Accelerating Neuroscience Research by Unifying Knowledge Representation and Analysis Through a Domain Specific Language

Resultado final

This deliverable is composed of three axes: 1) Software deliverable: software developed by this action will be, after publication, release publicly under a licence appropriate for it's distribution. For this within the first 6 months we will set up a repository to distribute the software produced during this project. 2) Referencing of publicly available data used: Publicly available data used by this project will be referenced to allow others it's precise identification and the reproduction of results generated by this project. The datasets used during this project will be decided during the first 6 months such that they will be publicly accessible under reasonable conditions. 3) Distribution of generated data: Data generated by this project will be released in platforms such as OpenAire with a licence allowing it's use under reasonable conditions. Within the first 6 months the distribution channels and desired licence for generated data will be decided.

Publicaciones

Complex Coordinate-Based Meta-Analysis with Probabilistic Programming

Autores: Iovene, Valentin; Zanitti, Gaston; Wassermann, Demian
Publicado en: Proceedings of the AAAI Conference on Artificial Intelligence, 2021
Editor: Association for the Advancement of Artificial Intelligence
DOI: 10.1609/aaai.v35i1.16096

Probabilistic Programming in neurolang: Bridging the Gap Between Cognitive Science and Statistical Modeling

Autores: Valentin Iovene; Demian Wassermann
Publicado en: Organization for Human Brain Mapping, 2019
Editor: Organization for Human Brain Mapping

Verifying ontological knowledge through meta-analysis: Study cases of Pain and Consciousness

Autores: ZANITTI, Gaston; IOVENE, Valentin; WASSERMANN, Demian
Publicado en: https://hal.inria.fr/hal-03216621, Edición 1, 2021
Editor: Organisation for Human Brain Mapping

Text to Brain: Predicting the Spatial Distribution of Neuroimaging Observations from Text Reports

Autores: Jérôme Dockès, Demian Wassermann, Russell Poldrack, Fabian Suchanek, Bertrand Thirion, Gaël Varoquaux
Publicado en: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part III, Edición 11072, 2018, Página(s) 584-592, ISBN 978-3-030-00930-4
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-00931-1_67

A Novel Sulcal Hierarchy Based on Manually Labelled Sulci

Autores: Machlouzarides-Shalit, Antonia; Iovene, Valentin; Makris, Nikos; Wassermann, Demian
Publicado en: Organization for Human Brain Mapping, 2019
Editor: Organization for Human Brain Mapping

ADAVI: Automatic Dual Amortized Variational Inference Applied To Pyramidal Bayesian Models

Autores: Rouillard, Louis; Wassermann, Demian
Publicado en: International Conference in Leraning Representations, 2021
Editor: International Conference in Leraning Representations
DOI: 10.48550/arxiv.2106.12248

Fine-grain atlases of functional modes for fMRI analysis

Autores: Kamalaker Dadi, Gaël Varoquaux, Antonia Machlouzarides-Shalit, Krzysztof J. Gorgolewski, Demian Wassermann, Bertrand Thirion, Arthur Mensch
Publicado en: NeuroImage, Edición 221, 2020, Página(s) 117126, ISSN 1053-8119
Editor: Academic Press
DOI: 10.1016/j.neuroimage.2020.117126

Meta-Analysis of the Functional Neuroimaging Literature with Probabilistic Logic Programming

Autores: Majd Abdallah; Valentin Iovene; Gaston Zanitti; Demian Wassermann
Publicado en: Scientific Reports, Edición 20452322, 2022, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1101/2022.02.25.481931

Functional gradients in the human lateral prefrontal cortex revealed by a comprehensive coordinate-based meta-analysis

Autores: Majd Abdallah; Gaston Zanitti; Valentin Iovene; Demian Wassermann
Publicado en: eLife, Edición 2050084X, 2022, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.76926

The visual word form area (VWFA) is part of both language and attention circuitry

Autores: Lang Chen, Demian Wassermann, Daniel A. Abrams, John Kochalka, Guillermo Gallardo-Diez, Vinod Menon
Publicado en: Nature Communications, Edición 10/1, 2019, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-019-13634-z

A comparison of three fiber tract delineation methods and their impact on white matter analysis

Autores: Valerie J. Sydnor, Ana María Rivas-Grajales, Amanda E. Lyall, Fan Zhang, Sylvain Bouix, Sarina Karmacharya, Martha E. Shenton, Carl-Fredrik Westin, Nikos Makris, Demian Wassermann, Lauren J. O'Donnell, Marek Kubicki
Publicado en: NeuroImage, Edición 178, 2018, Página(s) 318-331, ISSN 1053-8119
Editor: Academic Press
DOI: 10.1016/j.neuroimage.2018.05.044

Foundational number sense training gains are predicted by hippocampal–parietal circuits

Autores: Hyesang Chang; Lang Chen; Yuan Zhang; Ye Xie; Carlo de Los Angeles; Emma Adair; Gaston Zanitti; Demian Wassermann; Miriam Rosenberg-Lee; Vinod Menon
Publicado en: Journal of Neuroscience, Edición 02706474, 2022, ISSN 0270-6474
Editor: Society for Neuroscience
DOI: 10.1523/jneurosci.1005-21.2022

Microstructural organization of human insula is linked to its macrofunctional circuitry and predicts cognitive control

Autores: Vinod Menon, Guillermo Gallardo, Mark A Pinsk, Van-Dang Nguyen, Jing-Rebecca Li, Weidong Cai, Demian Wassermann
Publicado en: eLife, Edición 9, 2020, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.53470

Probabilistic Logic for Coordinate-Based Meta-Analysis of Functional Segregation in the Brain

Autores: Majd Abdallah; Valentin Iovene; Demian Wassermann
Publicado en: Organization for Human Brain Mapping, 2022
Editor: Organization for Human Brain Mapping

PAVI: Plate-Amortized Variational Inference

Autores: Rouillard, Louis; Moreau, Thomas; Wassermann, Demian
Publicado en: ArXiv, 2022
Editor: ArXiV
DOI: 10.48550/arxiv.2206.05111

Bridging the Gap: From Neuroanatomical Knowledge to Tractography of Brain Pathways

Autores: Guillermo Gallardo, Demian Wassermann, Alfred Anwander
Publicado en: BioRxiv, 2020
Editor: BioRxiv
DOI: 10.1101/2020.08.01.232116

Probabilistic Programming in neurolang: Bridging the Gap Between Cognitive Science and Statistical Modeling

Autores: Valentin Iovene, Demian Wassermann
Publicado en: Organisation for Human Brain Mapping, Edición Yearly, 2020
Editor: Organisation for Human Brain Mapping

Sensing Von Economo Neurons in the Insula with Multi-shell Diffusion MRI

Autores: Wassermann , Demian; Nguyen , Dang Van; Gallardo , Guillermo; Li , Jing-Rebecca; Cai , Weidong; Menon , Vinod
Publicado en: International Society for Magnetic Resonance in Medicine, Edición 1, 2019
Editor: International Society for Magnetic Resonance in Medicine

A Novel Sulcal Hierarchy Based on Manually Labelled Sulci

Autores: Antonia Machlouzarides-Shalit, Valentin Iovene, Nikos Makris, Demian Wassermann
Publicado en: Organization for Human Brain Mapping, Edición Yearly, 2019
Editor: Organization for Human Brain Mapping

Quantitative modeling links in vivo microstructural and macrofunctional organization of human and macaque insular cortex, and predicts cognitive control abilities

Autores: Vinod Menon, Gallardo Guillermo, Mark A. Pinsk, Van-Dang Nguyen, Jing-Rebecca Li, Weidong Cai, Demian Wassermann
Publicado en: BioRxiv, 2019
Editor: BioRxiv
DOI: 10.1101/662601

Scalable Query Answering under Uncertainty to Neuroscientific Ontological Knowledge: The NeuroLang Approach

Autores: Zanitti, Gaston; Soto, Yamil; Iovene, Valentin; Martinez, Maria Vanina; Rodriguez, Ricardo; Simari, Gerardo; Wassermann, Demian
Publicado en: ArXiv, 2022
Editor: ArXiv
DOI: 10.48550/arxiv.2202.11333

NeuroLang: Representing Neuroanatomy with Sulcus-Specific Queries

Autores: Antonia Machlouzarides-Shalit, Nikos Makris, Gaston Zanitti, Valentin Iovene, Guillaume Lemaitre, Guillaume Favelier, Demian Wassermann
Publicado en: Organization for the Human Brain Mapping, Edición Yearly, 2020
Editor: Organisation for the Human Brain Mapping

Resultado final

Publicaciones

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