publishing Group
DOI: 10.15252/embj.2021108903

<scp>LncRNA FLAIL</scp> affects alternative splicing and represses flowering in <i>Arabidopsis</i>

Autores: Yu Jin; Maxim Ivanov; Anna Nelson Dittrich; Andrew DL Nelson; Sebastian Marquardt
Publicado en: The EMBO Journal, Edición 42, 2023, Página(s) e110921, ISSN 0261-4189
Editor: Nature Publishing Group
DOI: 10.15252/embj.2022110921

Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

Autores: Peter Kindgren, Ryan Ard, Maxim Ivanov, Sebastian Marquardt
Publicado en: Nature Communications, Edición 9/1, 2018, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-018-07010-6

Transcription-driven chromatin repression of Intragenic transcription start sites

Autores: Mathias Nielsen, Ryan Ard, Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Vicent Pelechano, Sebastian Marquardt
Publicado en: PLOS Genetics, Edición 15/2, 2019, Página(s) e1007969, ISSN 1553-7404
Editor: PLOS
DOI: 10.1371/journal.pgen.1007969

Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis

Autores: Quentin Angelo Thomas, Ryan Ard, Jinghan Liu, Bingnan Li, Jingwen Wang, Vicent Pelechano, Sebastian Marquardt
Publicado en: Nature Communications, Edición 11/1, 2020, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-020-16390-7

Organismal benefits of transcription speed control at gene boundaries

Autores: Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Indranil Malik, Axel Thieffry, Peter Brodersen, Albin Sandelin, Craig D Kaplan, Sebastian Marquardt
Publicado en: EMBO reports, Edición 21/4, 2020, ISSN 1469-221X
Editor: Nature Publishing Group
DOI: 10.15252/embr.201949315

Native elongation transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis

Autores: Peter Kindgren, Maxim Ivanov, Sebastian Marquardt
Publicado en: Nucleic Acids Research, Edición 48/5, 2019, Página(s) 2332-2347, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkz1189

A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription

Autores: Xueyuan Leng, Quentin Thomas, Simon Horskjær Rasmussen, Sebastian Marquardt
Publicado en: Trends in Plant Science, Edición 25/8, 2020, Página(s) 744-764, ISSN 1360-1385
Editor: Elsevier BV
DOI: 10.1016/j.tplants.2020.03.005

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